Cla97C05G097930 (gene) Watermelon (97103) v2

Overview
NameCla97C05G097930
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr05 : 27274757 .. 27275009 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGATTGCGATCGAGCTGTACAATATGCTTCCCCTGCAAATGCCAGCTTTTCATGTCAGTAACATCCTTTTTGGGGTCTACTAGGGTTCATCCATGCAGGCTTCGACATTGACACGACCGATTCAATCGATTCGGTGCCTCCAATGGCCGCTCGCTGCCGAAAAGATCAGTTTCATTGCCCTAATTTTCGAGGTCACGTGGACTTCAATTGAACTTGCCCGCTCGGTTCTAGACAAGCTCTTGCCCTGA

mRNA sequence

ATGGCTGATTGCGATCGAGCTGCTTCGACATTGACACGACCGATTCAATCGATTCGGTGCCTCCAATGGCCGCTCGCTGCCGAAAAGATCAGTTTCATTGCCCTAATTTTCGAGGTCACGTGGACTTCAATTGAACTTGCCCGCTCGGTTCTAGACAAGCTCTTGCCCTGA

Coding sequence (CDS)

ATGGCTGATTGCGATCGAGCTGCTTCGACATTGACACGACCGATTCAATCGATTCGGTGCCTCCAATGGCCGCTCGCTGCCGAAAAGATCAGTTTCATTGCCCTAATTTTCGAGGTCACGTGGACTTCAATTGAACTTGCCCGCTCGGTTCTAGACAAGCTCTTGCCCTGA

Protein sequence

MADCDRAASTLTRPIQSIRCLQWPLAAEKISFIALIFEVTWTSIELARSVLDKLLP
Homology
[Close]
BLAST of Cla97C05G097930 vs. NCBI nr
Match: XP_022940237.1 (auxin-responsive protein IAA29-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 75.1 bits (183), Expect = 8.5e-11
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = 0 

Query: 8  ASTLTRPIQSIRCLQWPLAAEKISFIALIFEVTWTSIELARSVLDKLLP 57
          AST TRPIQS+RCLQWPL AE  SF+A++ +VTWTSI LAR VLD  LP
Sbjct: 3  ASTSTRPIQSLRCLQWPLVAEDTSFVAMVLKVTWTSIGLARLVLDNFLP 51

[Close]
BLAST of Cla97C05G097930 vs. NCBI nr
Match: XP_022982033.1 (auxin-responsive protein IAA29-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-10
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = 0 

Query: 8  ASTLTRPIQSIRCLQWPLAAEKISFIALIFEVTWTSIELARSVLDKLLP 57
          AST TRPIQS+RCLQWPL AE  SF+A++ +VTWTSI LAR VLD  LP
Sbjct: 3  ASTSTRPIQSLRCLQWPLVAEDTSFLAMVLKVTWTSIGLARLVLDNFLP 51

[Close]
BLAST of Cla97C05G097930 vs. NCBI nr
Match: XP_023524314.1 (auxin-responsive protein IAA29-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-10
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = 0 

Query: 8  ASTLTRPIQSIRCLQWPLAAEKISFIALIFEVTWTSIELARSVLDKLLP 57
          AST TRPIQS+RCLQWPL AE  SF+A++ +VTWTSI LAR VLD  LP
Sbjct: 3  ASTSTRPIQSLRCLQWPLVAEDTSFLAMVLKVTWTSIGLARLVLDNFLP 51

The following BLAST results are available for this feature:
BLAST of Cla97C05G097930 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022940237.18.5e-1171.43auxin-responsive protein IAA29-like isoform X2 [Cucurbita moschata][more]
XP_022982033.11.1e-1071.43auxin-responsive protein IAA29-like isoform X3 [Cucurbita maxima][more]
XP_023524314.11.1e-1071.43auxin-responsive protein IAA29-like isoform X2 [Cucurbita pepo subsp. pepo][more]
BLAST of Cla97C05G097930 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Cla97C05G097930 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C05G097930 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G097930.1Cla97C05G097930.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C05G097930MELO3C003702Melon (DHL92) v3.5.1mewmbB338
Cla97C05G097930Carg00457Silver-seed gourdcarwmbB0699
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C05G097930Watermelon (97103) v2wmbwmbB070
Cla97C05G097930Watermelon (97103) v2wmbwmbB154
Cla97C05G097930Watermelon (97103) v2wmbwmbB138
Cla97C05G097930Silver-seed gourdcarwmbB0033
Cla97C05G097930Silver-seed gourdcarwmbB0132
Cla97C05G097930Silver-seed gourdcarwmbB0260
Cla97C05G097930Silver-seed gourdcarwmbB0594
Cla97C05G097930Silver-seed gourdcarwmbB0659
Cla97C05G097930Cucumber (Gy14) v2cgybwmbB060
Cla97C05G097930Cucumber (Gy14) v2cgybwmbB130
Cla97C05G097930Cucumber (Gy14) v2cgybwmbB197
Cla97C05G097930Cucumber (Gy14) v2cgybwmbB512
Cla97C05G097930Cucumber (Gy14) v1cgywmbB138
Cla97C05G097930Cucumber (Gy14) v1cgywmbB215
Cla97C05G097930Cucumber (Gy14) v1cgywmbB541
Cla97C05G097930Cucurbita maxima (Rimu)cmawmbB027
Cla97C05G097930Cucurbita maxima (Rimu)cmawmbB072
Cla97C05G097930Cucurbita maxima (Rimu)cmawmbB124
Cla97C05G097930Cucurbita maxima (Rimu)cmawmbB184
Cla97C05G097930Cucurbita maxima (Rimu)cmawmbB482
Cla97C05G097930Cucurbita maxima (Rimu)cmawmbB816
Cla97C05G097930Cucurbita moschata (Rifu)cmowmbB015
Cla97C05G097930Cucurbita moschata (Rifu)cmowmbB061
Cla97C05G097930Cucurbita moschata (Rifu)cmowmbB109
Cla97C05G097930Cucurbita moschata (Rifu)cmowmbB168
Cla97C05G097930Cucurbita moschata (Rifu)cmowmbB463
Cla97C05G097930Cucurbita moschata (Rifu)cmowmbB791
Cla97C05G097930Wild cucumber (PI 183967)cpiwmbB139
Cla97C05G097930Wild cucumber (PI 183967)cpiwmbB210
Cla97C05G097930Wild cucumber (PI 183967)cpiwmbB565
Cla97C05G097930Cucumber (Chinese Long) v3cucwmbB140
Cla97C05G097930Cucumber (Chinese Long) v3cucwmbB207
Cla97C05G097930Cucumber (Chinese Long) v2cuwmbB137
Cla97C05G097930Cucumber (Chinese Long) v2cuwmbB205
Cla97C05G097930Cucumber (Chinese Long) v2cuwmbB540
Cla97C05G097930Bottle gourd (USVL1VR-Ls)lsiwmbB093
Cla97C05G097930Bottle gourd (USVL1VR-Ls)lsiwmbB189
Cla97C05G097930Bottle gourd (USVL1VR-Ls)lsiwmbB285
Cla97C05G097930Bottle gourd (USVL1VR-Ls)lsiwmbB373
Cla97C05G097930Melon (DHL92) v3.6.1medwmbB242
Cla97C05G097930Melon (DHL92) v3.6.1medwmbB325
Cla97C05G097930Melon (DHL92) v3.5.1mewmbB194
Cla97C05G097930Melon (DHL92) v3.5.1mewmbB256
Cla97C05G097930Melon (DHL92) v3.5.1mewmbB383
Cla97C05G097930Watermelon (Charleston Gray)wcgwmbB073
Cla97C05G097930Watermelon (Charleston Gray)wcgwmbB229
Cla97C05G097930Watermelon (Charleston Gray)wcgwmbB270
Cla97C05G097930Watermelon (97103) v1wmwmbB207
Cla97C05G097930Watermelon (97103) v1wmwmbB372
Cla97C05G097930Watermelon (97103) v1wmwmbB403
Cla97C05G097930Wax gourdwgowmbB572
Cla97C05G097930Wax gourdwgowmbB646