Cla97C05G093810 (gene) Watermelon (97103) v2

Overview
NameCla97C05G093810
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein LOC105851746
LocationCla97Chr05 : 13938530 .. 13939192 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTAAAGAAGAGCTTTTTCAAGTTTTGTTTAGCAATGGATTAATCAAACAAGAGAATTTGCGAGGTGATGTCCCTGATACACAACTTAATGACAATCTAATGTGTTTATATCATGCTGGGGCAAAAGGTCATTCTATTGATCAATGCCCTCATTTCTCCCAGAAGATACAAGAGTTATTAGATTCTCGTTTCTTAGTAGTCTCACAGAAGACAATTAAAGAATCAGAGCGCTAACATGAAATACATGTTGTAGAAGAGCATGTTGCAGGCGAATTCTCGAAGGTTTCTCTAGAACGAAAACCATTAACGATATTTTACAAGGAGAAACCTAATACCACCACTTCCAATCCAAAACCAATTACCATACAGGTTCCATCTCCATTTGAGTATAAAAGCTCAAAAGCAGTACCATGGAATTATGAGTACAAGGTAATTGTTGAGTCTGGACCTATTCCTATAGACAATATTAATGAAATTAGAGGTATAACACGAAGTGGAAGGTGTTATATGCCAGAGGAATTATTGAAATACAAAGGAAAATCTAAGATAAATGATGCTATTGATTGTAAGGTAGAGGAACCCATGGTGGTGAGAAGTCGAGAAGCAAAAGAGCCAGCATCTGAAGATGACATACAAGAGTTTTTAAGACTTGTAAAGTAG

mRNA sequence

ATGTCTAAAGAAGAGCTTTTTCAAGTTTTGTTTAGCAATGGATTAATCAAACAAGAGAATTTGCGAGGTGATGTCCCTGATACACAACTTAATGACAATCTAATGTGTTTATATCATGCTGGGGCAAAAGAAGAGCATGTTGCAGGCGAATTCTCGAAGGTTTCTCTAGAACGAAAACCATTAACGATATTTTACAAGGAGAAACCTAATACCACCACTTCCAATCCAAAACCAATTACCATACAGGTTCCATCTCCATTTGAGTATAAAAGCTCAAAAGCAGTACCATGGAATTATGAGTACAAGGTAATTGTTGAGTCTGGACCTATTCCTATAGACAATATTAATGAAATTAGAGGTATAACACGAAGTGGAAGGTGTTATATGCCAGAGGAATTATTGAAATACAAAGGAAAATCTAAGATAAATGATGCTATTGATTGTAAGGTAGAGGAACCCATGGTGGTGAGAAGTCGAGAAGCAAAAGAGCCAGCATCTGAAGATGACATACAAGAGTTTTTAAGACTTGTAAAGTAG

Coding sequence (CDS)

ATGTCTAAAGAAGAGCTTTTTCAAGTTTTGTTTAGCAATGGATTAATCAAACAAGAGAATTTGCGAGGTGATGTCCCTGATACACAACTTAATGACAATCTAATGTGTTTATATCATGCTGGGGCAAAAGAAGAGCATGTTGCAGGCGAATTCTCGAAGGTTTCTCTAGAACGAAAACCATTAACGATATTTTACAAGGAGAAACCTAATACCACCACTTCCAATCCAAAACCAATTACCATACAGGTTCCATCTCCATTTGAGTATAAAAGCTCAAAAGCAGTACCATGGAATTATGAGTACAAGGTAATTGTTGAGTCTGGACCTATTCCTATAGACAATATTAATGAAATTAGAGGTATAACACGAAGTGGAAGGTGTTATATGCCAGAGGAATTATTGAAATACAAAGGAAAATCTAAGATAAATGATGCTATTGATTGTAAGGTAGAGGAACCCATGGTGGTGAGAAGTCGAGAAGCAAAAGAGCCAGCATCTGAAGATGACATACAAGAGTTTTTAAGACTTGTAAAGTAG

Protein sequence

MSKEELFQVLFSNGLIKQENLRGDVPDTQLNDNLMCLYHAGAKEEHVAGEFSKVSLERKPLTIFYKEKPNTTTSNPKPITIQVPSPFEYKSSKAVPWNYEYKVIVESGPIPIDNINEIRGITRSGRCYMPEELLKYKGKSKINDAIDCKVEEPMVVRSREAKEPASEDDIQEFLRLVK
Homology
[Close]
BLAST of Cla97C05G093810 vs. NCBI nr
Match: XP_022155098.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia])

HSP 1 Score: 132.1 bits (331), Expect = 1.9e-27
Identity = 82/241 (34.02%), Postives = 122/241 (50.62%), Query Frame = 0 

Query: 4   EELFQVLFSNGLIKQENLRGDVPDTQLNDNLMCLYHAGAK-------------------- 63
           + LF++L+ +G +  E+L  D+   + ++NL C YHAGA+                    
Sbjct: 567 QXLFEILWXHGYMSMEHLCPDIRCERYDENLTCPYHAGARGHPLEQCSCFKEKVQELLDL 626

Query: 64  ----------EEHV-------AGEFSKVSLERKPLTIFYKEKPNTTTSNPKPITIQVPSP 123
                     E+ +         E S  + + KPLT+ Y+EKP   +++ +PITIQVP+P
Sbjct: 627 KILTVTQSHQEQRIDVVEYVSTAESSSAAYKPKPLTVLYREKPEVPSNSWRPITIQVPAP 686

Query: 124 FEYKSSKAVPWNYEYKVIV----ESGPIPIDNINEIRGITRSGRCYMPEELLKY------ 179
           FEY SSKAVPW YE KV V    +S  +P+DNI    G+TR+GRCY PE LLK+      
Sbjct: 687 FEYSSSKAVPWKYECKVTVGQKAQSSSLPVDNITRGGGMTRTGRCYTPESLLKHTNKPNS 746

[Close]
BLAST of Cla97C05G093810 vs. NCBI nr
Match: XP_022158986.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia])

HSP 1 Score: 125.9 bits (315), Expect = 1.3e-25
Identity = 82/240 (34.17%), Postives = 115/240 (47.92%), Query Frame = 0 

Query: 5   ELFQVLFSNGLIKQENLRGDVPDTQLNDNLMCLYHAGAK--------------------- 64
           ELF++L  +G +  E L  ++     +++L C +HAGAK                     
Sbjct: 466 ELFEILLGSGYVSVEYLCPNLKYKGYDESLTCPFHAGAKGHSLEQCNSFRMKVQELLDSK 525

Query: 65  ----------------EEHVAGEFSKVSLERKPLTIFYKEKPNTTTSNPKPITIQVPSPF 124
                           E+    E S  +L+ K LTIFY EKPN    + KPITI VP+PF
Sbjct: 526 ILTVANSHQKKGINIVEDVSVAEGSSDALKPKCLTIFYSEKPNAPNCSRKPITITVPAPF 585

Query: 125 EYKSSKAVPWNYEYKVI----VESGPIPIDNINEIRGITRSGRCYMPEELLKYKGKS--- 179
           EYKSSKAVPW Y+ KV     V S P+PIDNI  + G+TR+GRCY P+ LLK   ++   
Sbjct: 586 EYKSSKAVPWKYQCKVTVGQDVSSPPLPIDNITGVGGLTRTGRCYTPDSLLKCVNETTSE 645

[Close]
BLAST of Cla97C05G093810 vs. NCBI nr
Match: XP_022143495.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia])

HSP 1 Score: 120.6 bits (301), Expect = 5.6e-24
Identity = 81/246 (32.93%), Postives = 114/246 (46.34%), Query Frame = 0 

Query: 4   EELFQVLFSNGLIKQENLRGDVPDTQLNDNLMCLYHAGAK-------------------- 63
           EELF++L  +G +  E L  ++     +++L C +HAGAK                    
Sbjct: 400 EELFEILLGSGYVSVEYLCPNLKYKGYDESLTCPFHAGAKGHALEQCNSFRMIVQELLDS 459

Query: 64  ----------------------EEHVAGEFSKVSLERKPLTIFYKEKPNTTTSNPKPITI 123
                                  E    E S  +L+ K LTIFY EKP+    + KPITI
Sbjct: 460 KILTVANSHQKKGINVVEDVSVAEGSIAEGSSDALKPKRLTIFYSEKPDAPNCSRKPITI 519

Query: 124 QVPSPFEYKSSKAVPWNYEYKVI----VESGPIPIDNINEIRGITRSGRCYMPEELLKYK 179
            VP+PFEYKSSKAVPW YE KV     V S P+P+DNI  + G+T +GRCY P+ LLK  
Sbjct: 520 TVPAPFEYKSSKAVPWKYECKVTVGQDVSSPPLPVDNITGVGGLTXTGRCYTPDSLLKRV 579

[Close]
BLAST of Cla97C05G093810 vs. NCBI nr
Match: XP_022147189.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia])

HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 82/241 (34.02%), Postives = 113/241 (46.89%), Query Frame = 0 

Query: 5   ELFQVLFSNGLIKQENLRGDVPDTQ-LNDNLMCLYHAGAK-------------------- 64
           ELF++L  +G I  E L    P  +  +++L C +H GAK                    
Sbjct: 506 ELFEILLGSGYISVEYL---CPKYKGYDESLTCXFHXGAKGHSLEQCNXFRMKVQELLDS 565

Query: 65  -----------------EEHVAGEFSKVSLERKPLTIFYKEKPNTTTSNPKPITIQVPSP 124
                            E+ +  E S  SL+ KPLTIFY+EKP+  + + KP  I VP P
Sbjct: 566 KILTXANSHXKKXTNVVEDILVAEGSSDSLKPKPLTIFYREKPDAPSCSRKPXXITVPXP 625

Query: 125 FEYKSSKAVPWNYEYKVI----VESGPIPIDNINEIRGITRSGRCYMPEELLKYKGKSKI 179
           FEYKSSKAVPW YE KV     V S  +P+DNI  + G+TR+GRCY P+ LLK   ++  
Sbjct: 626 FEYKSSKAVPWKYECKVTVGQDVSSPSLPVDNITGVGGLTRTGRCYTPDSLLKRVNETTS 685

[Close]
BLAST of Cla97C05G093810 vs. NCBI nr
Match: XP_022150030.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111018303 [Momordica charantia])

HSP 1 Score: 107.5 bits (267), Expect = 4.9e-20
Identity = 53/96 (55.21%), Postives = 68/96 (70.83%), Query Frame = 0 

Query: 44  EEHVAGEFSKVSLERKPLTIFYKEKPNTTTSNPKPITIQVPSPFEYKSSKAVPWNYEYKV 103
           E+ +  E S  S++ K LTIFY+EKP+  + + KPITI VP+PFEYKSSKAVPW YE KV
Sbjct: 27  EDILVAEGSSDSIKPKRLTIFYREKPDAPSCSRKPITITVPAPFEYKSSKAVPWKYECKV 86

Query: 104 I----VESGPIPIDNINEIRGITRSGRCYMPEELLK 136
                V S  +P+DNI  + G+TR+GRCY P+ LLK
Sbjct: 87  TVGQDVSSPSLPVDNITGVGGLTRTGRCYTPDSLLK 122

[Close]
BLAST of Cla97C05G093810 vs. TrEMBL
Match: tr|A0A1S4E260|A0A1S4E260_CUCME (uncharacterized protein LOC107991629 OS=Cucumis melo OX=3656 GN=LOC107991629 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 8.0e-19
Identity = 70/197 (35.53%), Postives = 107/197 (54.31%), Query Frame = 0 

Query: 1   MSKEELFQVLFSNGLIKQENLRGDVPDTQLNDNLMCLYHAGAKEEHVAGEFSKVS----- 60
           M  EELF+ LF  G + Q+ L  ++     +++  C++H G    HV  +  K       
Sbjct: 270 MPMEELFKGLFEAGYVSQKYLDPNIKYEGYDESRHCIFHQGV-VGHVVQQCKKFRSKVQQ 329

Query: 61  -LERKPLTIFYKE-KPNTTTSNPKPITIQVPSPFEYKSSKAVPWNYEYKVIVESGPIPID 120
            ++ K LT FY+E +  +T  NPK +TI V SPF+ K  K VPW Y+ +VI      P+D
Sbjct: 330 LMDSKILTFFYQESRSESTFYNPKKLTIHVSSPFKCKDLKVVPWWYDCQVITG----PVD 389

Query: 121 NINEIRGITRSGRCYMPEEL--------LKYKGKSKINDAID-CK---VEEPMVVRSREA 179
           NI  I GITRSGRCY P+ L        L+   K++  +  + CK   VE P++ +  E 
Sbjct: 390 NIIGISGITRSGRCYKPDNLTVPSDGLILQQGSKNEKRNVKELCKDQDVEMPIIAKYIEY 449

[Close]
BLAST of Cla97C05G093810 vs. TrEMBL
Match: tr|A0A061E378|A0A061E378_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_008095 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.7e-16
Identity = 67/177 (37.85%), Postives = 94/177 (53.11%), Query Frame = 0 

Query: 29   QLNDNLMCLYHAGAKEEHVA-------GEFSKVSL---ERKPLTIFYKEKPN-----TTT 88
            +L D+ +  ++ GA+E  V         E +  S    + KPLTIFY+E  +     + T
Sbjct: 1297 ELMDSSVIEFYEGAEENLVGTINRDTPAEVASSSFGANKPKPLTIFYEENKSPMNDTSPT 1356

Query: 89   SNPKPITIQVPSPFEYKSSKAVPWNYEYKVI--VESGP-IPIDNINEIRGITRSGRCYMP 148
             +   ITI+VPSPF YKS KAVPWNYE  ++  V S P    ++I  + GITRSGRCY P
Sbjct: 1357 MSRNGITIEVPSPFPYKSDKAVPWNYECNILGTVSSTPQASFEDITGVGGITRSGRCYSP 1416

Query: 149  EELLKY-KGK--------SKINDAIDCKVEEPMVVRSREAKEPASEDDIQEFLRLVK 179
            E   K  KGK         K +     +V+E +V  + E K P +E +  EFL+ +K
Sbjct: 1417 EAAEKVGKGKPAQGEGGLKKADTFSKNQVDESVVAPNNEVKNPVTEKEEGEFLKFIK 1473

[Close]
BLAST of Cla97C05G093810 vs. TrEMBL
Match: tr|A0A061EXR3|A0A061EXR3_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_024883 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.4e-15
Identity = 60/177 (33.90%), Postives = 89/177 (50.28%), Query Frame = 0 

Query: 29   QLNDNLMCLYHAGAKEEHVAGEFSKVSLE----------RKPLTIFYKEKPN-----TTT 88
            +L D+ +  ++ GA+E  V   +     E           KPLTIFY+E  +     + T
Sbjct: 1223 ELMDSSIIEFYEGAEENLVGTIYGDTPAEVASSSFGANKPKPLTIFYEENKSPMNDTSPT 1282

Query: 89   SNPKPITIQVPSPFEYKSSKAVPWNYEYKVIVESGPIP---IDNINEIRGITRSGRCYMP 148
                 ITI+VPSPF YK+ KAVPWNYE  ++  +   P    ++I  + GITRSGRCY P
Sbjct: 1283 MIRNGITIEVPSPFPYKNDKAVPWNYECNILGTASSAPQASFEDITGVGGITRSGRCYSP 1342

Query: 149  EELLKYK---------GKSKINDAIDCKVEEPMVVRSREAKEPASEDDIQEFLRLVK 179
            E   + +         G  K +     +V+E +V  + E K P +E +  EFL+ +K
Sbjct: 1343 EVAERVEKGKPAQGEGGLKKADTFSKDQVDEFVVAPNNEVKSPVTEKEAGEFLKFIK 1399

[Close]
BLAST of Cla97C05G093810 vs. TrEMBL
Match: tr|A0A061E2I6|A0A061E2I6_THECC (RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein OS=Theobroma cacao OX=3641 GN=TCM_007834 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.4e-15
Identity = 67/207 (32.37%), Postives = 99/207 (47.83%), Query Frame = 0 

Query: 1   MSKEELFQVLFSNGLIKQENLRGDVPDTQLNDNLMCLYHAGA---------KEEHVAGEF 60
           M  +++F+ L     I  E +  D  +   +    C +H GA            H   E 
Sbjct: 476 MPMDKVFEALSKINAITPEPI--DTKELGHDLTYSCKFHMGAIGHSIQNCDGFRHTPAEV 535

Query: 61  SKVSL---ERKPLTIFYKEKPN-----TTTSNPKPITIQVPSPFEYKSSKAVPWNYEYKV 120
           +  S    + KPLTIFY+E  +     + T     ITI+VPSPF YKS KAVPWNY+  +
Sbjct: 536 ASSSFGANKPKPLTIFYEENKSPMNDTSPTMIRNGITIEVPSPFPYKSDKAVPWNYQCNI 595

Query: 121 IVESGPIP---IDNINEIRGITRSGRCYMPEELLKY-KGK--------SKINDAIDCKVE 179
              +   P    +++  + GITRSGRCY PE + +  KGK         K +     +V+
Sbjct: 596 SGTASSAPQASFEDLTGVGGITRSGRCYSPEVVERVGKGKPAQEEGGLKKADTFSKDQVD 655

[Close]
BLAST of Cla97C05G093810 vs. TrEMBL
Match: tr|A0A061DPM2|A0A061DPM2_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_003960 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.6e-14
Identity = 64/177 (36.16%), Postives = 91/177 (51.41%), Query Frame = 0 

Query: 29   QLNDNLMCLYHAGAKEEHVA-------GEFSKVSL---ERKPLTIFYKE--KPNTTTSNP 88
            +L D+ +  ++ GA+E  V         E +  S    + KPLTIFY+E   P   TS  
Sbjct: 1129 ELMDSSVIEFYEGAEENLVGTINGDTPAEMASSSFGANKPKPLTIFYEENRSPMNDTSPT 1188

Query: 89   ---KPITIQVPSPFEYKSSKAVPWNYEYKVIVESGPIPIDNINEIRG---ITRSGRCYMP 148
                 ITI+VPSPF YKS KAVPWNYE  ++  +   P  +  ++ G   ITRSGRCY P
Sbjct: 1189 MIRSGITIEVPSPFPYKSDKAVPWNYECNILGTASSAPQASFEDLTGVGDITRSGRCYSP 1248

Query: 149  EELLKY-KGK--------SKINDAIDCKVEEPMVVRSREAKEPASEDDIQEFLRLVK 179
            E   +  KGK         K +     +V+E +V  + E K P ++ +  EFL+ +K
Sbjct: 1249 EVAERVGKGKPAQGEGGLKKADTFSKDQVDESVVAPNNEVKNPVTKKEAGEFLKFIK 1305

The following BLAST results are available for this feature:
BLAST of Cla97C05G093810 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022155098.11.9e-2734.02LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica ch... [more]
XP_022158986.11.3e-2534.17LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia][more]
XP_022143495.15.6e-2432.93LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia][more]
XP_022147189.11.2e-2334.02LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia][more]
XP_022150030.14.9e-2055.21LOW QUALITY PROTEIN: uncharacterized protein LOC111018303 [Momordica charantia][more]
BLAST of Cla97C05G093810 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E260|A0A1S4E260_CUCME8.0e-1935.53uncharacterized protein LOC107991629 OS=Cucumis melo OX=3656 GN=LOC107991629 PE=... [more]
tr|A0A061E378|A0A061E378_THECC3.7e-1637.85Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_008095 PE=4 SV=1[more]
tr|A0A061EXR3|A0A061EXR3_THECC2.4e-1533.90Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_024883 PE=4 SV=1[more]
tr|A0A061E2I6|A0A061E2I6_THECC2.4e-1532.37RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein... [more]
tr|A0A061DPM2|A0A061DPM2_THECC1.6e-1436.16Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_003960 PE=4 SV=1[more]
BLAST of Cla97C05G093810 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C05G093810 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G093810.1Cla97C05G093810.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C05G093810Bottle gourd (USVL1VR-Ls)lsiwmbB329
Cla97C05G093810Bottle gourd (USVL1VR-Ls)lsiwmbB340
Cla97C05G093810Melon (DHL92) v3.6.1medwmbB431
Cla97C05G093810Melon (DHL92) v3.5.1mewmbB434
Cla97C05G093810Watermelon (Charleston Gray)wcgwmbB229
Cla97C05G093810Watermelon (97103) v1wmwmbB208
Cla97C05G093810Wax gourdwgowmbB194
Cla97C05G093810Silver-seed gourdcarwmbB0503
Cla97C05G093810Silver-seed gourdcarwmbB0795
Cla97C05G093810Cucumber (Gy14) v2cgybwmbB209
Cla97C05G093810Cucumber (Gy14) v1cgywmbB004
Cla97C05G093810Cucurbita maxima (Rimu)cmawmbB264
Cla97C05G093810Cucurbita maxima (Rimu)cmawmbB473
Cla97C05G093810Cucurbita moschata (Rifu)cmowmbB244
Cla97C05G093810Cucurbita moschata (Rifu)cmowmbB454
Cla97C05G093810Wild cucumber (PI 183967)cpiwmbB224
Cla97C05G093810Cucumber (Chinese Long) v3cucwmbB220
Cla97C05G093810Cucumber (Chinese Long) v2cuwmbB218