Cla97C05G098700 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G098700
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Receptor-like kinase
Location	Cla97Chr05 : 27910997 .. 27911845 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACGGGATTCCCTCCACCAGATTACTATGGCGACCGCAAATCTGGAGCAACTGCGATTTGTGAGTATCTAATCCTTGTTGTTTGTGGAAAATATGAAAGAGTATCCTTGACACAGATTCGGCTTTTGTATATCTCACCACCTGGAAAACAAAAACATTGGTGTTGCAGATGTAGTTTTAAGCTTGGTGCTTTTTTCTGTGGTTACTGCAATCAGTTGCTGCTTTACTAAAAAACTGAGGCAAAACTGTCTAACACAGCTGGAAAATGCACTTGTTCCTCCATCTCCACCAAAGTTTGCATCTGCACCGAATTTAGCACATCAACCAATGCCCAATTTAATTCAAGTTTGGGAAATTGATGCACCAACAATGGAAAAATTCATTAAAAAACTGGCAAAAGAAAAGCCAGTAAGATTCACTGCTCAGCAACTATATATTTTCACAAGCAATTATTCAACACCACTTGGAGCTGGAGGATTCAGTACAGTTTACAAAGGTCAGTTCCCAAATGGGGTGAAGATGTGAGGATACTTCCTAACAAGAACACACAGCAAACTCAAGAACACTAAAATATGGAAACATATGAAAATATGAGGAAATATGCTATAATATCATAAGAACAAGTAACAAGGTAACCACTAGCCTTTTGAGAGGGCTAGACTCTCCCAAATTCCCAACTAAGGAAATCCCACAAAATTCTTCACACCTTTCTCTCCACCCCCTCTCCTTCTATTCATAGCAATATTTAGTAACTAACTTCCTATCTAATTACCCTTATACTCCTTACTACTAATCATACTAATATTCCCCTAATAATCCTATTATTTATCAAACTAGGGGCCTAA

mRNA sequence

ATGTCTACGGGATTCCCTCCACCAGATTACTATGGCGACCGCAAATCTGGAGCAACTGCGATTTATGTAGTTTTAAGCTTGGTGCTTTTTTCTGTGGTTACTGCAATCAGTTGCTGCTTTACTAAAAAACTGAGGCAAAACTGTCTAACACAGCTGGAAAATGCACTTGTTCCTCCATCTCCACCAAAGTTTGCATCTGCACCGAATTTAGCACATCAACCAATGCCCAATTTAATTCAAGTTTGGGAAATTGATGCACCAACAATGGAAAAATTCATTAAAAAACTGGCAAAAGAAAAGCCAGTAAGATTCACTGCTCAGCAACTATATATTTTCACAAGCAATTATTCAACACCACTTGGAGCTGGAGGATTCAGTACAGTTTACAAAGGGGCCTAA

Coding sequence (CDS)

ATGTCTACGGGATTCCCTCCACCAGATTACTATGGCGACCGCAAATCTGGAGCAACTGCGATTTATGTAGTTTTAAGCTTGGTGCTTTTTTCTGTGGTTACTGCAATCAGTTGCTGCTTTACTAAAAAACTGAGGCAAAACTGTCTAACACAGCTGGAAAATGCACTTGTTCCTCCATCTCCACCAAAGTTTGCATCTGCACCGAATTTAGCACATCAACCAATGCCCAATTTAATTCAAGTTTGGGAAATTGATGCACCAACAATGGAAAAATTCATTAAAAAACTGGCAAAAGAAAAGCCAGTAAGATTCACTGCTCAGCAACTATATATTTTCACAAGCAATTATTCAACACCACTTGGAGCTGGAGGATTCAGTACAGTTTACAAAGGGGCCTAA

Protein sequence

MSTGFPPPDYYGDRKSGATAIYVVLSLVLFSVVTAISCCFTKKLRQNCLTQLENALVPPSPPKFASAPNLAHQPMPNLIQVWEIDAPTMEKFIKKLAKEKPVRFTAQQLYIFTSNYSTPLGAGGFSTVYKGA

Homology

[Close]

BLAST of Cla97C05G098700 vs. NCBI nr
Match: XP_008466317.1 (PREDICTED: rust resistance kinase Lr10-like isoform X1 [Cucumis melo])

HSP 1 Score: 222.6 bits (566), Expect = 7.7e-55
Identity = 110/132 (83.33%), Postives = 120/132 (90.91%), Query Frame = 0


Query: 1   MSTGFPPPDYYGDRKSGATAIYVVLSLVLFSVVTAISCCFTKKLRQNCLTQLENALVPPS 60
           MS GF PP+YY DR+S   AIYVVL+LVLFSVV AI CCF+KK+RQNCLT+LENALVPPS
Sbjct: 1   MSRGFSPPNYYADRRSETRAIYVVLTLVLFSVVAAIGCCFSKKVRQNCLTELENALVPPS 60

Query: 61  PPKFASAPNLAHQPM-PNLIQVWEIDAPTMEKFIKKLAKEKPVRFTAQQLYIFTSNYSTP 120
           PPKFASAPNLAHQPM  N+IQVWEIDAPTME FI++LAKEKP+RFTAQQLYIFTSNYST 
Sbjct: 61  PPKFASAPNLAHQPMHNNVIQVWEIDAPTMENFIQELAKEKPIRFTAQQLYIFTSNYSTI 120

Query: 121 LGAGGFSTVYKG 132
           LGAGGFSTVYKG
Sbjct: 121 LGAGGFSTVYKG 132

[Close]

BLAST of Cla97C05G098700 vs. NCBI nr
Match: XP_011652524.1 (PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Cucumis sativus])

HSP 1 Score: 220.7 bits (561), Expect = 2.9e-54
Identity = 109/132 (82.58%), Postives = 120/132 (90.91%), Query Frame = 0


Query: 1   MSTGFPPPDYYGDRKSGATAIYVVLSLVLFSVVTAISCCFTKKLRQNCLTQLENALVPPS 60
           M+TGF PP+YY DR+S A AIYVVL LVLFSVV AI CCF+KK+RQNCLT+LENALVPPS
Sbjct: 1   MATGFSPPNYYADRRSEARAIYVVLILVLFSVVAAIGCCFSKKVRQNCLTELENALVPPS 60

Query: 61  PPKFASAPNLAHQPM-PNLIQVWEIDAPTMEKFIKKLAKEKPVRFTAQQLYIFTSNYSTP 120
           PP+FASAPNLAHQPM  N+IQVWEIDAPTMEKFI++LAKEKP+RFTAQQLYIFT NYST 
Sbjct: 61  PPRFASAPNLAHQPMHNNVIQVWEIDAPTMEKFIQELAKEKPIRFTAQQLYIFTRNYSTI 120

Query: 121 LGAGGFSTVYKG 132
           LGAG FSTVYKG
Sbjct: 121 LGAGAFSTVYKG 132

[Close]

BLAST of Cla97C05G098700 vs. NCBI nr
Match: KGN60161.1 (hypothetical protein Csa_3G881740 [Cucumis sativus])

HSP 1 Score: 209.5 bits (532), Expect = 6.8e-51
Identity = 108/141 (76.60%), Postives = 119/141 (84.40%), Query Frame = 0


Query: 1   MSTGFPPPDYYGDRKSGATAIY---------VVLSLVLFSVVTAISCCFTKKLRQNCLTQ 60
           M+TGF PP+YY DR+S A AI          VVL LVLFSVV AI CCF+KK+RQNCLT+
Sbjct: 1   MATGFSPPNYYADRRSEARAICEYLILVVCDVVLILVLFSVVAAIGCCFSKKVRQNCLTE 60

Query: 61  LENALVPPSPPKFASAPNLAHQPM-PNLIQVWEIDAPTMEKFIKKLAKEKPVRFTAQQLY 120
           LENALVPPSPP+FASAPNLAHQPM  N+IQVWEIDAPTMEKFI++LAKEKP+RFTAQQLY
Sbjct: 61  LENALVPPSPPRFASAPNLAHQPMHNNVIQVWEIDAPTMEKFIQELAKEKPIRFTAQQLY 120

Query: 121 IFTSNYSTPLGAGGFSTVYKG 132
           IFT NYST LGAG FSTVYKG
Sbjct: 121 IFTRNYSTILGAGAFSTVYKG 141

[Close]

BLAST of Cla97C05G098700 vs. NCBI nr
Match: XP_016903507.1 (PREDICTED: rust resistance kinase Lr10-like isoform X2 [Cucumis melo])

HSP 1 Score: 177.6 bits (449), Expect = 2.9e-41
Identity = 93/132 (70.45%), Postives = 100/132 (75.76%), Query Frame = 0


Query: 1   MSTGFPPPDYYGDRKSGATAIYVVLSLVLFSVVTAISCCFTKKLRQNCLTQLENALVPPS 60
           MS GF PP+YY DR+S   AI                      LRQNCLT+LENALVPPS
Sbjct: 1   MSRGFSPPNYYADRRSETRAI----------------------LRQNCLTELENALVPPS 60

Query: 61  PPKFASAPNLAHQPM-PNLIQVWEIDAPTMEKFIKKLAKEKPVRFTAQQLYIFTSNYSTP 120
           PPKFASAPNLAHQPM  N+IQVWEIDAPTME FI++LAKEKP+RFTAQQLYIFTSNYST 
Sbjct: 61  PPKFASAPNLAHQPMHNNVIQVWEIDAPTMENFIQELAKEKPIRFTAQQLYIFTSNYSTI 110

Query: 121 LGAGGFSTVYKG 132
           LGAGGFSTVYKG
Sbjct: 121 LGAGGFSTVYKG 110

[Close]

BLAST of Cla97C05G098700 vs. NCBI nr
Match: XP_022134934.1 (rust resistance kinase Lr10-like isoform X1 [Momordica charantia] >XP_022134941.1 rust resistance kinase Lr10-like isoform X1 [Momordica charantia])

HSP 1 Score: 155.6 bits (392), Expect = 1.2e-34
Identity = 74/131 (56.49%), Postives = 97/131 (74.05%), Query Frame = 0


Query: 1   MSTGFPPPDYYGDRKSGATAIYVVLSLVLFSVVTAISCCFTKKLRQNCLTQLENALVPPS 60
           MS+G   PD      + +T IYVVLSLV+FSV+ AISCCF +++RQ  + +L++ +  P 
Sbjct: 78  MSSGLSLPDNSSGSNTNSTVIYVVLSLVIFSVIGAISCCFARRVRQGIVRELQSVVTSP- 137

Query: 61  PPKFASAPNLAHQPMPNLIQVWEIDAPTMEKFIKKLAKEKPVRFTAQQLYIFTSNYSTPL 120
                 APN+AH P  N +Q+WEIDAPTMEKF++++A+E+PVRFTAQQLY FTSNYS PL
Sbjct: 138 ------APNVAHSPAQNTVQIWEIDAPTMEKFLREIAEERPVRFTAQQLYSFTSNYSAPL 197

Query: 121 GAGGFSTVYKG 132
           G+GGF  VYKG
Sbjct: 198 GSGGFGMVYKG 201

[Close]

BLAST of Cla97C05G098700 vs. TrEMBL
Match: tr|A0A1S3CSA0|A0A1S3CSA0_CUCME (rust resistance kinase Lr10-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503763 PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 5.1e-55
Identity = 110/132 (83.33%), Postives = 120/132 (90.91%), Query Frame = 0


Query: 1   MSTGFPPPDYYGDRKSGATAIYVVLSLVLFSVVTAISCCFTKKLRQNCLTQLENALVPPS 60
           MS GF PP+YY DR+S   AIYVVL+LVLFSVV AI CCF+KK+RQNCLT+LENALVPPS
Sbjct: 1   MSRGFSPPNYYADRRSETRAIYVVLTLVLFSVVAAIGCCFSKKVRQNCLTELENALVPPS 60

Query: 61  PPKFASAPNLAHQPM-PNLIQVWEIDAPTMEKFIKKLAKEKPVRFTAQQLYIFTSNYSTP 120
           PPKFASAPNLAHQPM  N+IQVWEIDAPTME FI++LAKEKP+RFTAQQLYIFTSNYST 
Sbjct: 61  PPKFASAPNLAHQPMHNNVIQVWEIDAPTMENFIQELAKEKPIRFTAQQLYIFTSNYSTI 120

Query: 121 LGAGGFSTVYKG 132
           LGAGGFSTVYKG
Sbjct: 121 LGAGGFSTVYKG 132

[Close]

BLAST of Cla97C05G098700 vs. TrEMBL
Match: tr|A0A0A0LJF6|A0A0A0LJF6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881740 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 4.5e-51
Identity = 108/141 (76.60%), Postives = 119/141 (84.40%), Query Frame = 0


Query: 1   MSTGFPPPDYYGDRKSGATAIY---------VVLSLVLFSVVTAISCCFTKKLRQNCLTQ 60
           M+TGF PP+YY DR+S A AI          VVL LVLFSVV AI CCF+KK+RQNCLT+
Sbjct: 1   MATGFSPPNYYADRRSEARAICEYLILVVCDVVLILVLFSVVAAIGCCFSKKVRQNCLTE 60

Query: 61  LENALVPPSPPKFASAPNLAHQPM-PNLIQVWEIDAPTMEKFIKKLAKEKPVRFTAQQLY 120
           LENALVPPSPP+FASAPNLAHQPM  N+IQVWEIDAPTMEKFI++LAKEKP+RFTAQQLY
Sbjct: 61  LENALVPPSPPRFASAPNLAHQPMHNNVIQVWEIDAPTMEKFIQELAKEKPIRFTAQQLY 120

Query: 121 IFTSNYSTPLGAGGFSTVYKG 132
           IFT NYST LGAG FSTVYKG
Sbjct: 121 IFTRNYSTILGAGAFSTVYKG 141

[Close]

BLAST of Cla97C05G098700 vs. TrEMBL
Match: tr|A0A1S4E5L2|A0A1S4E5L2_CUCME (rust resistance kinase Lr10-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503763 PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.9e-41
Identity = 93/132 (70.45%), Postives = 100/132 (75.76%), Query Frame = 0


Query: 1   MSTGFPPPDYYGDRKSGATAIYVVLSLVLFSVVTAISCCFTKKLRQNCLTQLENALVPPS 60
           MS GF PP+YY DR+S   AI                      LRQNCLT+LENALVPPS
Sbjct: 1   MSRGFSPPNYYADRRSETRAI----------------------LRQNCLTELENALVPPS 60

Query: 61  PPKFASAPNLAHQPM-PNLIQVWEIDAPTMEKFIKKLAKEKPVRFTAQQLYIFTSNYSTP 120
           PPKFASAPNLAHQPM  N+IQVWEIDAPTME FI++LAKEKP+RFTAQQLYIFTSNYST 
Sbjct: 61  PPKFASAPNLAHQPMHNNVIQVWEIDAPTMENFIQELAKEKPIRFTAQQLYIFTSNYSTI 110

Query: 121 LGAGGFSTVYKG 132
           LGAGGFSTVYKG
Sbjct: 121 LGAGGFSTVYKG 110

[Close]

BLAST of Cla97C05G098700 vs. TrEMBL
Match: tr|A0A1S3CR55|A0A1S3CR55_CUCME (rust resistance kinase Lr10-like OS=Cucumis melo OX=3656 GN=LOC103503762 PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 6.5e-34
Identity = 74/131 (56.49%), Postives = 99/131 (75.57%), Query Frame = 0


Query: 1   MSTGFPPPDYYGDRKSGATAIYVVLSLVLFSVVTAISCCFTKKLRQNCLTQLENALVPPS 60
           MS+ F PP   G+  +G TAIY++LS V+F+V+ AISCCF +K+RQ  + +L+N +    
Sbjct: 1   MSSVFSPPSDNGENNAG-TAIYILLSFVIFAVIGAISCCFARKVRQGIVRELQNVV---- 60

Query: 61  PPKFASAPNLAHQPMPNLIQVWEIDAPTMEKFIKKLAKEKPVRFTAQQLYIFTSNYSTPL 120
               ASAP  +   +PN++Q+WEID PTMEKFI+++AKE+PVRFT QQLY FTSNYSTPL
Sbjct: 61  ----ASAPPTSTHSVPNVVQIWEIDQPTMEKFIREMAKERPVRFTPQQLYCFTSNYSTPL 120

Query: 121 GAGGFSTVYKG 132
           G+GGF +VYKG
Sbjct: 121 GSGGFGSVYKG 122

[Close]

BLAST of Cla97C05G098700 vs. TrEMBL
Match: tr|A0A0A0LHF1|A0A0A0LHF1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881750 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.8e-31
Identity = 69/131 (52.67%), Postives = 96/131 (73.28%), Query Frame = 0


Query: 1   MSTGFPPPDYYGDRKSGATAIYVVLSLVLFSVVTAISCCFTKKLRQNCLTQLENALVPPS 60
           MS+GF P    G+  +GA  +Y++LS V+F+V+ AISCCF +K+RQ  + +L+  +    
Sbjct: 1   MSSGFSPTSDNGENNAGA-GLYILLSFVIFAVIGAISCCFARKVRQGIVRELQTVVA--- 60

Query: 61  PPKFASAPNLAHQPMPNLIQVWEIDAPTMEKFIKKLAKEKPVRFTAQQLYIFTSNYSTPL 120
               ++ PNL H   PN++Q+WEID PTMEKFI+++A+E+PVR T QQLY FTSNYSTPL
Sbjct: 61  ----SATPNLTHS--PNVVQIWEIDQPTMEKFIREMAEERPVRLTPQQLYCFTSNYSTPL 120

Query: 121 GAGGFSTVYKG 132
           G+GGF +VYKG
Sbjct: 121 GSGGFGSVYKG 121

The following BLAST results are available for this feature:

BLAST of Cla97C05G098700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466317.1	7.7e-55	83.33	PREDICTED: rust resistance kinase Lr10-like isoform X1 [Cucumis melo]	[more]
XP_011652524.1	2.9e-54	82.58	PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g343...	[more]
KGN60161.1	6.8e-51	76.60	hypothetical protein Csa_3G881740 [Cucumis sativus]	[more]
XP_016903507.1	2.9e-41	70.45	PREDICTED: rust resistance kinase Lr10-like isoform X2 [Cucumis melo]	[more]
XP_022134934.1	1.2e-34	56.49	rust resistance kinase Lr10-like isoform X1 [Momordica charantia] >XP_022134941....	[more]

BLAST of Cla97C05G098700 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CSA0\|A0A1S3CSA0_CUCME	5.1e-55	83.33	rust resistance kinase Lr10-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503...	[more]
tr\|A0A0A0LJF6\|A0A0A0LJF6_CUCSA	4.5e-51	76.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881740 PE=3 SV=1	[more]
tr\|A0A1S4E5L2\|A0A1S4E5L2_CUCME	1.9e-41	70.45	rust resistance kinase Lr10-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503...	[more]
tr\|A0A1S3CR55\|A0A1S3CR55_CUCME	6.5e-34	56.49	rust resistance kinase Lr10-like OS=Cucumis melo OX=3656 GN=LOC103503762 PE=3 SV...	[more]
tr\|A0A0A0LHF1\|A0A0A0LHF1_CUCSA	1.8e-31	52.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881750 PE=3 SV=1	[more]

BLAST of Cla97C05G098700 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C05G098700 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0004674	protein serine/threonine kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G098700.1	Cla97C05G098700.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR27009:SF54	SUBFAMILY NOT NAMED	coord: 16..131
None	No IPR available	PANTHER	PTHR27009	FAMILY NOT NAMED	coord: 16..131

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G098700	ClCG05G017510	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G098700	Bhi09G001997	Wax gourd	wgowmbB572

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G098700	Watermelon (97103) v2	wmbwmbB148
Cla97C05G098700	Silver-seed gourd	carwmbB0577
Cla97C05G098700	Silver-seed gourd	carwmbB0659
Cla97C05G098700	Cucumber (Gy14) v2	cgybwmbB134
Cla97C05G098700	Cucumber (Gy14) v2	cgybwmbB197
Cla97C05G098700	Cucumber (Gy14) v1	cgywmbB278
Cla97C05G098700	Cucumber (Gy14) v1	cgywmbB541
Cla97C05G098700	Cucurbita maxima (Rimu)	cmawmbB027
Cla97C05G098700	Cucurbita maxima (Rimu)	cmawmbB475
Cla97C05G098700	Cucurbita moschata (Rifu)	cmowmbB015
Cla97C05G098700	Cucurbita moschata (Rifu)	cmowmbB457
Cla97C05G098700	Wild cucumber (PI 183967)	cpiwmbB143
Cla97C05G098700	Wild cucumber (PI 183967)	cpiwmbB210
Cla97C05G098700	Cucumber (Chinese Long) v3	cucwmbB138
Cla97C05G098700	Cucumber (Chinese Long) v3	cucwmbB207
Cla97C05G098700	Cucumber (Chinese Long) v2	cuwmbB140
Cla97C05G098700	Cucumber (Chinese Long) v2	cuwmbB205
Cla97C05G098700	Bottle gourd (USVL1VR-Ls)	lsiwmbB285
Cla97C05G098700	Melon (DHL92) v3.6.1	medwmbB284
Cla97C05G098700	Melon (DHL92) v3.6.1	medwmbB325
Cla97C05G098700	Melon (DHL92) v3.5.1	mewmbB294
Cla97C05G098700	Melon (DHL92) v3.5.1	mewmbB338
Cla97C05G098700	Watermelon (Charleston Gray)	wcgwmbB331
Cla97C05G098700	Watermelon (97103) v1	wmwmbB207
Cla97C05G098700	Wax gourd	wgowmbB304