Cla97C05G098500 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G098500
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Polyamine-modulated factor 1-binding protein 1
Location	Cla97Chr05 : 27698069 .. 27699867 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACTTCCGAATCAAAACCCAATGATCAGCTTATTCCCTTGCCGGAATCGGAATCGCTGCCGGAATCTGAGTCGCAGCTCTCGGTTCTCATATACGGTACGTTTCTTTGCTTCCCTTTCTCTTTCTCTCTAATGCACACATTCAAAAGGCGCGCGAAAACGCTAACTACTATACGCTTTCTCGCAATGAAAATCTGCCTGCCTGACATTGTTTGGAGAGGTTATTAGTTAGATTTTGCCGCACCTATTGTGAAAGATCGGCATTGTTAATTGTCTTCTACTTATGTTTAAAGAAGCAAGAAATGCTATAAGATCAAACTCTAGCTAGCTGATGAAATTTCGTCTCGATTGCATTCTATAATGTTCGGCGTAGGTTCGACTGGAAACACCGATTAGGTTAACTTTCTTCACTTCTGATACTATAAATTCGTGTAGGACGAATCCGAAATAGATAGAGGTTGTTTGTTTTATACAAATTTTTGAACAAATCGGCAGTGTTAATTAGTTGCAGTTTCTTAAGACGAGAAGGAATTTGTATTCTTAAACTTAAGAGTCCGATTTCTCCAAATGGTGGCATTTTATTCTTAACACTACTTGAATCTGATTTGTGTTTACATGGCCAGTCAGTATTCACGTCTTATGATACTACCTCCATTTATATGTGTAATCCTTCTTTTATTTGATTGTCATGCTTCACTTATCCCTTATTTTTTAGTTGTGTAATTCTAGAAGGAATTTTATTAACTCTCTTGCTTCGAGTGGTTGTACTCCGAGAAAGGTTGCTCCTCTGCTTATTGATAGGTTTTTAAATTATACCAGATTAAATGTGCTCATGAGATTAGATCTGTTTTGGAGAGAGGTGGTAAATCACAGCCGAACACATGTGAAAACTTCAGAGCCTTGAAAGTTCAAACCAAGACGTGCTTGCTTCTATCACAAAATCATTTTCTCGTTTTCTCTTTCCTTCTTAGCTTGTTGGTGTTTATCCCTGAACTTTGGATCATTCTGCGTCATACAATTAGAGCACGCTGGTTCTGATACTTTTACATCCGCGCAGATATATCACAACAGGCTCAAGGGGCTATGGAGAACATGCTTAGAATGATCAGGTTTGTTAATTACGAACAGTAACTCGTTTTTTTTCTACTCTTTGGGATTTTTAGTTTGCGGGAAATGTTGGGGGAGAGTGAACTAATTACTACATGCGAACTTGATGCTTCTGGTTTATTCATTACTGATAAATGGATTGATATCATCCTTGAACTGACAACGAAATTTTTAAAATTTTTATAAAATAGATTTTAAAAGCATGAACTCTTCTAAATAATACATGGAGTTGAAGGAATGCAAATAGTATGATGACATGAAGTTTGCTTCGATGCTTAGATTTCTAGTTTATGCTTACAATAAATACTACAAAAAAAATTTGTGCTAGCGAATGATGACTATGAATATACTCTAGTGAAGCTATCTGTTCTTTGTCGCCCACCAATACCATCTATCTTCCATTCTTCATCTGCCTATCATTTTCTGAATCTTCTACTCCTAATGACTCAAATTAATGGCATAAAACGTAATGATGGTACGTCTACATCGTCATGCTAACCTTAGTCTTCTCGTTTTCAATTGTTTGCAGTGAAATTGATCAAAATGCTGTTGGAATAGTGGATGACATAGAAAAGTGCAGAGGTTCTGCTCTTGACAGGAAGGGAGTGCTAGAGGAAGAGAAACAACAATTTCAACAAGCTGCTTACACTGTTTTAGACATGCTCAACAATGGAGGGGGAACACTGTAA

mRNA sequence

ATGGCAACTTCCGAATCAAAACCCAATGATCAGCTTATTCCCTTGCCGGAATCGGAATCGCTGCCGGAATCTGAGTCGCAGCTCTCGGTTCTCATATACGATATATCACAACAGGCTCAAGGGGCTATGGAGAACATGCTTAGAATGATCAGTGAAATTGATCAAAATGCTGTTGGAATAGTGGATGACATAGAAAAGTGCAGAGGTTCTGCTCTTGACAGGAAGGGAGTGCTAGAGGAAGAGAAACAACAATTTCAACAAGCTGCTTACACTGTTTTAGACATGCTCAACAATGGAGGGGGAACACTGTAA

Coding sequence (CDS)

ATGGCAACTTCCGAATCAAAACCCAATGATCAGCTTATTCCCTTGCCGGAATCGGAATCGCTGCCGGAATCTGAGTCGCAGCTCTCGGTTCTCATATACGATATATCACAACAGGCTCAAGGGGCTATGGAGAACATGCTTAGAATGATCAGTGAAATTGATCAAAATGCTGTTGGAATAGTGGATGACATAGAAAAGTGCAGAGGTTCTGCTCTTGACAGGAAGGGAGTGCTAGAGGAAGAGAAACAACAATTTCAACAAGCTGCTTACACTGTTTTAGACATGCTCAACAATGGAGGGGGAACACTGTAA

Protein sequence

MATSESKPNDQLIPLPESESLPESESQLSVLIYDISQQAQGAMENMLRMISEIDQNAVGIVDDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGGTL

Homology

[Close]

BLAST of Cla97C05G098500 vs. NCBI nr
Match: XP_004136463.1 (PREDICTED: uncharacterized protein LOC101215419 [Cucumis sativus])

HSP 1 Score: 188.0 bits (476), Expect = 1.6e-44
Identity = 98/101 (97.03%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MATSESKPNDQLIPLPESESLPESESQLSVLIYDISQQAQGAMENMLRMISEIDQNAVGI 60
           MATSESKPNDQLIPLPESESLPESESQLS LI+DISQQAQGAMENMLRMISEIDQNAVGI
Sbjct: 1   MATSESKPNDQLIPLPESESLPESESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60

Query: 61  VDDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGG 102
           V+DIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGG
Sbjct: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGG 101

[Close]

BLAST of Cla97C05G098500 vs. NCBI nr
Match: KGN60141.1 (hypothetical protein Csa_3G881050 [Cucumis sativus])

HSP 1 Score: 188.0 bits (476), Expect = 1.6e-44
Identity = 98/101 (97.03%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MATSESKPNDQLIPLPESESLPESESQLSVLIYDISQQAQGAMENMLRMISEIDQNAVGI 60
           MATSESKPNDQLIPLPESESLPESESQLS LI+DISQQAQGAMENMLRMISEIDQNAVGI
Sbjct: 1   MATSESKPNDQLIPLPESESLPESESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60

Query: 61  VDDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGG 102
           V+DIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGG
Sbjct: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGG 101

[Close]

BLAST of Cla97C05G098500 vs. NCBI nr
Match: XP_008466349.1 (PREDICTED: uncharacterized protein LOC103503784 [Cucumis melo])

HSP 1 Score: 183.0 bits (463), Expect = 5.3e-43
Identity = 98/104 (94.23%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 1   MATSESKPNDQLIPLPESESLPESESQLSVLIYDISQQAQGAMENMLRMISEIDQNAVGI 60
           MATSESKPNDQLIPLPE ESLPE ESQLS LI+DISQQAQGAMENMLRMISEIDQNAVGI
Sbjct: 1   MATSESKPNDQLIPLPEPESLPEPESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60

Query: 61  VDDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNN-GGGTL 104
           V+DIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNN GGGTL
Sbjct: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRGGGTL 104

[Close]

BLAST of Cla97C05G098500 vs. NCBI nr
Match: XP_022937053.1 (uncharacterized protein LOC111443468 [Cucurbita moschata])

HSP 1 Score: 181.8 bits (460), Expect = 1.2e-42
Identity = 97/105 (92.38%), Postives = 102/105 (97.14%), Query Frame = 0


Query: 1   MATSESKPNDQLIPLPESESLPE--SESQLSVLIYDISQQAQGAMENMLRMISEIDQNAV 60
           MA+SESKPNDQLIPLPESESLPE  SESQLSVL++ ISQQAQGAMENMLRMISEIDQNAV
Sbjct: 1   MASSESKPNDQLIPLPESESLPESXSESQLSVLLFHISQQAQGAMENMLRMISEIDQNAV 60

Query: 61  GIVDDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGGTL 104
           GI++DIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGGTL
Sbjct: 61  GILEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGGTL 105

[Close]

BLAST of Cla97C05G098500 vs. NCBI nr
Match: XP_023535872.1 (uncharacterized protein LOC111797169 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 179.9 bits (455), Expect = 4.5e-42
Identity = 96/105 (91.43%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 1   MATSESKPNDQLIPLPESESLP--ESESQLSVLIYDISQQAQGAMENMLRMISEIDQNAV 60
           MA+SESKPND LIPLPESESLP  ESESQLSVL++ ISQQAQGAMENMLRMISEIDQNAV
Sbjct: 1   MASSESKPNDHLIPLPESESLPEAESESQLSVLLFHISQQAQGAMENMLRMISEIDQNAV 60

Query: 61  GIVDDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGGTL 104
           GI++DIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGGTL
Sbjct: 61  GILEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGGTL 105

[Close]

BLAST of Cla97C05G098500 vs. TrEMBL
Match: tr|A0A0A0LJE0|A0A0A0LJE0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881050 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.1e-44
Identity = 98/101 (97.03%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MATSESKPNDQLIPLPESESLPESESQLSVLIYDISQQAQGAMENMLRMISEIDQNAVGI 60
           MATSESKPNDQLIPLPESESLPESESQLS LI+DISQQAQGAMENMLRMISEIDQNAVGI
Sbjct: 1   MATSESKPNDQLIPLPESESLPESESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60

Query: 61  VDDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGG 102
           V+DIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGG
Sbjct: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGG 101

[Close]

BLAST of Cla97C05G098500 vs. TrEMBL
Match: tr|A0A1S3CR82|A0A1S3CR82_CUCME (uncharacterized protein LOC103503784 OS=Cucumis melo OX=3656 GN=LOC103503784 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.5e-43
Identity = 98/104 (94.23%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 1   MATSESKPNDQLIPLPESESLPESESQLSVLIYDISQQAQGAMENMLRMISEIDQNAVGI 60
           MATSESKPNDQLIPLPE ESLPE ESQLS LI+DISQQAQGAMENMLRMISEIDQNAVGI
Sbjct: 1   MATSESKPNDQLIPLPEPESLPEPESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60

Query: 61  VDDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNN-GGGTL 104
           V+DIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNN GGGTL
Sbjct: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRGGGTL 104

[Close]

BLAST of Cla97C05G098500 vs. TrEMBL
Match: tr|A0A2P4IJT1|A0A2P4IJT1_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_53912 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.4e-23
Identity = 62/98 (63.27%), Postives = 79/98 (80.61%), Query Frame = 0


Query: 1  MATSESKPNDQLIPLPESESLPESESQLSVLIYDISQQAQGAMENMLRMISEIDQNAVGI 60
          MA S S  + QL+P       PE ESQLS L+YD+SQQ QGAMENML+MI+E+DQN+ GI
Sbjct: 1  MAASPSHSDVQLLP------APEPESQLSSLVYDLSQQLQGAMENMLKMINEVDQNSAGI 60

Query: 61 VDDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNN 99
          +++IEKC+ SAL+RK +LEEEKQ+FQ+AAYTVL ML+N
Sbjct: 61 MEEIEKCKDSALERKRILEEEKQRFQKAAYTVLGMLDN 92

[Close]

BLAST of Cla97C05G098500 vs. TrEMBL
Match: tr|A0A2P5G173|A0A2P5G173_9ROSA (Polyamine-modulated factor 1-binding protein OS=Trema orientalis OX=63057 GN=TorRG33x02_000730 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.8e-23
Identity = 62/99 (62.63%), Postives = 80/99 (80.81%), Query Frame = 0


Query: 1   MATSESKPNDQLIPLPESESLPESESQLSVLIYDISQQAQGAMENMLRMISEIDQNAVGI 60
           MA S S+ + Q +  P     PE ESQLS L+Y++SQQ Q AMENML+MI+EID+N+ GI
Sbjct: 1   MAASPSQSDAQKLLAP-----PEPESQLSSLVYEMSQQVQAAMENMLKMINEIDENSAGI 60

Query: 61  VDDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNG 100
           ++DIEKC+ SA+DRK VLEEEK++FQ+AA+TVLDMLNNG
Sbjct: 61  MEDIEKCKESAIDRKRVLEEEKERFQKAAFTVLDMLNNG 94

[Close]

BLAST of Cla97C05G098500 vs. TrEMBL
Match: tr|A0A2N9ERF3|A0A2N9ERF3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS5280 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.2e-22
Identity = 60/97 (61.86%), Postives = 78/97 (80.41%), Query Frame = 0


Query: 2  ATSESKPNDQLIPLPESESLPESESQLSVLIYDISQQAQGAMENMLRMISEIDQNAVGIV 61
          + S S  + QL+P       PE ESQLS L+YDISQQ QGAMENML+MI+E+DQN+ GIV
Sbjct: 4  SASPSHSDVQLLP------APEPESQLSSLVYDISQQIQGAMENMLKMINEVDQNSAGIV 63

Query: 62 DDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNN 99
          ++IEKC+ SAL++K +LEEEK++FQ+AAYTVL +LNN
Sbjct: 64 EEIEKCKDSALEKKRILEEEKERFQKAAYTVLHLLNN 94

[Close]

BLAST of Cla97C05G098500 vs. TAIR10
Match: AT5G25570.3 (unknown protein)

HSP 1 Score: 87.4 bits (215), Expect = 5.5e-18
Identity = 42/70 (60.00%), Postives = 57/70 (81.43%), Query Frame = 0


Query: 32  IYDISQQAQGAMENMLRMISEIDQNAVGIVDDIEKCRGSALDRKGVLEEEKQQFQQAAYT 91
           I ++SQQ Q  MENML+M+ EIDQN+VGI ++IEK +  A+++K +LEEEK QFQ+AAYT
Sbjct: 62  IAEMSQQVQMGMENMLKMVYEIDQNSVGIKEEIEKSKDFAMEKKRILEEEKDQFQKAAYT 121

Query: 92  VLDMLNNGGG 102
           +LDML+N  G
Sbjct: 122 ILDMLSNSRG 131

The following BLAST results are available for this feature:

BLAST of Cla97C05G098500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136463.1	1.6e-44	97.03	PREDICTED: uncharacterized protein LOC101215419 [Cucumis sativus]	[more]
KGN60141.1	1.6e-44	97.03	hypothetical protein Csa_3G881050 [Cucumis sativus]	[more]
XP_008466349.1	5.3e-43	94.23	PREDICTED: uncharacterized protein LOC103503784 [Cucumis melo]	[more]
XP_022937053.1	1.2e-42	92.38	uncharacterized protein LOC111443468 [Cucurbita moschata]	[more]
XP_023535872.1	4.5e-42	91.43	uncharacterized protein LOC111797169 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cla97C05G098500 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LJE0\|A0A0A0LJE0_CUCSA	1.1e-44	97.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881050 PE=4 SV=1	[more]
tr\|A0A1S3CR82\|A0A1S3CR82_CUCME	3.5e-43	94.23	uncharacterized protein LOC103503784 OS=Cucumis melo OX=3656 GN=LOC103503784 PE=...	[more]
tr\|A0A2P4IJT1\|A0A2P4IJT1_QUESU	1.4e-23	63.27	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_53912 PE=4 SV=1	[more]
tr\|A0A2P5G173\|A0A2P5G173_9ROSA	1.8e-23	62.63	Polyamine-modulated factor 1-binding protein OS=Trema orientalis OX=63057 GN=Tor...	[more]
tr\|A0A2N9ERF3\|A0A2N9ERF3_FAGSY	1.2e-22	61.86	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS5280 PE=4 SV=1	[more]

BLAST of Cla97C05G098500 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C05G098500 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G25570.3	5.5e-18	60.00	unknown protein	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G098500.1	Cla97C05G098500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR36800	FAMILY NOT NAMED	coord: 2..99

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G098500	Csa3G881050	Cucumber (Chinese Long) v2	cuwmbB205
Cla97C05G098500	MELO3C003657	Melon (DHL92) v3.5.1	mewmbB338
Cla97C05G098500	ClCG05G017300	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G098500	CSPI03G44380	Wild cucumber (PI 183967)	cpiwmbB210
Cla97C05G098500	Cucsa.310740	Cucumber (Gy14) v1	cgywmbB541
Cla97C05G098500	CmaCh09G004930	Cucurbita maxima (Rimu)	cmawmbB027
Cla97C05G098500	CmoCh09G004940	Cucurbita moschata (Rifu)	cmowmbB015
Cla97C05G098500	Lsi04G021690	Bottle gourd (USVL1VR-Ls)	lsiwmbB285
Cla97C05G098500	MELO3C003657.2	Melon (DHL92) v3.6.1	medwmbB325
Cla97C05G098500	Carg21150	Silver-seed gourd	carwmbB0577
Cla97C05G098500	Carg02912	Silver-seed gourd	carwmbB0659
Cla97C05G098500	CsaV3_3G046810	Cucumber (Chinese Long) v3	cucwmbB207
Cla97C05G098500	Bhi09G001970	Wax gourd	wgowmbB572

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G098500	Watermelon (97103) v2	wmbwmbB148
Cla97C05G098500	Silver-seed gourd	carwmbB1031
Cla97C05G098500	Cucumber (Gy14) v2	cgybwmbB134
Cla97C05G098500	Cucumber (Gy14) v2	cgybwmbB197
Cla97C05G098500	Cucumber (Gy14) v1	cgywmbB278
Cla97C05G098500	Cucurbita maxima (Rimu)	cmawmbB185
Cla97C05G098500	Cucurbita maxima (Rimu)	cmawmbB475
Cla97C05G098500	Cucurbita moschata (Rifu)	cmowmbB170
Cla97C05G098500	Cucurbita moschata (Rifu)	cmowmbB457
Cla97C05G098500	Wild cucumber (PI 183967)	cpiwmbB143
Cla97C05G098500	Cucumber (Chinese Long) v3	cucwmbB138
Cla97C05G098500	Cucumber (Chinese Long) v2	cuwmbB140
Cla97C05G098500	Melon (DHL92) v3.6.1	medwmbB284
Cla97C05G098500	Melon (DHL92) v3.6.1	medwmbB324
Cla97C05G098500	Melon (DHL92) v3.5.1	mewmbB294
Cla97C05G098500	Melon (DHL92) v3.5.1	mewmbB337
Cla97C05G098500	Watermelon (Charleston Gray)	wcgwmbB331
Cla97C05G098500	Watermelon (97103) v1	wmwmbB094
Cla97C05G098500	Watermelon (97103) v1	wmwmbB207
Cla97C05G098500	Wax gourd	wgowmbB304