Cla97C05G101090 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G101090
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Leucine-rich repeat extensin-like protein 3
Location	Cla97Chr05 : 29750212 .. 29750556 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACATCAAATACAATGATTTCGAAGTCAAATTGCCTCCTAAGCTTTTTACTAAGGAACTCGATGTCATTTTCCTAAACAATAATAGATTCACTTCTTACATTCTTGAAAATTTTGGGGAATCGACAGCGTCAGTGATTGTGATTGCCGACAACAATTTTACAGGATGTATTATAATGGACATTTCTTTGAATTTGTTGACTAGCGTTATGCAGGATGGTTTGTGCAATTTAGCCAAATTAGTTAATTTCACATTTTCTTACAATTTCTTCAATGGCAAGGTAATAGGTGTGTACCATAAAATAGGAAGGATGTTTTGTTGGATGATGCTGACAATTGCTTGA

mRNA sequence

ATGGACATCAAATACAATGATTTCGAAGTCAAATTGCCTCCTAAGCTTTTTACTAAGGAACTCGATGTCATTTTCCTAAACAATAATAGATTCACTTCTTACATTCTTGAAAATTTTGGGGAATCGACAGCGTCAGTGATTGTGATTGCCGACAACAATTTTACAGGATGTATTATAATGGACATTTCTTTGAATTTGTTGACTAGCGTTATGCAGGATGGTTTGTGCAATTTAGCCAAATTAGTTAATTTCACATTTTCTTACAATTTCTTCAATGGCAAGGTAATAGGTGTGTACCATAAAATAGGAAGGATGTTTTGTTGGATGATGCTGACAATTGCTTGA

Coding sequence (CDS)

ATGGACATCAAATACAATGATTTCGAAGTCAAATTGCCTCCTAAGCTTTTTACTAAGGAACTCGATGTCATTTTCCTAAACAATAATAGATTCACTTCTTACATTCTTGAAAATTTTGGGGAATCGACAGCGTCAGTGATTGTGATTGCCGACAACAATTTTACAGGATGTATTATAATGGACATTTCTTTGAATTTGTTGACTAGCGTTATGCAGGATGGTTTGTGCAATTTAGCCAAATTAGTTAATTTCACATTTTCTTACAATTTCTTCAATGGCAAGGTAATAGGTGTGTACCATAAAATAGGAAGGATGTTTTGTTGGATGATGCTGACAATTGCTTGA

Protein sequence

MDIKYNDFEVKLPPKLFTKELDVIFLNNNRFTSYILENFGESTASVIVIADNNFTGCIIMDISLNLLTSVMQDGLCNLAKLVNFTFSYNFFNGKVIGVYHKIGRMFCWMMLTIA

Homology

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BLAST of Cla97C05G101090 vs. NCBI nr
Match: XP_016472485.1 (PREDICTED: leucine-rich repeat extensin-like protein 4, partial [Nicotiana tabacum])

HSP 1 Score: 74.3 bits (181), Expect = 2.9e-10
Identity = 33/58 (56.90%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 1  MDIKYNDFEVKLPPKLFTKELDVIFLNNNRFTSYILENFGESTASVIVIADNNFTGCI 59
          +D+++N+FE  LP +LF+K+LD IF+NNNR TS I  N G STASV+V A+N F GC+
Sbjct: 14 LDLRFNEFEGPLPSQLFSKDLDAIFVNNNRLTSMIPSNLGSSTASVVVFANNYFGGCL 71

[Close]

BLAST of Cla97C05G101090 vs. NCBI nr
Match: KDO52192.1 (hypothetical protein CISIN_1g035831mg, partial [Citrus sinensis])

HSP 1 Score: 70.1 bits (170), Expect = 5.5e-09
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 1   MDIKYNDFEVKLPPKLFTKELDVIFLNNNRFTSYILENFGESTASVIVIADNNFTGCI 59
           +D++YN+FE +LP  LF  +LD +FLNNNRF+  I E  G ST SV+  A NNF GCI
Sbjct: 192 LDLRYNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCI 249

[Close]

BLAST of Cla97C05G101090 vs. NCBI nr
Match: KRH39259.1 (hypothetical protein GLYMA_09G188600 [Glycine max])

HSP 1 Score: 70.1 bits (170), Expect = 5.5e-09
Identity = 30/58 (51.72%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 1   MDIKYNDFEVKLPPKLFTKELDVIFLNNNRFTSYILENFGESTASVIVIADNNFTGCI 59
           +D+++N+FE  +P +LF K+LD IF+N+NRF   + ENFG S  SVIV+A+N F GC+
Sbjct: 188 LDLRFNEFEGTVPKELFDKDLDAIFINDNRFVFDLPENFGNSPVSVIVLANNRFHGCV 245

[Close]

BLAST of Cla97C05G101090 vs. NCBI nr
Match: XP_015386198.1 (pollen-specific leucine-rich repeat extensin-like protein 3 [Citrus sinensis])

HSP 1 Score: 70.1 bits (170), Expect = 5.5e-09
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 1   MDIKYNDFEVKLPPKLFTKELDVIFLNNNRFTSYILENFGESTASVIVIADNNFTGCI 59
           +D++YN+FE +LP  LF  +LD +FLNNNRF+  I E  G ST SV+  A NNF GCI
Sbjct: 192 LDLRYNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCI 249

[Close]

BLAST of Cla97C05G101090 vs. NCBI nr
Match: GAY58247.1 (hypothetical protein CUMW_185590 [Citrus unshiu])

HSP 1 Score: 70.1 bits (170), Expect = 5.5e-09
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 1   MDIKYNDFEVKLPPKLFTKELDVIFLNNNRFTSYILENFGESTASVIVIADNNFTGCI 59
           +D++YN+FE +LP  LF  +LD +FLNNNRF+  I E  G ST SV+  A NNF GCI
Sbjct: 192 LDLRYNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCI 249

[Close]

BLAST of Cla97C05G101090 vs. TrEMBL
Match: tr|A0A1S4A780|A0A1S4A780_TOBAC (leucine-rich repeat extensin-like protein 4 OS=Nicotiana tabacum OX=4097 GN=LOC107794501 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.9e-10
Identity = 33/58 (56.90%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 1  MDIKYNDFEVKLPPKLFTKELDVIFLNNNRFTSYILENFGESTASVIVIADNNFTGCI 59
          +D+++N+FE  LP +LF+K+LD IF+NNNR TS I  N G STASV+V A+N F GC+
Sbjct: 14 LDLRFNEFEGPLPSQLFSKDLDAIFVNNNRLTSMIPSNLGSSTASVVVFANNYFGGCL 71

[Close]

BLAST of Cla97C05G101090 vs. TrEMBL
Match: tr|A0A0D9WDF9|A0A0D9WDF9_9ORYZ (Uncharacterized protein OS=Leersia perrieri OX=77586 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.3e-09
Identity = 32/58 (55.17%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 1   MDIKYNDFEVKLPPKLFTKELDVIFLNNNRFTSYILENFGESTASVIVIADNNFTGCI 59
           +D++YN+FE  +P +LF K LD IFLN+NR    + +NFG S ASVIV+ADN+F GC+
Sbjct: 171 LDLRYNEFEGAVPSELFDKNLDAIFLNHNRLRFSLPDNFGNSPASVIVLADNDFGGCL 228

[Close]

BLAST of Cla97C05G101090 vs. TrEMBL
Match: tr|A0A0R0IHR9|A0A0R0IHR9_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_09G188600 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.7e-09
Identity = 30/58 (51.72%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 1   MDIKYNDFEVKLPPKLFTKELDVIFLNNNRFTSYILENFGESTASVIVIADNNFTGCI 59
           +D+++N+FE  +P +LF K+LD IF+N+NRF   + ENFG S  SVIV+A+N F GC+
Sbjct: 188 LDLRFNEFEGTVPKELFDKDLDAIFINDNRFVFDLPENFGNSPVSVIVLANNRFHGCV 245

[Close]

BLAST of Cla97C05G101090 vs. TrEMBL
Match: tr|A0A2H5Q0S3|A0A2H5Q0S3_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_185590 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.7e-09
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 1   MDIKYNDFEVKLPPKLFTKELDVIFLNNNRFTSYILENFGESTASVIVIADNNFTGCI 59
           +D++YN+FE +LP  LF  +LD +FLNNNRF+  I E  G ST SV+  A NNF GCI
Sbjct: 192 LDLRYNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCI 249

[Close]

BLAST of Cla97C05G101090 vs. TrEMBL
Match: tr|A0A067ELY8|A0A067ELY8_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g035831mg PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.7e-09
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 1   MDIKYNDFEVKLPPKLFTKELDVIFLNNNRFTSYILENFGESTASVIVIADNNFTGCI 59
           +D++YN+FE +LP  LF  +LD +FLNNNRF+  I E  G ST SV+  A NNF GCI
Sbjct: 192 LDLRYNNFEGELPCDLFDMKLDALFLNNNRFSYSIPEKLGRSTVSVVTFAHNNFNGCI 249

[Close]

BLAST of Cla97C05G101090 vs. Swiss-Prot
Match: sp|Q9T0K5|LRX3_ARATH (Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=LRX3 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-07
Identity = 25/44 (56.82%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 15  KLFTKELDVIFLNNNRFTSYILENFGESTASVIVIADNNFTGCI 59
           +LF+K+LD IF+N+NRF   + ENFG+S  SVIV+A+N F GC+
Sbjct: 205 ELFSKDLDAIFINHNRFRFELPENFGDSPVSVIVLANNRFHGCV 248

[Close]

BLAST of Cla97C05G101090 vs. Swiss-Prot
Match: sp|Q9LHF1|LRX4_ARATH (Leucine-rich repeat extensin-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=LRX4 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-07
Identity = 26/44 (59.09%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 15  KLFTKELDVIFLNNNRFTSYILENFGESTASVIVIADNNFTGCI 59
           +LF+K LD IF+N+NRF   + ENFG+S  SVIV+A+N+F GCI
Sbjct: 213 ELFSKNLDAIFINHNRFRFELPENFGDSPVSVIVLANNHFHGCI 256

[Close]

BLAST of Cla97C05G101090 vs. Swiss-Prot
Match: sp|O48809|LRX2_ARATH (Leucine-rich repeat extensin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=LRX2 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.3e-06
Identity = 28/49 (57.14%), Postives = 32/49 (65.31%), Query Frame = 0


Query: 16  LFTKELDVIFLNNNRFTSYILENFGESTASVIVIADNNFTGCIIMDISL 65
           LF KELD IFLN+NRF   I EN G S  S +V+ADN+  GCI   I L
Sbjct: 193 LFDKELDAIFLNHNRFMFGIPENMGNSPVSALVLADNDLGGCIPGSIGL 241

[Close]

BLAST of Cla97C05G101090 vs. TAIR10
Match: AT3G19320.1 (Leucine-rich repeat (LRR) family protein)

HSP 1 Score: 57.4 bits (137), Expect = 6.7e-09
Identity = 24/58 (41.38%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 1   MDIKYNDFEVKLPPKLFTKELDVIFLNNNRFTSYILENFGESTASVIVIADNNFTGCI 59
           +D+++N F   +PP++F  +LDV+F+NNN     + EN G  TA  +  A+N FTG I
Sbjct: 253 LDLRFNSFSGSVPPQVFNLDLDVLFINNNNLVQRLPENLGSITALYLTFANNRFTGPI 310

[Close]

BLAST of Cla97C05G101090 vs. TAIR10
Match: AT3G24480.1 (Leucine-rich repeat (LRR) family protein)

HSP 1 Score: 57.0 bits (136), Expect = 8.8e-09
Identity = 26/44 (59.09%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 15  KLFTKELDVIFLNNNRFTSYILENFGESTASVIVIADNNFTGCI 59
           +LF+K LD IF+N+NRF   + ENFG+S  SVIV+A+N+F GCI
Sbjct: 213 ELFSKNLDAIFINHNRFRFELPENFGDSPVSVIVLANNHFHGCI 256

[Close]

BLAST of Cla97C05G101090 vs. TAIR10
Match: AT4G13340.1 (Leucine-rich repeat (LRR) family protein)

HSP 1 Score: 57.0 bits (136), Expect = 8.8e-09
Identity = 25/44 (56.82%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 15  KLFTKELDVIFLNNNRFTSYILENFGESTASVIVIADNNFTGCI 59
           +LF+K+LD IF+N+NRF   + ENFG+S  SVIV+A+N F GC+
Sbjct: 205 ELFSKDLDAIFINHNRFRFELPENFGDSPVSVIVLANNRFHGCV 248

[Close]

BLAST of Cla97C05G101090 vs. TAIR10
Match: AT1G49750.1 (Leucine-rich repeat (LRR) family protein)

HSP 1 Score: 54.3 bits (129), Expect = 5.7e-08
Identity = 23/58 (39.66%), Postives = 36/58 (62.07%), Query Frame = 0


Query: 1   MDIKYNDFEVKLPPKLFTKELDVIFLNNNRFTSYILENFGESTASVIVIADNNFTGCI 59
           +D+++N F   +PP++F  +LDV+F+NNN     +  N G  TA  +  A+N FTG I
Sbjct: 251 LDLRFNSFSGSVPPQVFNLDLDVLFINNNNLVQKLPLNLGSITALYLTFANNRFTGPI 308

[Close]

BLAST of Cla97C05G101090 vs. TAIR10
Match: AT1G62440.1 (leucine-rich repeat/extensin 2)

HSP 1 Score: 53.1 bits (126), Expect = 1.3e-07
Identity = 28/49 (57.14%), Postives = 32/49 (65.31%), Query Frame = 0


Query: 16  LFTKELDVIFLNNNRFTSYILENFGESTASVIVIADNNFTGCIIMDISL 65
           LF KELD IFLN+NRF   I EN G S  S +V+ADN+  GCI   I L
Sbjct: 233 LFDKELDAIFLNHNRFMFGIPENMGNSPVSALVLADNDLGGCIPGSIGL 281

The following BLAST results are available for this feature:

BLAST of Cla97C05G101090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016472485.1	2.9e-10	56.90	PREDICTED: leucine-rich repeat extensin-like protein 4, partial [Nicotiana tabac...	[more]
KDO52192.1	5.5e-09	55.17	hypothetical protein CISIN_1g035831mg, partial [Citrus sinensis]	[more]
KRH39259.1	5.5e-09	51.72	hypothetical protein GLYMA_09G188600 [Glycine max]	[more]
XP_015386198.1	5.5e-09	55.17	pollen-specific leucine-rich repeat extensin-like protein 3 [Citrus sinensis]	[more]
GAY58247.1	5.5e-09	55.17	hypothetical protein CUMW_185590 [Citrus unshiu]	[more]

BLAST of Cla97C05G101090 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4A780\|A0A1S4A780_TOBAC	1.9e-10	56.90	leucine-rich repeat extensin-like protein 4 OS=Nicotiana tabacum OX=4097 GN=LOC1...	[more]
tr\|A0A0D9WDF9\|A0A0D9WDF9_9ORYZ	1.3e-09	55.17	Uncharacterized protein OS=Leersia perrieri OX=77586 PE=4 SV=1	[more]
tr\|A0A0R0IHR9\|A0A0R0IHR9_SOYBN	3.7e-09	51.72	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_09G188600 PE=4 SV=1	[more]
tr\|A0A2H5Q0S3\|A0A2H5Q0S3_CITUN	3.7e-09	55.17	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_185590 PE=4 SV=1	[more]
tr\|A0A067ELY8\|A0A067ELY8_CITSI	3.7e-09	55.17	Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g035831m...	[more]

BLAST of Cla97C05G101090 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9T0K5\|LRX3_ARATH	1.6e-07	56.82	Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
sp\|Q9LHF1\|LRX4_ARATH	1.6e-07	59.09	Leucine-rich repeat extensin-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
sp\|O48809\|LRX2_ARATH	2.3e-06	57.14	Leucine-rich repeat extensin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]

BLAST of Cla97C05G101090 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19320.1	6.7e-09	41.38	Leucine-rich repeat (LRR) family protein	[more]
AT3G24480.1	8.8e-09	59.09	Leucine-rich repeat (LRR) family protein	[more]
AT4G13340.1	8.8e-09	56.82	Leucine-rich repeat (LRR) family protein	[more]
AT1G49750.1	5.7e-08	39.66	Leucine-rich repeat (LRR) family protein	[more]
AT1G62440.1	1.3e-07	57.14	leucine-rich repeat/extensin 2	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	LRR_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G101090.1	Cla97C05G101090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	G3DSA:3.80.10.10		coord: 1..105 e-value: 1.2E-9 score: 39.4
None	No IPR available	PANTHER	PTHR44852	FAMILY NOT NAMED	coord: 1..59
None	No IPR available	PANTHER	PTHR44852:SF1	SUBFAMILY NOT NAMED	coord: 60..94 coord: 1..59
None	No IPR available	PANTHER	PTHR44852	FAMILY NOT NAMED	coord: 60..94
None	No IPR available	SUPERFAMILY	SSF52058	L domain-like	coord: 3..93

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G101090	Bhi09G001722	Wax gourd	wgowmbB584

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G101090	Watermelon (97103) v2	wmbwmbB142
Cla97C05G101090	Silver-seed gourd	carwmbB0107
Cla97C05G101090	Silver-seed gourd	carwmbB0807
Cla97C05G101090	Cucumber (Gy14) v2	cgybwmbB127
Cla97C05G101090	Cucumber (Gy14) v1	cgywmbB408
Cla97C05G101090	Cucurbita maxima (Rimu)	cmawmbB026
Cla97C05G101090	Cucurbita maxima (Rimu)	cmawmbB181
Cla97C05G101090	Cucurbita maxima (Rimu)	cmawmbB479
Cla97C05G101090	Cucurbita moschata (Rifu)	cmowmbB014
Cla97C05G101090	Cucurbita moschata (Rifu)	cmowmbB166
Cla97C05G101090	Cucurbita moschata (Rifu)	cmowmbB461
Cla97C05G101090	Wild cucumber (PI 183967)	cpiwmbB137
Cla97C05G101090	Cucumber (Chinese Long) v3	cucwmbB137
Cla97C05G101090	Cucumber (Chinese Long) v2	cuwmbB135
Cla97C05G101090	Bottle gourd (USVL1VR-Ls)	lsiwmbB288
Cla97C05G101090	Bottle gourd (USVL1VR-Ls)	lsiwmbB435
Cla97C05G101090	Melon (DHL92) v3.6.1	medwmbB277
Cla97C05G101090	Melon (DHL92) v3.5.1	mewmbB293
Cla97C05G101090	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G101090	Watermelon (Charleston Gray)	wcgwmbB327
Cla97C05G101090	Watermelon (97103) v1	wmwmbB091
Cla97C05G101090	Watermelon (97103) v1	wmwmbB207
Cla97C05G101090	Wax gourd	wgowmbB301