Cla97C05G098820 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G098820
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	RING/U-box superfamily protein, putative isoform 3
Location	Cla97Chr05 : 28019145 .. 28019444 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTACCCTGAACCAGAAGGCTATGGTCAAAGTCTACATGTCAATGGACAAGCTACTCCTGCAGAAGTTGGTCTTTCAAGCACTTCAACAAATGTTAACAGTTTTAGATGCCACAATGGCGATGGAATTGCTGAGGTATTTTGACTTCTTGTCTCATTTTTATGGTTCCGGGAAAGAGTTGTCACTTAATTATTATACAATTTGCAGGTACTATTGGCGTTGGAGAGAATTGAACAGGAGGAGCTAACTTACGAGGCATGTAATCTTTTGCTTCTTTTCAGATTTTTATCTCACTAA

mRNA sequence

ATGACTTACCCTGAACCAGAAGGCTATGGTCAAAGTCTACATGTCAATGGACAAGCTACTCCTGCAGAAGTTGGTCTTTCAAGCACTTCAACAAATGTTAACAGTTTTAGATGCCACAATGGCGATGGAATTGCTGAGGTACTATTGGCGTTGGAGAGAATTGAACAGGAGGAGCTAACTTACGAGGCATGTAATCTTTTGCTTCTTTTCAGATTTTTATCTCACTAA

Coding sequence (CDS)

ATGACTTACCCTGAACCAGAAGGCTATGGTCAAAGTCTACATGTCAATGGACAAGCTACTCCTGCAGAAGTTGGTCTTTCAAGCACTTCAACAAATGTTAACAGTTTTAGATGCCACAATGGCGATGGAATTGCTGAGGTACTATTGGCGTTGGAGAGAATTGAACAGGAGGAGCTAACTTACGAGGCATGTAATCTTTTGCTTCTTTTCAGATTTTTATCTCACTAA

Protein sequence

MTYPEPEGYGQSLHVNGQATPAEVGLSSTSTNVNSFRCHNGDGIAEVLLALERIEQEELTYEACNLLLLFRFLSH

Homology

[Close]

BLAST of Cla97C05G098820 vs. NCBI nr
Match: XP_022981972.1 (uncharacterized protein LOC111480963 [Cucurbita maxima] >XP_022981973.1 uncharacterized protein LOC111480963 [Cucurbita maxima] >XP_022981974.1 uncharacterized protein LOC111480963 [Cucurbita maxima] >XP_022981975.1 uncharacterized protein LOC111480963 [Cucurbita maxima] >XP_022981976.1 uncharacterized protein LOC111480963 [Cucurbita maxima])

HSP 1 Score: 94.4 bits (233), Expect = 1.8e-16
Identity = 53/75 (70.67%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 1   MTYPEPEGYGQSLHVNGQATPAEVGLSSTSTNVNSFRCHNGDGIAEVLLALERIEQ-EEL 60
           MTYPEPE Y QS+H  G+ATP EV +SST TN+NSFRCHN  GIAEVLLALERIEQ EEL
Sbjct: 344 MTYPEPEDYSQSIHDIGRATPTEVDISSTLTNLNSFRCHN--GIAEVLLALERIEQEEEL 403

Query: 61  TYEACNLLLLFRFLS 75
           TYE   LL    FL+
Sbjct: 404 TYEQAILLETSMFLN 416

[Close]

BLAST of Cla97C05G098820 vs. NCBI nr
Match: XP_023524149.1 (uncharacterized protein LOC111788150 [Cucurbita pepo subsp. pepo] >XP_023524150.1 uncharacterized protein LOC111788150 [Cucurbita pepo subsp. pepo] >XP_023524151.1 uncharacterized protein LOC111788150 [Cucurbita pepo subsp. pepo] >XP_023524152.1 uncharacterized protein LOC111788150 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 92.8 bits (229), Expect = 5.3e-16
Identity = 52/75 (69.33%), Postives = 57/75 (76.00%), Query Frame = 0


Query: 1   MTYPEPEGYGQSLHVNGQATPAEVGLSSTSTNVNSFRCHNGDGIAEVLLALERIEQ-EEL 60
           MTYPEPE Y QS+H  G+ATP E  +SST TN+NSFRCHN  GIAEVLLALERIEQ EEL
Sbjct: 344 MTYPEPEDYSQSIHDIGRATPTEADISSTLTNLNSFRCHN--GIAEVLLALERIEQEEEL 403

Query: 61  TYEACNLLLLFRFLS 75
           TYE   LL    FL+
Sbjct: 404 TYEQAILLETSMFLN 416

[Close]

BLAST of Cla97C05G098820 vs. NCBI nr
Match: XP_004136311.1 (PREDICTED: uncharacterized protein LOC101218753 [Cucumis sativus] >XP_011652530.1 PREDICTED: uncharacterized protein LOC101218753 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 9.0e-16
Identity = 53/74 (71.62%), Postives = 56/74 (75.68%), Query Frame = 0


Query: 2   TYPEPEGYGQSLHVNGQATPAEVGLSSTSTNVNSFRCHNGDGIAEVLLALERIEQ-EELT 61
           T P+PEGY Q LH   QAT AEVGLSSTSTN + FRCHN DGIAEVLLALERIEQ EELT
Sbjct: 341 TSPKPEGYSQRLHDIRQATSAEVGLSSTSTNASRFRCHNVDGIAEVLLALERIEQEEELT 400

Query: 62  YEACNLLLLFRFLS 75
           YE   LL    FL+
Sbjct: 401 YEQTILLETSVFLN 414

[Close]

BLAST of Cla97C05G098820 vs. NCBI nr
Match: KGN60171.1 (hypothetical protein Csa_3G881840 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 49/62 (79.03%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 2   TYPEPEGYGQSLHVNGQATPAEVGLSSTSTNVNSFRCHNGDGIAEVLLALERIEQ-EELT 61
           T P+PEGY Q LH   QAT AEVGLSSTSTN + FRCHN DGIAEVLLALERIEQ EELT
Sbjct: 400 TSPKPEGYSQRLHDIRQATSAEVGLSSTSTNASRFRCHNVDGIAEVLLALERIEQEEELT 459

Query: 62  YE 63
           YE
Sbjct: 460 YE 461

[Close]

BLAST of Cla97C05G098820 vs. NCBI nr
Match: XP_022136854.1 (probable E3 ubiquitin-protein ligase RHG1A [Momordica charantia])

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 54/75 (72.00%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 1   MTYPEPEGYGQSLHVNGQATPAEVGLSSTSTNVNSFRCHNGDGIAEVLLALERIEQ-EEL 60
           MTYPE E Y QSL   GQ T AE G+SSTSTN+NSFRC N DGIAEVLLALERIEQ EEL
Sbjct: 341 MTYPEHEDYSQSLLDIGQTTAAEGGISSTSTNLNSFRCRNLDGIAEVLLALERIEQEEEL 400

Query: 61  TYEACNLLLLFRFLS 75
           TYE   LL    FLS
Sbjct: 401 TYEQAILLETSLFLS 415

[Close]

BLAST of Cla97C05G098820 vs. TrEMBL
Match: tr|A0A0A0LJG2|A0A0A0LJG2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881840 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 7.7e-16
Identity = 49/62 (79.03%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 2   TYPEPEGYGQSLHVNGQATPAEVGLSSTSTNVNSFRCHNGDGIAEVLLALERIEQ-EELT 61
           T P+PEGY Q LH   QAT AEVGLSSTSTN + FRCHN DGIAEVLLALERIEQ EELT
Sbjct: 400 TSPKPEGYSQRLHDIRQATSAEVGLSSTSTNASRFRCHNVDGIAEVLLALERIEQEEELT 459

Query: 62  YE 63
           YE
Sbjct: 460 YE 461

[Close]

BLAST of Cla97C05G098820 vs. TrEMBL
Match: tr|A0A1S4E5I3|A0A1S4E5I3_CUCME (uncharacterized protein LOC103503755 OS=Cucumis melo OX=3656 GN=LOC103503755 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.6e-11
Identity = 48/74 (64.86%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 2   TYPEPEGYGQSLHVNGQATPAEVGLSSTSTNVNSFRCHNGDGIAEVLLALERIEQ-EELT 61
           T  + EGY Q LH   QAT AEV LSSTSTN + FR HN D IAEVLLALERIEQ EELT
Sbjct: 341 TSTKSEGYSQRLHDIRQATSAEVDLSSTSTNASRFRGHNDDEIAEVLLALERIEQEEELT 400

Query: 62  YEACNLLLLFRFLS 75
           YE   LL    FL+
Sbjct: 401 YEQAILLETSVFLN 414

[Close]

BLAST of Cla97C05G098820 vs. TrEMBL
Match: tr|A0A0D2UD21|A0A0D2UD21_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G122800 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.0e-07
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 3   YPEPEGYGQSLHVNGQATPAEVGLSSTSTNVNSFRCHNGDGIAEVLLALERIEQ-EELTY 62
           Y +     + LH   Q++P+EVG++ T  N +SFR +N DGIAEVLLAL+RIEQ EELTY
Sbjct: 352 YSQAGSISEGLHSIMQSSPSEVGVNRTLVNQDSFRRYNMDGIAEVLLALQRIEQDEELTY 411

Query: 63  EACNL 67
           E  +L
Sbjct: 412 EVPSL 416

[Close]

BLAST of Cla97C05G098820 vs. TrEMBL
Match: tr|A0A2I4GP10|A0A2I4GP10_9ROSI (E3 ubiquitin-protein ligase MBR2-like isoform X1 OS=Juglans regia OX=51240 GN=LOC109009571 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.0e-07
Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 1   MTYPEPEGYGQSLHVNGQATPAEVGLSSTSTNVNSFRCHNGDGIAEVLLALERIEQ-EEL 60
           +++  P    +SLH    A+P EVG+S +  N NS R +N DGIAE+L+ALERIEQ EEL
Sbjct: 349 ISFSRPGSSSESLHGVLSASPTEVGISRSLMNQNSIRRYNIDGIAEILMALERIEQDEEL 408

Query: 61  TYE 63
           TYE
Sbjct: 409 TYE 411

[Close]

BLAST of Cla97C05G098820 vs. TrEMBL
Match: tr|A0A2I4GP13|A0A2I4GP13_9ROSI (E3 ubiquitin-protein ligase MBR2-like isoform X2 OS=Juglans regia OX=51240 GN=LOC109009571 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.0e-07
Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 1   MTYPEPEGYGQSLHVNGQATPAEVGLSSTSTNVNSFRCHNGDGIAEVLLALERIEQ-EEL 60
           +++  P    +SLH    A+P EVG+S +  N NS R +N DGIAE+L+ALERIEQ EEL
Sbjct: 349 ISFSRPGSSSESLHGVLSASPTEVGISRSLMNQNSIRRYNIDGIAEILMALERIEQDEEL 408

Query: 61  TYE 63
           TYE
Sbjct: 409 TYE 411

[Close]

BLAST of Cla97C05G098820 vs. TAIR10
Match: AT5G24870.1 (RING/U-box superfamily protein)

HSP 1 Score: 52.8 bits (125), Expect = 1.1e-07
Identity = 34/74 (45.95%), Postives = 47/74 (63.51%), Query Frame = 0


Query: 9   YGQSLHVNGQ-------ATPAEVGLSSTSTNVNSFRCHNGDGIAEVLLALERIEQ-EELT 68
           Y + +  NG+        +P+E GLS +  N ++FR +N +G+AEVLLALERIEQ EELT
Sbjct: 324 YSRPISSNGRLRSLMMPGSPSEAGLSRSLMNRDTFRRYNMNGVAEVLLALERIEQDEELT 383

Query: 69  YEACNLLLLFRFLS 75
           YE   +L    FL+
Sbjct: 384 YEQLAVLETNLFLN 397

[Close]

BLAST of Cla97C05G098820 vs. TAIR10
Match: AT5G10650.1 (RING/U-box superfamily protein)

HSP 1 Score: 46.2 bits (108), Expect = 1.0e-05
Identity = 27/51 (52.94%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 13  LHVNGQATPAEVGLSSTSTNVNSFRCHNGDGIAEVLLALERIE-QEELTYE 63
           +H N   +P E   SS+  N +    +N +GIAEVLLALERIE  EELTYE
Sbjct: 342 VHSNMPGSPTEADPSSSLVNRDGLSHYNMNGIAEVLLALERIEHDEELTYE 392

[Close]

BLAST of Cla97C05G098820 vs. TAIR10
Match: AT4G31450.1 (RING/U-box superfamily protein)

HSP 1 Score: 40.8 bits (94), Expect = 4.3e-04
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 23  EVGLSSTSTNVNSFRCHNGDGIAEVLLALERIEQE-ELTYE 63
           E GLS +  + +SFR +N DGI+E+L  L+RIEQ+ EL YE
Sbjct: 322 EFGLSGSLLSHDSFRSYNLDGISEILPELDRIEQDIELNYE 362

The following BLAST results are available for this feature:

BLAST of Cla97C05G098820 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022981972.1	1.8e-16	70.67	uncharacterized protein LOC111480963 [Cucurbita maxima] >XP_022981973.1 uncharac...	[more]
XP_023524149.1	5.3e-16	69.33	uncharacterized protein LOC111788150 [Cucurbita pepo subsp. pepo] >XP_023524150....	[more]
XP_004136311.1	9.0e-16	71.62	PREDICTED: uncharacterized protein LOC101218753 [Cucumis sativus] >XP_011652530....	[more]
KGN60171.1	1.2e-15	79.03	hypothetical protein Csa_3G881840 [Cucumis sativus]	[more]
XP_022136854.1	1.2e-15	72.00	probable E3 ubiquitin-protein ligase RHG1A [Momordica charantia]	[more]

BLAST of Cla97C05G098820 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LJG2\|A0A0A0LJG2_CUCSA	7.7e-16	79.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881840 PE=4 SV=1	[more]
tr\|A0A1S4E5I3\|A0A1S4E5I3_CUCME	2.6e-11	64.86	uncharacterized protein LOC103503755 OS=Cucumis melo OX=3656 GN=LOC103503755 PE=...	[more]
tr\|A0A0D2UD21\|A0A0D2UD21_GOSRA	3.0e-07	53.85	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G122800 PE=4 ...	[more]
tr\|A0A2I4GP10\|A0A2I4GP10_9ROSI	5.0e-07	53.97	E3 ubiquitin-protein ligase MBR2-like isoform X1 OS=Juglans regia OX=51240 GN=LO...	[more]
tr\|A0A2I4GP13\|A0A2I4GP13_9ROSI	5.0e-07	53.97	E3 ubiquitin-protein ligase MBR2-like isoform X2 OS=Juglans regia OX=51240 GN=LO...	[more]

BLAST of Cla97C05G098820 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C05G098820 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G24870.1	1.1e-07	45.95	RING/U-box superfamily protein	[more]
AT5G10650.1	1.0e-05	52.94	RING/U-box superfamily protein	[more]
AT4G31450.1	4.3e-04	53.66	RING/U-box superfamily protein	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0061630	ubiquitin protein ligase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G098820.1	Cla97C05G098820.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G098820	Cla020906	Watermelon (97103) v1	wmwmbB207
Cla97C05G098820	Csa3G881840	Cucumber (Chinese Long) v2	cuwmbB205
Cla97C05G098820	MELO3C003626	Melon (DHL92) v3.5.1	mewmbB338
Cla97C05G098820	ClCG05G017590	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G098820	Cucsa.311030	Cucumber (Gy14) v1	cgywmbB541
Cla97C05G098820	Lsi04G021950	Bottle gourd (USVL1VR-Ls)	lsiwmbB285
Cla97C05G098820	Bhi09G002011	Wax gourd	wgowmbB572

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G098820	Watermelon (97103) v2	wmbwmbB148
Cla97C05G098820	Silver-seed gourd	carwmbB0577
Cla97C05G098820	Silver-seed gourd	carwmbB0659
Cla97C05G098820	Cucumber (Gy14) v2	cgybwmbB197
Cla97C05G098820	Cucurbita maxima (Rimu)	cmawmbB027
Cla97C05G098820	Cucurbita maxima (Rimu)	cmawmbB475
Cla97C05G098820	Cucurbita moschata (Rifu)	cmowmbB015
Cla97C05G098820	Cucurbita moschata (Rifu)	cmowmbB457
Cla97C05G098820	Wild cucumber (PI 183967)	cpiwmbB210
Cla97C05G098820	Cucumber (Chinese Long) v3	cucwmbB207
Cla97C05G098820	Melon (DHL92) v3.6.1	medwmbB325
Cla97C05G098820	Wax gourd	wgowmbB304