Cla97C05G096100 (gene) Watermelon (97103) v2

NameCla97C05G096100
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionScarecrow-like 1 transcription factor
LocationCla97Chr05 : 24231870 .. 24232258 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGAATTTGATAACTTGGTAGCCACAGCAAGAGGTGTCGTGTCTATCGATGGAGATCCATTCCAGCGTCTTGGCGCTTACATGGTGGAAGGGTTGGTGGCGAGGAAAGAGGAATCGGGGGTGAATATATATCGGACTCTAAACTATAGAGAGCCTGCAAGTGATGATTAGTTATCTTTTATGCATATGGTATATGAAATCTGCCCCTATTTGAAGTTCGGTTACATGGCAGTGAATGGGGCAATTATCTAGGCCTATGGAAACGAAGACCGCATCCACATCATAGACTTCCAGATTACTCAGGGGACGTAGTGGTTAACTCTTCTTCAGGCACTTGCAGCAAGGCCAAGTGGGCCTCCCCATGTGAGGATAACCGGTATCATTGA

mRNA sequence

ATGAAGGAATTTGATAACTTGGTAGCCACAGCAAGAGGTGTCGTGTCTATCGATGGAGATCCATTCCAGCGTCTTGGCGCTTACATGGTGGAAGGGTTGGTGGCGAGGAAAGAGGAATCGGGGGTGAATATATATCGGACTCTAAACTATAGAGAGCCTGCAATTCGGTTACATGGCAGTGAATGGGGCAATTATCTAGGCCTATGGAAACGAAGACCGCATCCACATCATAGACTTCCAGATTACTCAGGGGACGTAGTGGTTAACTCTTCTTCAGGCACTTGCAGCAAGGCCAAGTGGGCCTCCCCATGTGAGGATAACCGGTATCATTGA

Coding sequence (CDS)

ATGAAGGAATTTGATAACTTGGTAGCCACAGCAAGAGGTGTCGTGTCTATCGATGGAGATCCATTCCAGCGTCTTGGCGCTTACATGGTGGAAGGGTTGGTGGCGAGGAAAGAGGAATCGGGGGTGAATATATATCGGACTCTAAACTATAGAGAGCCTGCAATTCGGTTACATGGCAGTGAATGGGGCAATTATCTAGGCCTATGGAAACGAAGACCGCATCCACATCATAGACTTCCAGATTACTCAGGGGACGTAGTGGTTAACTCTTCTTCAGGCACTTGCAGCAAGGCCAAGTGGGCCTCCCCATGTGAGGATAACCGGTATCATTGA

Protein sequence

MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPAIRLHGSEWGNYLGLWKRRPHPHHRLPDYSGDVVVNSSSGTCSKAKWASPCEDNRYH
BLAST of Cla97C05G096100 vs. NCBI nr
Match: XP_004151967.1 (PREDICTED: scarecrow-like protein 21 [Cucumis sativus] >KGN57951.1 hypothetical protein Csa_3G405510 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 5.3e-17
Identity = 46/54 (85.19%), Postives = 48/54 (88.89%), Query Frame = 0

Query: 1   MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA 55
           MK+FDNLVATARG VSI G+P QRLGAYMVEGLVARKEESG NIYR LN REPA
Sbjct: 240 MKDFDNLVATARGAVSIGGEPIQRLGAYMVEGLVARKEESGANIYRALNCREPA 293

BLAST of Cla97C05G096100 vs. NCBI nr
Match: XP_008454576.1 (PREDICTED: scarecrow-like protein 21 [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 5.3e-17
Identity = 46/54 (85.19%), Postives = 48/54 (88.89%), Query Frame = 0

Query: 1   MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA 55
           MK+FDNLVATARG VSI G+P QRLGAYMVEGLVARKEESG NIYR LN REPA
Sbjct: 240 MKDFDNLVATARGAVSIGGEPIQRLGAYMVEGLVARKEESGANIYRALNCREPA 293

BLAST of Cla97C05G096100 vs. NCBI nr
Match: XP_022940516.1 (scarecrow-like protein 21 [Cucurbita moschata])

HSP 1 Score: 93.2 bits (230), Expect = 5.9e-16
Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = 0

Query: 1   MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA 55
           M++FDNLVA ARG VSI G+P QRLGAYMVEGLVARKEESG NIYR LN REPA
Sbjct: 228 MEDFDNLVAIARGAVSISGEPIQRLGAYMVEGLVARKEESGANIYRALNCREPA 281

BLAST of Cla97C05G096100 vs. NCBI nr
Match: XP_022981431.1 (scarecrow-like protein 21 [Cucurbita maxima])

HSP 1 Score: 93.2 bits (230), Expect = 5.9e-16
Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = 0

Query: 1   MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA 55
           M++FDNLVA ARG VSI G+P QRLGAYMVEGLVARKEESG NIYR LN REPA
Sbjct: 225 MEDFDNLVAIARGAVSISGEPIQRLGAYMVEGLVARKEESGANIYRALNCREPA 278

BLAST of Cla97C05G096100 vs. NCBI nr
Match: XP_023521994.1 (scarecrow-like protein 21 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 93.2 bits (230), Expect = 5.9e-16
Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = 0

Query: 1   MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA 55
           M++FDNLVA ARG VSI G+P QRLGAYMVEGLVARKEESG NIYR LN REPA
Sbjct: 227 MEDFDNLVAIARGAVSISGEPIQRLGAYMVEGLVARKEESGANIYRALNCREPA 280

BLAST of Cla97C05G096100 vs. TrEMBL
Match: tr|A0A1S3BYH5|A0A1S3BYH5_CUCME (scarecrow-like protein 21 OS=Cucumis melo OX=3656 GN=LOC103494964 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.5e-17
Identity = 46/54 (85.19%), Postives = 48/54 (88.89%), Query Frame = 0

Query: 1   MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA 55
           MK+FDNLVATARG VSI G+P QRLGAYMVEGLVARKEESG NIYR LN REPA
Sbjct: 240 MKDFDNLVATARGAVSIGGEPIQRLGAYMVEGLVARKEESGANIYRALNCREPA 293

BLAST of Cla97C05G096100 vs. TrEMBL
Match: tr|A0A0A0LD17|A0A0A0LD17_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G405510 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.5e-17
Identity = 46/54 (85.19%), Postives = 48/54 (88.89%), Query Frame = 0

Query: 1   MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPA 55
           MK+FDNLVATARG VSI G+P QRLGAYMVEGLVARKEESG NIYR LN REPA
Sbjct: 240 MKDFDNLVATARGAVSIGGEPIQRLGAYMVEGLVARKEESGANIYRALNCREPA 293

BLAST of Cla97C05G096100 vs. TrEMBL
Match: tr|A0A1U8KK40|A0A1U8KK40_GOSHI (scarecrow-like protein 21 OS=Gossypium hirsutum OX=3635 GN=LOC107917917 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.0e-13
Identity = 39/53 (73.58%), Postives = 43/53 (81.13%), Query Frame = 0

Query: 1   MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREP 54
           M EFD L+A ARG VSI G+P QRLGAYMVEGLVARKE SG +IYR L+ REP
Sbjct: 227 MDEFDKLIAKARGAVSISGEPIQRLGAYMVEGLVARKEASGSSIYRALHCREP 279

BLAST of Cla97C05G096100 vs. TrEMBL
Match: tr|A0A2P5YXD1|A0A2P5YXD1_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA00319 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.0e-13
Identity = 39/53 (73.58%), Postives = 43/53 (81.13%), Query Frame = 0

Query: 1   MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREP 54
           M EFD L+A ARG VSI G+P QRLGAYMVEGLVARKE SG +IYR L+ REP
Sbjct: 227 MDEFDKLIAKARGAVSISGEPIQRLGAYMVEGLVARKEASGSSIYRALHCREP 279

BLAST of Cla97C05G096100 vs. TrEMBL
Match: tr|A0A2P5R6Y6|A0A2P5R6Y6_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD20520 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.0e-13
Identity = 39/53 (73.58%), Postives = 43/53 (81.13%), Query Frame = 0

Query: 1   MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREP 54
           M EFD L+A ARG VSI G+P QRLGAYMVEGLVARKE SG +IYR L+ REP
Sbjct: 227 MDEFDKLIAKARGAVSISGEPIQRLGAYMVEGLVARKEASGSSIYRALHCREP 279

BLAST of Cla97C05G096100 vs. Swiss-Prot
Match: sp|Q69VG1|CIGR1_ORYSJ (Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CIGR1 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-12
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 0

Query: 2   KEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREP 54
           +EF  LV  ARGVVSI+G+P QRLGAY++EGLVAR   SG NIYR L  REP
Sbjct: 218 EEFHKLVQEARGVVSINGEPIQRLGAYLLEGLVARHGNSGTNIYRALKCREP 269

BLAST of Cla97C05G096100 vs. Swiss-Prot
Match: sp|Q8GVE1|CIGR2_ORYSJ (Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=CIGR2 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.2e-09
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 0

Query: 5   DNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREP 54
           D ++   R +VS+ G+P +RLGAYMVEGLVAR   SG++IY+ L  +EP
Sbjct: 194 DMMIPELRKIVSVSGEPLERLGAYMVEGLVARLASSGISIYKALKCKEP 242

BLAST of Cla97C05G096100 vs. Swiss-Prot
Match: sp|Q9S7H5|SCL21_ARATH (Scarecrow-like protein 21 OS=Arabidopsis thaliana OX=3702 GN=SCL21 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-08
Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = 0

Query: 12  RGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREP 54
           RG+VSI G+P QRLGAYM+EGLVAR   SG +IY++L  REP
Sbjct: 77  RGMVSISGEPIQRLGAYMLEGLVARLAASGSSIYKSLQSREP 118

BLAST of Cla97C05G096100 vs. Swiss-Prot
Match: sp|Q9SDQ3|SCL1_ARATH (Scarecrow-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=SCL1 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-07
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 0

Query: 1   MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREP 54
           ++E  ++V   R +VSI GDP QR+ AYMVEGL AR   SG  IYR L  +EP
Sbjct: 238 LEEALSMVNELRQIVSIQGDPSQRIAAYMVEGLAARMAASGKFIYRALKCKEP 290

BLAST of Cla97C05G096100 vs. Swiss-Prot
Match: sp|Q8H125|SCL5_ARATH (Scarecrow-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=SCL5 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.0e-07
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 0

Query: 5   DNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREP 54
           D L++  + +VS+ G+P QRLGAYM+EGLVAR   SG +IY+ L  ++P
Sbjct: 247 DWLISQLQQMVSVSGEPVQRLGAYMLEGLVARLASSGSSIYKALRCKDP 295

BLAST of Cla97C05G096100 vs. TAIR10
Match: AT2G04890.1 (SCARECROW-like 21)

HSP 1 Score: 60.8 bits (146), Expect = 5.9e-10
Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = 0

Query: 12  RGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREP 54
           RG+VSI G+P QRLGAYM+EGLVAR   SG +IY++L  REP
Sbjct: 77  RGMVSISGEPIQRLGAYMLEGLVARLAASGSSIYKSLQSREP 118

BLAST of Cla97C05G096100 vs. TAIR10
Match: AT1G21450.1 (SCARECROW-like 1)

HSP 1 Score: 57.0 bits (136), Expect = 8.5e-09
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 0

Query: 1   MKEFDNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREP 54
           ++E  ++V   R +VSI GDP QR+ AYMVEGL AR   SG  IYR L  +EP
Sbjct: 238 LEEALSMVNELRQIVSIQGDPSQRIAAYMVEGLAARMAASGKFIYRALKCKEP 290

BLAST of Cla97C05G096100 vs. TAIR10
Match: AT1G50600.1 (scarecrow-like 5)

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-08
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 0

Query: 5   DNLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREP 54
           D L++  + +VS+ G+P QRLGAYM+EGLVAR   SG +IY+ L  ++P
Sbjct: 247 DWLISQLQQMVSVSGEPVQRLGAYMLEGLVARLASSGSSIYKALRCKDP 295

BLAST of Cla97C05G096100 vs. TAIR10
Match: AT4G17230.1 (SCARECROW-like 13)

HSP 1 Score: 53.1 bits (126), Expect = 1.2e-07
Identity = 25/43 (58.14%), Postives = 29/43 (67.44%), Query Frame = 0

Query: 14  VVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLNYREPAIR 57
           +VS+ G P QRLG YM EGL AR E SG NIY++L   EP  R
Sbjct: 184 MVSVSGSPIQRLGTYMAEGLRARLEGSGSNIYKSLKCNEPTGR 226

BLAST of Cla97C05G096100 vs. TAIR10
Match: AT5G48150.1 (GRAS family transcription factor)

HSP 1 Score: 52.0 bits (123), Expect = 2.7e-07
Identity = 22/44 (50.00%), Postives = 33/44 (75.00%), Query Frame = 0

Query: 6   NLVATARGVVSIDGDPFQRLGAYMVEGLVARKEESGVNIYRTLN 50
           +++   R +VS+ G+P QRLGAY++EGLVA+   SG +IY+ LN
Sbjct: 140 SMMEKLRQMVSVSGEPIQRLGAYLLEGLVAQLASSGSSIYKALN 183

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004151967.15.3e-1785.19PREDICTED: scarecrow-like protein 21 [Cucumis sativus] >KGN57951.1 hypothetical ... [more]
XP_008454576.15.3e-1785.19PREDICTED: scarecrow-like protein 21 [Cucumis melo][more]
XP_022940516.15.9e-1681.48scarecrow-like protein 21 [Cucurbita moschata][more]
XP_022981431.15.9e-1681.48scarecrow-like protein 21 [Cucurbita maxima][more]
XP_023521994.15.9e-1681.48scarecrow-like protein 21 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
tr|A0A1S3BYH5|A0A1S3BYH5_CUCME3.5e-1785.19scarecrow-like protein 21 OS=Cucumis melo OX=3656 GN=LOC103494964 PE=3 SV=1[more]
tr|A0A0A0LD17|A0A0A0LD17_CUCSA3.5e-1785.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G405510 PE=3 SV=1[more]
tr|A0A1U8KK40|A0A1U8KK40_GOSHI9.0e-1373.58scarecrow-like protein 21 OS=Gossypium hirsutum OX=3635 GN=LOC107917917 PE=3 SV=... [more]
tr|A0A2P5YXD1|A0A2P5YXD1_GOSBA9.0e-1373.58Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA00319 PE=3 SV... [more]
tr|A0A2P5R6Y6|A0A2P5R6Y6_GOSBA9.0e-1373.58Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD20520 PE=3 SV... [more]
Match NameE-valueIdentityDescription
sp|Q69VG1|CIGR1_ORYSJ1.2e-1267.31Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonic... [more]
sp|Q8GVE1|CIGR2_ORYSJ6.2e-0953.06Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonic... [more]
sp|Q9S7H5|SCL21_ARATH1.1e-0866.67Scarecrow-like protein 21 OS=Arabidopsis thaliana OX=3702 GN=SCL21 PE=1 SV=1[more]
sp|Q9SDQ3|SCL1_ARATH1.5e-0752.83Scarecrow-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=SCL1 PE=2 SV=1[more]
sp|Q8H125|SCL5_ARATH2.0e-0751.02Scarecrow-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=SCL5 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT2G04890.15.9e-1066.67SCARECROW-like 21[more]
AT1G21450.18.5e-0952.83SCARECROW-like 1[more]
AT1G50600.11.1e-0851.02scarecrow-like 5[more]
AT4G17230.11.2e-0758.14SCARECROW-like 13[more]
AT5G48150.12.7e-0750.00GRAS family transcription factor[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G096100.1Cla97C05G096100.1mRNA


Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..110
NoneNo IPR availablePANTHERPTHR31636:SF18SUBFAMILY NOT NAMEDcoord: 1..54
NoneNo IPR availablePANTHERPTHR31636FAMILY NOT NAMEDcoord: 1..54

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C05G096100ClCG05G014910Watermelon (Charleston Gray)wcgwmbB229
Cla97C05G096100Bhi09G001649Wax gourdwgowmbB573
The following gene(s) are paralogous to this gene:

None