Cla97C05G098250 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G098250
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Unknown protein
Location	Cla97Chr05 : 27506868 .. 27508148 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATTTTGAAGGATGAAGATGGACAGCGTCTCCAGTTGAAGTCACCATTGGAAAGAAAATAGAACTCAATCCAACTTTGGAGAAAAACTTTGGGTTTTGAGTTGCAAATTTTAGTGTCAAATTTGGGTTATTTGTGTTTAAAATAAACATTTTGTACTTGTAGCCTGTCTCTTCGTTGCTTTCCATCAAAGTGCTTTGTTGTTTAGTTGAAAATGGTTGGAATGAGGATACAACCCTTAATTCGATAATAATGACGATTTAACAAACTATCATGAGTTAGTCTAATAGTAAAAAATGAGACATAATCTCAATAAACTATCATGAGTTTGATTCTGCTTGGTCTTTGATTATTCGTCTTCTCCGTGGAGATGAAGAGTTCTCTTTGGTTTCAGTCGACGTGTTTGTGATATTGATCAAGGTACGCTCGTGCAAGTATATTTTTAACGAGCCTGCAATGTGAATATTACTTCTTTATGGATTTGATTGCTTTTCCATTTATGTTAACCGTCCTAGGATATGAAAATTCATATTCGAAAATCACATTCCTTCGCCATTGCAATTTAAGGGTTATATTCATCTTGATATTGTCATTCTCTGCCGTTGAGTGCACTTGATCGGGACTTAAAACTGAATAGAGAAATTCTTTAACTCATTTTCTTGTTAGAGATAATGGTTTGATTTATATCTTTGTTTTTGTCTTACGTGATGATAATTTCATCAGGCATGCTTCAACATGCAATTCGAACCTTTGAATTTGCTTGCAACCTAGAAACAATTTCAGGGACCAACTCAGAGGGTTTGTTTAAGATTTTACTTGATTCACTCTGCAAATAAGGGCACATCAGGGTAGCTTCTGAGTATTTCAATAAGAAAATGAATATGGATTCGAGTTTTGAACAATCAATTTGAGCATATAATATACTTCTAAATGAATGGTTTCGATAAAGAAAGCTCAAACATGCTGAGAGACTCTGGTTTGAGATGAAGAAGAACAAAATATCTCCCACTATTGTTACATATGGCACCCTTGTAGAAGGCTATTGTCGAATGTGTCGTGTTGAAAGCCATTGAATTGGTAGATGAGATTAGGGGAGAATGTATTAAGCCAAATGCAATCATATATAACCCAATAGTTGATGCAGGGGAAGTCGGGAGGCATTGGGAATGATGGAGCGGTTCACGGTTTTGGAGCAAGGCCCTACTATCTCAACGTACAATTCTCTTATCAAGGGGTATTGCAATGCATGAGATCTTTTTGGGGCAAGCAAGATCCTTAA

mRNA sequence

ATGAAGATTTTGAAGGATGAAGATGGACAGCGTCTCCAGTTGAACCTGTCTCTTCGTTGCTTTCCATCAAAGTGCTTTTTTGATTCTGCTTGGTCTTTGATTATTCGTCTTCTCCGTGGAGATGAAGAGTTCTCTTTGGTTTCAGTCGACGTGTTTGTGATATTGATCAAGGGGAAGTCGGGAGGCATTGGGAATGATGGAGCGGTTCACGGTTTTGGAGCAAGGCCCTACTATCTCAACGTACAATTCTCTTATCAAGGGGTATTGCAATGCATGAGATCTTTTTGGGGCAAGCAAGATCCTTAA

Coding sequence (CDS)

ATGAAGATTTTGAAGGATGAAGATGGACAGCGTCTCCAGTTGAACCTGTCTCTTCGTTGCTTTCCATCAAAGTGCTTTTTTGATTCTGCTTGGTCTTTGATTATTCGTCTTCTCCGTGGAGATGAAGAGTTCTCTTTGGTTTCAGTCGACGTGTTTGTGATATTGATCAAGGGGAAGTCGGGAGGCATTGGGAATGATGGAGCGGTTCACGGTTTTGGAGCAAGGCCCTACTATCTCAACGTACAATTCTCTTATCAAGGGGTATTGCAATGCATGAGATCTTTTTGGGGCAAGCAAGATCCTTAA

Protein sequence

MKILKDEDGQRLQLNLSLRCFPSKCFFDSAWSLIIRLLRGDEEFSLVSVDVFVILIKGKSGGIGNDGAVHGFGARPYYLNVQFSYQGVLQCMRSFWGKQDP

Homology

[Close]

BLAST of Cla97C05G098250 vs. NCBI nr
Match: XP_022131254.1 (pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Momordica charantia] >XP_022131263.1 pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Momordica charantia])

HSP 1 Score: 56.6 bits (135), Expect = 5.6e-05
Identity = 28/31 (90.32%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 27  FDSAWSLIIRLLRGDEEFSLVSVDVFVILIK 58
           FDSAWSLIIR LRGDEE SLVSVDVFVILI+
Sbjct: 164 FDSAWSLIIRCLRGDEESSLVSVDVFVILIR 194

[Close]

BLAST of Cla97C05G098250 vs. NCBI nr
Match: XP_022940385.1 (pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Cucurbita moschata])

HSP 1 Score: 53.9 bits (128), Expect = 3.6e-04
Identity = 28/43 (65.12%), Postives = 31/43 (72.09%), Query Frame = 0


Query: 15  NLSLRCFPSKCFFDSAWSLIIRLLRGDEEFSLVSVDVFVILIK 58
           N ++        FDSAWSLIIR LRGD E SLVSVDVFVILI+
Sbjct: 158 NCTINVLAKSRAFDSAWSLIIRRLRGDGESSLVSVDVFVILIR 200

[Close]

BLAST of Cla97C05G098250 vs. NCBI nr
Match: XP_022981318.1 (pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Cucurbita maxima])

HSP 1 Score: 53.5 bits (127), Expect = 4.8e-04
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 27  FDSAWSLIIRLLRGDEEFSLVSVDVFVILIK 58
           FDSAWSLIIR LRGD E SLVSVDVFVILI+
Sbjct: 170 FDSAWSLIIRRLRGDGESSLVSVDVFVILIR 200

[Close]

BLAST of Cla97C05G098250 vs. NCBI nr
Match: XP_023524120.1 (pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023524121.1 pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 53.5 bits (127), Expect = 4.8e-04
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 27  FDSAWSLIIRLLRGDEEFSLVSVDVFVILIK 58
           FDSAWSLIIR LRGD E SLVSVDVFVILI+
Sbjct: 170 FDSAWSLIIRRLRGDGESSLVSVDVFVILIR 200

The following BLAST results are available for this feature:

BLAST of Cla97C05G098250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131254.1	5.6e-05	90.32	pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Momordica ...	[more]
XP_022940385.1	3.6e-04	65.12	pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Cucurbita ...	[more]
XP_022981318.1	4.8e-04	87.10	pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Cucurbita ...	[more]
XP_023524120.1	4.8e-04	87.10	pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Cucurbita ...	[more]

BLAST of Cla97C05G098250 vs. TrEMBL


Match Name	E-value	Identity	Description

BLAST of Cla97C05G098250 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C05G098250 vs. TAIR10


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G098250.1	Cla97C05G098250.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G098250	Silver-seed gourd	carwmbB0148
Cla97C05G098250	Silver-seed gourd	carwmbB0659
Cla97C05G098250	Silver-seed gourd	carwmbB0696
Cla97C05G098250	Silver-seed gourd	carwmbB0699
Cla97C05G098250	Silver-seed gourd	carwmbB1031
Cla97C05G098250	Cucumber (Gy14) v2	cgybwmbB197
Cla97C05G098250	Cucumber (Gy14) v1	cgywmbB278
Cla97C05G098250	Cucumber (Gy14) v1	cgywmbB541
Cla97C05G098250	Cucurbita maxima (Rimu)	cmawmbB027
Cla97C05G098250	Cucurbita maxima (Rimu)	cmawmbB185
Cla97C05G098250	Cucurbita maxima (Rimu)	cmawmbB475
Cla97C05G098250	Cucurbita maxima (Rimu)	cmawmbB482
Cla97C05G098250	Cucurbita maxima (Rimu)	cmawmbB818
Cla97C05G098250	Cucurbita moschata (Rifu)	cmowmbB015
Cla97C05G098250	Cucurbita moschata (Rifu)	cmowmbB170
Cla97C05G098250	Cucurbita moschata (Rifu)	cmowmbB457
Cla97C05G098250	Cucurbita moschata (Rifu)	cmowmbB463
Cla97C05G098250	Wild cucumber (PI 183967)	cpiwmbB210
Cla97C05G098250	Cucumber (Chinese Long) v3	cucwmbB138
Cla97C05G098250	Cucumber (Chinese Long) v3	cucwmbB207
Cla97C05G098250	Cucumber (Chinese Long) v2	cuwmbB205
Cla97C05G098250	Bottle gourd (USVL1VR-Ls)	lsiwmbB285
Cla97C05G098250	Melon (DHL92) v3.6.1	medwmbB324
Cla97C05G098250	Melon (DHL92) v3.6.1	medwmbB325
Cla97C05G098250	Melon (DHL92) v3.5.1	mewmbB294
Cla97C05G098250	Melon (DHL92) v3.5.1	mewmbB337
Cla97C05G098250	Melon (DHL92) v3.5.1	mewmbB338
Cla97C05G098250	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G098250	Watermelon (Charleston Gray)	wcgwmbB331
Cla97C05G098250	Watermelon (97103) v1	wmwmbB094
Cla97C05G098250	Watermelon (97103) v1	wmwmbB207
Cla97C05G098250	Wax gourd	wgowmbB572