Cla97C06G110980 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C06G110980
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Transferase, transferring glycosyl groups
Location	Cla97Chr06 : 1625457 .. 1626032 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGCAACTTCAACATCATCCAACACCAGCTCGGCAACGTTCTCTACGACCTCGAATGGAACAACGGCACTTCCTTCTTCTACACTTTGGACTCTTCTAAGACTTGCTCTTCCGCTCAGCTTGAGGTTGGTATTCTACGACCCAATTGGCTCGACGGAGCCAAATATCTGGGTCAACGCCATGTCGATGGCTTCCTCTGTAATGTCTGGGAGAAGGTCGATTTCATCTGGTATTACGAGGATGTTGAGACCAAGAGACCCGTTCATTGGCTCTTCTACACTGGTAACCCTTTTTTTACCCTACCTCTTCACTTTCATTCTTAATTTCCTGCCTTTCACTATTCAATGGTGTTTTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTAATTGTGCAGGAAGACAGGCTCATGTGATGACATTTGAAGTTGGTGCTGTGCTGGAAGATGAGAAATGGCAAGCCCCTGTCTACTGCTTTGACGGAGGCAAGGGAACTAGTGTCAATAATGGGGTTCTCCACCAGAATTTGCCTGTAATGGATGGAGTTCTAAAGGGTTCTCTATTCCCCGCCATTTGA

mRNA sequence

ATGGTCGCAACTTCAACATCATCCAACACCAGCTCGGCAACGTTCTCTACGACCTCGAATGGAACAACGGCACTTCCTTCTTCTACACTTTGGACTCTTCTAAGACTTGCTCTTCCGCTCAGCTTGAGGTTGGTATTCTACGACCCAATTGGCTCGACGGAGCCAAATATCTGGGTCAACGCCATGTCGATGGCTTCCTCTGTAATGTCTGGGAGAAGGTCGATTTCATCTGGTATTACGAGGATGTTGAGACCAAGAGACCCGTTCATTGGCTCTTCTACACTGGTAACCCTTTTTTTACCCTACCTCTTCACTTTCATTCTTAATTTCCTGCCTTTCACTATTCAATGGTGTTTTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTAATTGTGCAGGAAGACAGGCTCATGTGATGACATTTGAAGTTGGTGCTGTGCTGGAAGATGAGAAATGGCAAGCCCCTGTCTACTGCTTTGACGGAGGCAAGGGAACTAGTGTCAATAATGGGGTTCTCCACCAGAATTTGCCTGTAATGGATGGAGTTCTAAAGGGTTCTCTATTCCCCGCCATTTGA

Coding sequence (CDS)

ATGGTCGCAACTTCAACATCATCCAACACCAGCTCGGCAACGTTCTCTACGACCTCGAATGGAACAACGGCACTTCCTTCTTCTACACTTTGGACTCTTCTAAGACTTGCTCTTCCGCTCAGCTTGAGGTTGGTATTCTACGACCCAATTGGCTCGACGGAGCCAAATATCTGGGTCAACGCCATGTCGATGGCTTCCTCTGTAATGTCTGGGAGAAGGTCGATTTCATCTGGTATTACGAGGATGTTGAGACCAAGAGACCCGTTCATTGGCTCTTCTACACTGGTAACCCTTTTTTTACCCTACCTCTTCACTTTCATTCTTAATTTCCTGCCTTTCACTATTCAATGGTGTTTTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTAATTGTGCAGGAAGACAGGCTCATGTGATGACATTTGAAGTTGGTGCTGTGCTGGAAGATGAGAAATGGCAAGCCCCTGTCTACTGCTTTGACGGAGGCAAGGGAACTAGTGTCAATAATGGGGTTCTCCACCAGAATTTGCCTGTAATGGATGGAGTTCTAAAGGGTTCTCTATTCCCCGCCATTTGA

Protein sequence

MVATSTSSNTSSATFSTTSNGTTALPSSTLWTLLRLALPLSLRLVFYDPIGSTEPNIWVNAMSMASSVMSGRRSISSGITRMLRPRDPFIGSSTLVTLFLPYLFTFILNFLPFTIQWCFSLPFPSLPFPNCAGRQAHVMTFEVGAVLEDEKWQAPVYCFDGGKGTSVNNGVLHQNLPVMDGVLKGSLFPAI

Homology

[Close]

BLAST of Cla97C06G110980 vs. NCBI nr
Match: XP_022991566.1 (uncharacterized protein At4g14100-like [Cucurbita maxima])

HSP 1 Score: 115.9 bits (289), Expect = 1.5e-22
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 133 GRQAHVMTFEVGAVLEDEKWQAPVYCFDGGKGTSVNNGVLHQNLPVMDGVLKGSLFPAI 192
           GRQAHVMTFEVGAVLEDEKWQAPVYCFD GKG   NNGVLHQNLPVMDGVL+GSLFPAI
Sbjct: 153 GRQAHVMTFEVGAVLEDEKWQAPVYCFD-GKGGGANNGVLHQNLPVMDGVLRGSLFPAI 210

[Close]

BLAST of Cla97C06G110980 vs. NCBI nr
Match: XP_023548717.1 (uncharacterized protein At4g14100-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 115.9 bits (289), Expect = 1.5e-22
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 133 GRQAHVMTFEVGAVLEDEKWQAPVYCFDGGKGTSVNNGVLHQNLPVMDGVLKGSLFPAI 192
           GRQAHVMTFEVGAVLEDEKWQAPVYCFD GKG   NNGVLHQNLPVMDGVL+GSLFPAI
Sbjct: 153 GRQAHVMTFEVGAVLEDEKWQAPVYCFD-GKGGGANNGVLHQNLPVMDGVLRGSLFPAI 210

[Close]

BLAST of Cla97C06G110980 vs. NCBI nr
Match: XP_023548718.1 (uncharacterized protein At4g14100-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 115.9 bits (289), Expect = 1.5e-22
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 133 GRQAHVMTFEVGAVLEDEKWQAPVYCFDGGKGTSVNNGVLHQNLPVMDGVLKGSLFPAI 192
           GRQAHVMTFEVGAVLEDEKWQAPVYCFD GKG   NNGVLHQNLPVMDGVL+GSLFPAI
Sbjct: 153 GRQAHVMTFEVGAVLEDEKWQAPVYCFD-GKGGGANNGVLHQNLPVMDGVLRGSLFPAI 210

[Close]

BLAST of Cla97C06G110980 vs. NCBI nr
Match: XP_023520922.1 (uncharacterized protein At4g14100-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 114.8 bits (286), Expect = 3.3e-22
Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 133 GRQAHVMTFEVGAVLEDEKWQAPVYCFDGGKGTSVNNGVLHQNLPVMDGVLKGSLFPAI 192
           GR+AHVMTFEVGAVLEDEKWQAPVYCFD GKG   NNGVLHQNLPVMDGVL+GSLFPAI
Sbjct: 154 GREAHVMTFEVGAVLEDEKWQAPVYCFD-GKGGGANNGVLHQNLPVMDGVLRGSLFPAI 211

[Close]

BLAST of Cla97C06G110980 vs. NCBI nr
Match: XP_022953223.1 (uncharacterized protein At4g14100-like [Cucurbita moschata])

HSP 1 Score: 113.2 bits (282), Expect = 9.6e-22
Identity = 52/59 (88.14%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 133 GRQAHVMTFEVGAVLEDEKWQAPVYCFDGGKGTSVNNGVLHQNLPVMDGVLKGSLFPAI 192
           GR+AHVMTFEVGAVLEDEKWQAPVYCFD GKG   NNGVLHQN PVMDGVL+GSLFPAI
Sbjct: 153 GREAHVMTFEVGAVLEDEKWQAPVYCFD-GKGGGANNGVLHQNFPVMDGVLRGSLFPAI 210

[Close]

BLAST of Cla97C06G110980 vs. TrEMBL
Match: tr|A0A0A0KDE7|A0A0A0KDE7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G091310 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.4e-15
Identity = 42/50 (84.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 133 GRQAHVMTFEVGAVLEDEKWQAPVYCFDGGKGTSVNNGVLHQNLPVMDGV 183
           GRQAHVMTFEVGAVLEDEKWQAPVYCFD G GT+VN+  LHQNLP+M GV
Sbjct: 166 GRQAHVMTFEVGAVLEDEKWQAPVYCFD-GTGTTVNDVALHQNLPLMTGV 214

[Close]

BLAST of Cla97C06G110980 vs. TrEMBL
Match: tr|A0A1S3CCI7|A0A1S3CCI7_CUCME (uncharacterized protein At4g14100-like OS=Cucumis melo OX=3656 GN=LOC103498893 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 7.5e-15
Identity = 45/62 (72.58%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 133 GRQAHVMTFEVGAVLEDEKWQAPVYCFDGGKGTSVNNGVLHQNLPVMDGV---LKGSLFP 192
           GRQAHVMTFEVGAVLEDE WQAPVYCFD G GT+ N+  LHQNLP+M GV   L    FP
Sbjct: 153 GRQAHVMTFEVGAVLEDENWQAPVYCFD-GTGTTANDVALHQNLPLMGGVNNRLLHQNFP 212

[Close]

BLAST of Cla97C06G110980 vs. TrEMBL
Match: tr|A0A1S3CAT8|A0A1S3CAT8_CUCME (uncharacterized protein At4g14100-like OS=Cucumis melo OX=3656 GN=LOC103498894 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 9.8e-15
Identity = 45/62 (72.58%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 133 GRQAHVMTFEVGAVLEDEKWQAPVYCFDGGKGTSVNNGVLHQNLPVMDGV---LKGSLFP 192
           GRQAHVMTFEVGAVLEDEKWQAPVYCFD G GT+VN+  LHQNLP+M  V   L    +P
Sbjct: 166 GRQAHVMTFEVGAVLEDEKWQAPVYCFD-GTGTTVNDVALHQNLPLMPDVNNRLLHQNYP 225

[Close]

BLAST of Cla97C06G110980 vs. TrEMBL
Match: tr|A0A1S3CBB2|A0A1S3CBB2_CUCME (uncharacterized protein At4g14100-like OS=Cucumis melo OX=3656 GN=LOC103498895 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.9e-14
Identity = 44/62 (70.97%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 133 GRQAHVMTFEVGAVLEDEKWQAPVYCFDGGKGTSVNNGVLHQNLPVMDGVLKGSL---FP 192
           GR AHVMTFEVGAVLEDEKWQAPVYCFD G G + N+  LHQNLP+M  V K  L   FP
Sbjct: 154 GRDAHVMTFEVGAVLEDEKWQAPVYCFD-GTGNTANDVALHQNLPLMADVKKRLLHQNFP 213

[Close]

BLAST of Cla97C06G110980 vs. TrEMBL
Match: tr|E5GB54|E5GB54_CUCME (Glycosyl transferase OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.9e-14
Identity = 44/62 (70.97%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 133 GRQAHVMTFEVGAVLEDEKWQAPVYCFDGGKGTSVNNGVLHQNLPVMDGVLKGSL---FP 192
           GR AHVMTFEVGAVLEDEKWQAPVYCFD G G + N+  LHQNLP+M  V K  L   FP
Sbjct: 154 GRDAHVMTFEVGAVLEDEKWQAPVYCFD-GTGNTANDVALHQNLPLMADVKKRLLHQNFP 213

[Close]

BLAST of Cla97C06G110980 vs. Swiss-Prot
Match: sp|Q67YC9|Y4141_ARATH (Uncharacterized protein At4g14100 OS=Arabidopsis thaliana OX=3702 GN=At4g14100 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.3e-09
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 0


Query: 133 GRQAHVMTFEVGAVLEDEKWQAPVYCFDGGKGTSVNNGVLHQ 175
           GR+AH+MT+EVGAVLEDEKWQAPVYCF+  K +    G L +
Sbjct: 155 GREAHIMTYEVGAVLEDEKWQAPVYCFNKEKKSLSTKGALSE 196

[Close]

BLAST of Cla97C06G110980 vs. TAIR10
Match: AT4G14100.1 (transferases, transferring glycosyl groups)

HSP 1 Score: 64.7 bits (156), Expect = 7.1e-11
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 0


Query: 133 GRQAHVMTFEVGAVLEDEKWQAPVYCFDGGKGTSVNNGVLHQ 175
           GR+AH+MT+EVGAVLEDEKWQAPVYCF+  K +    G L +
Sbjct: 155 GREAHIMTYEVGAVLEDEKWQAPVYCFNKEKKSLSTKGALSE 196

[Close]

BLAST of Cla97C06G110980 vs. TAIR10
Match: AT3G23760.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 63.5 bits (153), Expect = 1.6e-10
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 133 GRQAHVMTFEVGAVLEDEKWQAPVYCFDGGK 164
           GR+AHVMTFEVGAVLEDEKWQAPVYCF   K
Sbjct: 160 GREAHVMTFEVGAVLEDEKWQAPVYCFHNEK 190

The following BLAST results are available for this feature:

BLAST of Cla97C06G110980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022991566.1	1.5e-22	91.53	uncharacterized protein At4g14100-like [Cucurbita maxima]	[more]
XP_023548717.1	1.5e-22	91.53	uncharacterized protein At4g14100-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023548718.1	1.5e-22	91.53	uncharacterized protein At4g14100-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023520922.1	3.3e-22	89.83	uncharacterized protein At4g14100-like [Cucurbita pepo subsp. pepo]	[more]
XP_022953223.1	9.6e-22	88.14	uncharacterized protein At4g14100-like [Cucurbita moschata]	[more]

BLAST of Cla97C06G110980 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KDE7\|A0A0A0KDE7_CUCSA	3.4e-15	84.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G091310 PE=4 SV=1	[more]
tr\|A0A1S3CCI7\|A0A1S3CCI7_CUCME	7.5e-15	72.58	uncharacterized protein At4g14100-like OS=Cucumis melo OX=3656 GN=LOC103498893 P...	[more]
tr\|A0A1S3CAT8\|A0A1S3CAT8_CUCME	9.8e-15	72.58	uncharacterized protein At4g14100-like OS=Cucumis melo OX=3656 GN=LOC103498894 P...	[more]
tr\|A0A1S3CBB2\|A0A1S3CBB2_CUCME	4.9e-14	70.97	uncharacterized protein At4g14100-like OS=Cucumis melo OX=3656 GN=LOC103498895 P...	[more]
tr\|E5GB54\|E5GB54_CUCME	4.9e-14	70.97	Glycosyl transferase OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

BLAST of Cla97C06G110980 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q67YC9\|Y4141_ARATH	1.3e-09	64.29	Uncharacterized protein At4g14100 OS=Arabidopsis thaliana OX=3702 GN=At4g14100 P...	[more]

BLAST of Cla97C06G110980 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G14100.1	7.1e-11	64.29	transferases, transferring glycosyl groups	[more]
AT3G23760.1	1.6e-10	87.10	FUNCTIONS IN: molecular_function unknown	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR038941	At4g14100-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005773	vacuole
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C06G110980.1	Cla97C06G110980.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR33880:SF9	SUBFAMILY NOT NAMED	coord: 132..164
IPR038941	At4g14100-like	PANTHER	PTHR33880	FAMILY NOT NAMED	coord: 132..164

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C06G110980	Cla007090	Watermelon (97103) v1	wmwmbB407
Cla97C06G110980	Csa6G091300	Cucumber (Chinese Long) v2	cuwmbB468
Cla97C06G110980	MELO3C022360	Melon (DHL92) v3.5.1	mewmbB127
Cla97C06G110980	ClCG06G001710	Watermelon (Charleston Gray)	wcgwmbB273
Cla97C06G110980	CSPI06G07310	Wild cucumber (PI 183967)	cpiwmbB495
Cla97C06G110980	Cucsa.349180	Cucumber (Gy14) v1	cgywmbB596
Cla97C06G110980	CmaCh17G013940	Cucurbita maxima (Rimu)	cmawmbB369
Cla97C06G110980	CmoCh17G013450	Cucurbita moschata (Rifu)	cmowmbB354
Cla97C06G110980	Lsi09G017720	Bottle gourd (USVL1VR-Ls)	lsiwmbB026
Cla97C06G110980	CsGy6G007320	Cucumber (Gy14) v2	cgybwmbB446
Cla97C06G110980	MELO3C022360.2	Melon (DHL92) v3.6.1	medwmbB118
Cla97C06G110980	Carg11556	Silver-seed gourd	carwmbB0011
Cla97C06G110980	CsaV3_6G007710	Cucumber (Chinese Long) v3	cucwmbB487
Cla97C06G110980	Bhi12G002121	Wax gourd	wgowmbB086

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C06G110980	Silver-seed gourd	carwmbB1032
Cla97C06G110980	Cucurbita maxima (Rimu)	cmawmbB922
Cla97C06G110980	Cucurbita moschata (Rifu)	cmowmbB897