Cla97C05G102570 (gene) Watermelon (97103) v2

Overview
NameCla97C05G102570
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr05 : 30818272 .. 30818853 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGTTTTGTATGTGCCTGGCTCCCTGTATGCCATTTGTAGAGCCCATCGGATTCCGATGGGCCTCCGCATATGGCGTATGAGGAGCCATGCATATGTCTAATTTCACTATCTTCTCCTTGTGAATTTTTGTAATTAGGGTTTCATTTCAAACTCCCCCAAACCCTCGAAAATTAGGGTTTTGGTCAAATTTTTCAGCTGGGGTGTGGATGATGAAGAAAAGGGGTTAAAAAGTAAAAGTTTCTCTGGGGGGGATTATTTATTAATAACCCAAATTTTGCAGGAAAACGAGGAGTCATTGCAGAGAAGAACCGAAGAAAAACAAATCTACCGTGGATCTATTGGCTCAAATTGACGGTAAATTAACTTCAAAACCCTTTTCTAATTTTAATTTTTTATTTACAATTTATAATTTCAATTGTATATATTGTGATGAACTGACACGCCATAGAAGTTATAAATAAGTTAGAAATTTTCTATGTGTTTTTTAGTTCATCGGCGGCCGTTCATCTCATCGCACGCTTTGTCTCCTCTTTTCACCCCTTTCTCTTCTCCATATCTCTGTCTCTGCCATATTTAA

mRNA sequence

ATGCTTGTTTTGTATGTGCCTGGCTCCCTGTATGCCATTTGTAGAGCCCATCGGATTCCGATGGGCCTCCGCATATGGCGTATGAGGAGCCATGCATATGGTTTCATTTCAAACTCCCCCAAACCCTCGAAAATTAGGGTTTTGGTCAAATTTTTCAGCTGGGGTGTGGATGATGAAGAAAAGGGGAAAACGAGGAGTCATTGCAGAGAAGAACCGAAGAAAAACAAATCTACCGTGGATCTATTGGCTCAAATTGACGTTCATCGGCGGCCGTTCATCTCATCGCACGCTTTGTCTCCTCTTTTCACCCCTTTCTCTTCTCCATATCTCTGTCTCTGCCATATTTAA

Coding sequence (CDS)

ATGCTTGTTTTGTATGTGCCTGGCTCCCTGTATGCCATTTGTAGAGCCCATCGGATTCCGATGGGCCTCCGCATATGGCGTATGAGGAGCCATGCATATGGTTTCATTTCAAACTCCCCCAAACCCTCGAAAATTAGGGTTTTGGTCAAATTTTTCAGCTGGGGTGTGGATGATGAAGAAAAGGGGAAAACGAGGAGTCATTGCAGAGAAGAACCGAAGAAAAACAAATCTACCGTGGATCTATTGGCTCAAATTGACGTTCATCGGCGGCCGTTCATCTCATCGCACGCTTTGTCTCCTCTTTTCACCCCTTTCTCTTCTCCATATCTCTGTCTCTGCCATATTTAA

Protein sequence

MLVLYVPGSLYAICRAHRIPMGLRIWRMRSHAYGFISNSPKPSKIRVLVKFFSWGVDDEEKGKTRSHCREEPKKNKSTVDLLAQIDVHRRPFISSHALSPLFTPFSSPYLCLCHI
Homology
[Close]
BLAST of Cla97C05G102570 vs. NCBI nr
Match: PNT22621.1 (hypothetical protein POPTR_008G040900v3 [Populus trichocarpa])

HSP 1 Score: 57.4 bits (137), Expect = 3.8e-05
Identity = 26/34 (76.47%), Postives = 28/34 (82.35%), Query Frame = 0 

Query: 3  VLYVPGSLYAICRAHRIPMGLRIWRMRSHAYGFI 37
          +LYVPGSLYAICRA RI  GLR WRMRSHAY  +
Sbjct: 15 ILYVPGSLYAICRAQRILDGLRGWRMRSHAYSHV 48

[Close]
BLAST of Cla97C05G102570 vs. TrEMBL
Match: tr|A0A2K1ZBG5|A0A2K1ZBG5_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_008G040900v3 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.5e-05
Identity = 26/34 (76.47%), Postives = 28/34 (82.35%), Query Frame = 0 

Query: 3  VLYVPGSLYAICRAHRIPMGLRIWRMRSHAYGFI 37
          +LYVPGSLYAICRA RI  GLR WRMRSHAY  +
Sbjct: 15 ILYVPGSLYAICRAQRILDGLRGWRMRSHAYSHV 48

The following BLAST results are available for this feature:
BLAST of Cla97C05G102570 vs. NCBI nr
Match NameE-valueIdentityDescription
PNT22621.13.8e-0576.47hypothetical protein POPTR_008G040900v3 [Populus trichocarpa][more]
BLAST of Cla97C05G102570 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2K1ZBG5|A0A2K1ZBG5_POPTR2.5e-0576.47Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_008G040900v3 PE=... [more]
BLAST of Cla97C05G102570 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C05G102570 vs. TAIR10
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G102570.1Cla97C05G102570.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C05G102570Silver-seed gourdcarwmbB0507
Cla97C05G102570Silver-seed gourdcarwmbB0878
Cla97C05G102570Cucumber (Gy14) v2cgybwmbB365
Cla97C05G102570Cucurbita maxima (Rimu)cmawmbB423
Cla97C05G102570Cucumber (Gy14) v1cgywmbB533
Cla97C05G102570Cucurbita maxima (Rimu)cmawmbB758
Cla97C05G102570Cucurbita moschata (Rifu)cmowmbB403
Cla97C05G102570Cucurbita moschata (Rifu)cmowmbB729
Cla97C05G102570Wild cucumber (PI 183967)cpiwmbB402
Cla97C05G102570Cucumber (Chinese Long) v3cucwmbB398
Cla97C05G102570Cucumber (Chinese Long) v2cuwmbB383
Cla97C05G102570Bottle gourd (USVL1VR-Ls)lsiwmbB284
Cla97C05G102570Melon (DHL92) v3.6.1medwmbB056
Cla97C05G102570Melon (DHL92) v3.5.1mewmbB060
Cla97C05G102570Watermelon (Charleston Gray)wcgwmbB229
Cla97C05G102570Watermelon (97103) v1wmwmbB207
Cla97C05G102570Wax gourdwgowmbB532