Cla97C05G100910 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G100910
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Cytochrome P450
Location	Cla97Chr05 : 29613138 .. 29613380 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGACGGCGAAGGTGTAGGATCAGGTGCTTGATAAATGGATCGAGGAGCATCGAGAAATTAAGAAGAAGAAGAAAAAGAAGAATGAAGAGGAGAGAAAGGAGGAAGATTTCATGGATGTGATGCTTTCCACTGTCGAACACCATGGAGAGTTCCCTGGTTTTGATGTCGATACAGTCACCAAATCTACTTGTTTGGTAACCATATATTTCATTCTTATTACTCTAATCAACTATTGA

mRNA sequence

ATGAAGAAGACGGCGAAGGTGCTTGATAAATGGATCGAGGAGCATCGAGAAATTAAGAAGAAGAAGAAAAAGAAGAATGAAGAGGAGAGAAAGGAGGAAGATTTCATGGATGTGATGCTTTCCACTGTCGAACACCATGGAGAGTTCCCTGGTTTTGATGTCGATACAGTCACCAAATCTACTTGTTTGGTAACCATATATTTCATTCTTATTACTCTAATCAACTATTGA

Coding sequence (CDS)

ATGAAGAAGACGGCGAAGGTGCTTGATAAATGGATCGAGGAGCATCGAGAAATTAAGAAGAAGAAGAAAAAGAAGAATGAAGAGGAGAGAAAGGAGGAAGATTTCATGGATGTGATGCTTTCCACTGTCGAACACCATGGAGAGTTCCCTGGTTTTGATGTCGATACAGTCACCAAATCTACTTGTTTGGTAACCATATATTTCATTCTTATTACTCTAATCAACTATTGA

Protein sequence

MKKTAKVLDKWIEEHREIKKKKKKKNEEERKEEDFMDVMLSTVEHHGEFPGFDVDTVTKSTCLVTIYFILITLINY

Homology

[Close]

BLAST of Cla97C05G100910 vs. NCBI nr
Match: XP_022988070.1 (cytochrome P450 CYP82D47-like [Cucurbita maxima])

HSP 1 Score: 64.7 bits (156), Expect = 1.6e-07
Identity = 36/70 (51.43%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 1   MKKTAKVLD----KWIEEHREIXXXXXXXXXXXXXXXXXMDVMLSTVEHHGEFPGFDVDT 60
           MK+TAKVLD    KW+EEHRE                  MD MLST+ H GE  GFDVDT
Sbjct: 255 MKRTAKVLDEMLTKWVEEHRE-KKKNLGEGGVNTMEHDFMDGMLSTINHAGELAGFDVDT 314

Query: 61  VTKSTCLVTI 67
           VTK+TCL  +
Sbjct: 315 VTKATCLTVL 323

[Close]

BLAST of Cla97C05G100910 vs. NCBI nr
Match: XP_023516810.1 (cytochrome P450 CYP82D47-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 60.8 bits (146), Expect = 2.2e-06
Identity = 35/70 (50.00%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 1   MKKTAKVLD----KWIEEHREIXXXXXXXXXXXXXXXXXMDVMLSTVEHHGEFPGFDVDT 60
           MK+TAKVLD    KW+EEHRE                  MD MLST+   GE  GFDVDT
Sbjct: 251 MKRTAKVLDEMLAKWVEEHRE-KKKNLGEGGVITMEHDFMDGMLSTINGAGELAGFDVDT 310

Query: 61  VTKSTCLVTI 67
           VTK+TCL  +
Sbjct: 311 VTKATCLTVL 319

[Close]

BLAST of Cla97C05G100910 vs. NCBI nr
Match: XP_022935737.1 (cytochrome P450 CYP82D47-like [Cucurbita moschata])

HSP 1 Score: 59.3 bits (142), Expect = 6.5e-06
Identity = 35/70 (50.00%), Postives = 37/70 (52.86%), Query Frame = 0


Query: 1   MKKTAKVLD----KWIEEHREIXXXXXXXXXXXXXXXXXMDVMLSTVEHHGEFPGFDVDT 60
           M KTAKVLD    KWIEEHRE                  MDVMLS V  HG   GFD DT
Sbjct: 290 MNKTAKVLDQMLTKWIEEHRE-KNKNWGEGGVETEEQDFMDVMLSPVSDHGGLGGFDADT 349

Query: 61  VTKSTCLVTI 67
           VTK+TC   +
Sbjct: 350 VTKATCFAMV 358

[Close]

BLAST of Cla97C05G100910 vs. NCBI nr
Match: XP_022137230.1 (cytochrome P450 CYP82D47-like [Momordica charantia])

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-05
Identity = 35/70 (50.00%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 1   MKKTAKVL----DKWIEEHREIXXXXXXXXXXXXXXXXXMDVMLSTVEHHGEFPGFDVDT 60
           MKK  KVL    DKWIEEHR+                  MDVMLSTVE  G+  G+DV+T
Sbjct: 208 MKKAGKVLDEVFDKWIEEHRK----KKNSGEMEMKEQDFMDVMLSTVEDDGQLFGYDVET 267

Query: 61  VTKSTCLVTI 67
           VTK+TCL  I
Sbjct: 268 VTKATCLTMI 273

[Close]

BLAST of Cla97C05G100910 vs. NCBI nr
Match: XP_022976390.1 (cytochrome P450 CYP82D47-like [Cucurbita maxima])

HSP 1 Score: 57.8 bits (138), Expect = 1.9e-05
Identity = 34/70 (48.57%), Postives = 38/70 (54.29%), Query Frame = 0


Query: 1   MKKTAKVLD----KWIEEHREIXXXXXXXXXXXXXXXXXMDVMLSTVEHHGEFPGFDVDT 60
           M KTAKVLD    KWI+EHRE                  MDVMLS V +HG    FDVDT
Sbjct: 255 MNKTAKVLDQMLTKWIQEHRE-KTKNWGECGVETKEQDFMDVMLSPVSNHGGLGDFDVDT 314

Query: 61  VTKSTCLVTI 67
           VTK+TC   +
Sbjct: 315 VTKATCFAMV 323

[Close]

BLAST of Cla97C05G100910 vs. TrEMBL
Match: tr|A0A1S3CMB9|A0A1S3CMB9_CUCME (cytochrome P450 CYP82D47-like OS=Cucumis melo OX=3656 GN=LOC103502574 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.3e-04
Identity = 29/67 (43.28%), Postives = 38/67 (56.72%), Query Frame = 0


Query: 1   MKKTAKVL----DKWIEEHREIXXXXXXXXXXXXXXXXXMDVMLSTVEHHGEFPGFDVDT 60
           MKKTAK+L    DKW++EHR+                  MDV+LS V+   +FP +D DT
Sbjct: 255 MKKTAKILDEVFDKWLQEHRQ-------RRKFEESENDFMDVLLSNVKDAEQFPNYDADT 314

Query: 61  VTKSTCL 64
           V KS+CL
Sbjct: 315 VIKSSCL 314

[Close]

BLAST of Cla97C05G100910 vs. TrEMBL
Match: tr|A0A1S3CT10|A0A1S3CT10_CUCME (cytochrome P450 CYP82D47-like OS=Cucumis melo OX=3656 GN=LOC103503993 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.3e-04
Identity = 31/70 (44.29%), Postives = 39/70 (55.71%), Query Frame = 0


Query: 1   MKKTAKVLD----KWIEEHREIXXXXXXXXXXXXXXXXXMDVMLSTVEHHGEFPGFDVDT 60
           MKKTAK+LD    KW+ EH++                  MDVMLSTV+   E  G+DV T
Sbjct: 259 MKKTAKILDKTLHKWLIEHQQ-KRDYNNCGDAVHKEEDFMDVMLSTVQDVEELAGYDVGT 318

Query: 61  VTKSTCLVTI 67
           +TK+TCL  I
Sbjct: 319 ITKATCLTLI 327

[Close]

BLAST of Cla97C05G100910 vs. TrEMBL
Match: tr|A0A1S4E5P0|A0A1S4E5P0_CUCME (cytochrome P450 CYP82D47-like OS=Cucumis melo OX=3656 GN=LOC107992225 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.3e-04
Identity = 31/70 (44.29%), Postives = 39/70 (55.71%), Query Frame = 0


Query: 1   MKKTAKVLDK----WIEEHREIXXXXXXXXXXXXXXXXXMDVMLSTVEHHGEFPGFDVDT 60
           MKKTAK+LDK    W+ EH++                  MDVMLSTV+   E  G+DV T
Sbjct: 97  MKKTAKILDKTLHNWLIEHQQ-KRNYNNCGDVVHKEEDFMDVMLSTVQDVEELTGYDVGT 156

Query: 61  VTKSTCLVTI 67
           +TK+TCL  I
Sbjct: 157 ITKATCLTLI 165

[Close]

BLAST of Cla97C05G100910 vs. TrEMBL
Match: tr|A0A0A0LG08|A0A0A0LG08_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G853170 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.3e-04
Identity = 31/70 (44.29%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 1   MKKTAKVLD----KWIEEHREIXXXXXXXXXXXXXXXXXMDVMLSTVEHHGEFPGFDVDT 60
           MKKTAK+LD    KW+ EH++                  MDVMLSTV++  E  G+DV T
Sbjct: 262 MKKTAKILDKTLHKWLIEHQQ-KRNCNNCDDVVHKEEDFMDVMLSTVQNVEELIGYDVGT 321

Query: 61  VTKSTCLVTI 67
           +TK+TCL  I
Sbjct: 322 ITKATCLTLI 330

[Close]

BLAST of Cla97C05G100910 vs. TrEMBL
Match: tr|A0A0A0LGF6|A0A0A0LGF6_CUCSA (Cytochrome P450 OS=Cucumis sativus OX=3659 GN=Csa_3G852610 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.3e-04
Identity = 30/70 (42.86%), Postives = 39/70 (55.71%), Query Frame = 0


Query: 1   MKKTAKVL----DKWIEEHREIXXXXXXXXXXXXXXXXXMDVMLSTVEHHGEFPGFDVDT 60
           MKKTAK++    DKW+ EHRE                  MD+MLS  +   +F G+DVDT
Sbjct: 253 MKKTAKIMDEMHDKWLREHRE----KRNSDGLVIEDQDLMDIMLSITKDE-DFSGYDVDT 312

Query: 61  VTKSTCLVTI 67
           + KSTCLV +
Sbjct: 313 IIKSTCLVVV 317

[Close]

BLAST of Cla97C05G100910 vs. Swiss-Prot
Match: sp|H2DH24|C7D47_PANGI (Cytochrome P450 CYP82D47 OS=Panax ginseng OX=4054 PE=2 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 7.1e-04
Identity = 30/70 (42.86%), Postives = 36/70 (51.43%), Query Frame = 0


Query: 1   MKKTAKVLDK----WIEEHREIXXXXXXXXXXXXXXXXXMDVMLSTVEHHGEFPGFDVDT 60
           MKKTAK +D     W+EEHR                   MDVMLS V+ + +  GFD D 
Sbjct: 135 MKKTAKEMDNIVSGWLEEHR----MKRNSSDEDNTQQDFMDVMLSAVK-NVDLCGFDADV 194

Query: 61  VTKSTCLVTI 67
           V KSTC+V I
Sbjct: 195 VIKSTCMVLI 199

The following BLAST results are available for this feature:

BLAST of Cla97C05G100910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022988070.1	1.6e-07	51.43	cytochrome P450 CYP82D47-like [Cucurbita maxima]	[more]
XP_023516810.1	2.2e-06	50.00	cytochrome P450 CYP82D47-like [Cucurbita pepo subsp. pepo]	[more]
XP_022935737.1	6.5e-06	50.00	cytochrome P450 CYP82D47-like [Cucurbita moschata]	[more]
XP_022137230.1	1.1e-05	50.00	cytochrome P450 CYP82D47-like [Momordica charantia]	[more]
XP_022976390.1	1.9e-05	48.57	cytochrome P450 CYP82D47-like [Cucurbita maxima]	[more]

BLAST of Cla97C05G100910 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CMB9\|A0A1S3CMB9_CUCME	5.3e-04	43.28	cytochrome P450 CYP82D47-like OS=Cucumis melo OX=3656 GN=LOC103502574 PE=3 SV=1	[more]
tr\|A0A1S3CT10\|A0A1S3CT10_CUCME	5.3e-04	44.29	cytochrome P450 CYP82D47-like OS=Cucumis melo OX=3656 GN=LOC103503993 PE=3 SV=1	[more]
tr\|A0A1S4E5P0\|A0A1S4E5P0_CUCME	5.3e-04	44.29	cytochrome P450 CYP82D47-like OS=Cucumis melo OX=3656 GN=LOC107992225 PE=4 SV=1	[more]
tr\|A0A0A0LG08\|A0A0A0LG08_CUCSA	5.3e-04	44.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G853170 PE=3 SV=1	[more]
tr\|A0A0A0LGF6\|A0A0A0LGF6_CUCSA	5.3e-04	42.86	Cytochrome P450 OS=Cucumis sativus OX=3659 GN=Csa_3G852610 PE=4 SV=1	[more]

BLAST of Cla97C05G100910 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|H2DH24\|C7D47_PANGI	7.1e-04	42.86	Cytochrome P450 CYP82D47 OS=Panax ginseng OX=4054 PE=2 SV=1	[more]

BLAST of Cla97C05G100910 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G100910.1	Cla97C05G100910.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 8..32
None	No IPR available	PANTHER	PTHR24298	FAMILY NOT NAMED	coord: 1..66
None	No IPR available	PANTHER	PTHR24298:SF210	SUBFAMILY NOT NAMED	coord: 1..66

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G100910	Bhi09G001747	Wax gourd	wgowmbB584

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G100910	Wax gourd	wgowmbB040
Cla97C05G100910	Wax gourd	wgowmbB301
Cla97C05G100910	Watermelon (97103) v2	wmbwmbB142
Cla97C05G100910	Silver-seed gourd	carwmbB0107
Cla97C05G100910	Cucumber (Gy14) v2	cgybwmbB207
Cla97C05G100910	Cucumber (Gy14) v1	cgywmbB408
Cla97C05G100910	Cucumber (Gy14) v1	cgywmbB585
Cla97C05G100910	Cucurbita maxima (Rimu)	cmawmbB026
Cla97C05G100910	Cucurbita maxima (Rimu)	cmawmbB181
Cla97C05G100910	Cucurbita maxima (Rimu)	cmawmbB479
Cla97C05G100910	Cucurbita maxima (Rimu)	cmawmbB819
Cla97C05G100910	Cucurbita moschata (Rifu)	cmowmbB014
Cla97C05G100910	Cucurbita moschata (Rifu)	cmowmbB166
Cla97C05G100910	Cucurbita moschata (Rifu)	cmowmbB461
Cla97C05G100910	Cucurbita moschata (Rifu)	cmowmbB792
Cla97C05G100910	Wild cucumber (PI 183967)	cpiwmbB137
Cla97C05G100910	Wild cucumber (PI 183967)	cpiwmbB222
Cla97C05G100910	Cucumber (Chinese Long) v3	cucwmbB137
Cla97C05G100910	Cucumber (Chinese Long) v3	cucwmbB218
Cla97C05G100910	Cucumber (Chinese Long) v2	cuwmbB135
Cla97C05G100910	Cucumber (Chinese Long) v2	cuwmbB216
Cla97C05G100910	Bottle gourd (USVL1VR-Ls)	lsiwmbB288
Cla97C05G100910	Melon (DHL92) v3.6.1	medwmbB319
Cla97C05G100910	Melon (DHL92) v3.5.1	mewmbB293
Cla97C05G100910	Melon (DHL92) v3.5.1	mewmbB332
Cla97C05G100910	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G100910	Watermelon (97103) v1	wmwmbB091
Cla97C05G100910	Watermelon (97103) v1	wmwmbB207