Cla97C05G092570 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G092570
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic
Location	Cla97Chr05 : 10666540 .. 10667845 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATCGGGTAGGACCGGCCTTTGTATTTTGATTTCCACTATAGCAAGTAGAGTAAGCTCCAACCATAGAGTTTATTACCTTCTTGTAGGACAACTTTTTTTTTTTTTCTTGAACTAATTTCTCTTAGTAATTGGTAGGGAAGGTAAGGTCCCACTGAAGAGACAACCCTCGTTACTCTCGGGTTTGTCGGACCGCCTACCCTTGATACTCGGGATACAGGCAGTGCAGAAAGTGTAAGTCGTACGAGTCCGATCCGAGCTCCTCAAACACTCTGAAAACAGAAAGAGGAGCCCTCGGTTCTCTCAGGTTTAACTTCCGCCTATCCCATCCCCCCTTACCAGAACTCCACTTTGATATGAAGAGTCTGTCCTCCGGACTGACGGGACTTATTATGAGTTATTTACCGGGGATTGGAATTGTTGAGGTTGGCTTTCGACTTTGAACATATTCAAAAAGACTTATAGATTACTGAAACGATGGTTACTACCGTAGCTTTGGCCGCTTACAATTGATAATTGATGGGCCGACCATTTCGACTGTCCCCCCCCCCCCCCCCCCCCCCCCCCCCACACACACACCAAGTAGCGCTCTAGATAGGCCGAAGCGATATAACTATAGCACGGTGGAGTCGACTTCTTTATCCGTGGTCGTGGTGGGGCCTACTCTCAATCTAAGCGGGATACCTTCATAGCCCTGCGTGAAGCTAGAAGTAACTACTTTCTATTTTGCTTATAGAATAGATAGAAGGATCTCATCTCTTTTAATCACTTCGATTTCTAGCAGTAAACTCTTCCGAGGGACGTAAAAAGAGTCCTTCATTTCTCATTTTCTTCACTTCCCAAGATATTTAGGGAAAAGCCCCCTTTTTCAGTACAATAAGGGAGTGCTTTTCTTCGGAGGACTGGCTATCCCAATTCCAAAAATCTTTACGACTTTCAGTATCTTATCGATGGCTTCCCTTGCATTGCCCGGTATGAGCGGTTTTGTTGCAGAATTAATAGTCTTTTTTGGAATAATTACCAGCCAAAAATATCTTTTAATGACAAAAATACTAATTACTTTGGTAATGGCAATTGGAATGATATTAACTCCCATTTATTTATTATCTATGTTACGCCAGATGTTCTATGGATACAAGCTTTTTAATGCTCAAAATTCTTATTTTTTTGATTCGGGACCACGAGAGTTGTTTGTTGCGATCTCTATCCTTATACCTGTCATAAGTATTGGTATTTATCCAGATTTTGTTTTCTCACTATCAGTTGACAAGGTCGAAGCTATTTTATCTAATAATTATTTTTAA

mRNA sequence

ATGGTATCGGGTAGGACCGGCCTTTGTATTTTGATTTCCACTATAGCAATAATTGGTAGGGAAGGTAAGGTCCCACTGAAGAGACAACCCTCGTTACTCTCGGGTTTGTCGGACCGCCTACCCTTGATACTCGGGATACAGGCAGTGCAGAAAGTGTTTAACTTCCGCCTATCCCATCCCCCCTTACCAGAACTCCACTTTGATATGAAGAGTCTGTCCTCCGGACTGACGGGACTTATTATGAGTTATTTACCGGGGATTGGAATTGTTGAGCACGGTGGAGTCGACTTCTTTATCCGTGGTCGTGGTGGGGCCTACTCTCAATCTAAGCGGGATACCTTCATAGCCCTGCGTGAAGCTAGAAGGAAAAGCCCCCTTTTTCAGTACAATAAGGGAGTGCTTTTCTTCGGAGGACTGGCTATCCCAATTCCAAAAATCTTTACGACTTTCAGTATCTTATCGATGGCTTCCCTTGCATTGCCCGGTATGAGCGGTTTTGTTGCAGAATTAATAGTCTTTTTTGGAATAATTACCAGCCAAAAATATCTTTTAATGACAAAAATACTAATTACTTTGGTAATGGCAATTGGAATGATATTAACTCCCATTTATTTATTATCTATGTTACGCCAGATGTTCTATGGATACAAGCTTTTTAATGCTCAAAATTCTTATTTTTTTGATTCGGGACCACGAGAGTTGTTTGTTGCGATCTCTATCCTTATACCTGTCATAAGTATTGGTATTTATCCAGATTTTGTTTTCTCACTATCAGTTGACAAGGTCGAAGCTATTTTATCTAATAATTATTTTTAA

Coding sequence (CDS)

ATGGTATCGGGTAGGACCGGCCTTTGTATTTTGATTTCCACTATAGCAATAATTGGTAGGGAAGGTAAGGTCCCACTGAAGAGACAACCCTCGTTACTCTCGGGTTTGTCGGACCGCCTACCCTTGATACTCGGGATACAGGCAGTGCAGAAAGTGTTTAACTTCCGCCTATCCCATCCCCCCTTACCAGAACTCCACTTTGATATGAAGAGTCTGTCCTCCGGACTGACGGGACTTATTATGAGTTATTTACCGGGGATTGGAATTGTTGAGCACGGTGGAGTCGACTTCTTTATCCGTGGTCGTGGTGGGGCCTACTCTCAATCTAAGCGGGATACCTTCATAGCCCTGCGTGAAGCTAGAAGGAAAAGCCCCCTTTTTCAGTACAATAAGGGAGTGCTTTTCTTCGGAGGACTGGCTATCCCAATTCCAAAAATCTTTACGACTTTCAGTATCTTATCGATGGCTTCCCTTGCATTGCCCGGTATGAGCGGTTTTGTTGCAGAATTAATAGTCTTTTTTGGAATAATTACCAGCCAAAAATATCTTTTAATGACAAAAATACTAATTACTTTGGTAATGGCAATTGGAATGATATTAACTCCCATTTATTTATTATCTATGTTACGCCAGATGTTCTATGGATACAAGCTTTTTAATGCTCAAAATTCTTATTTTTTTGATTCGGGACCACGAGAGTTGTTTGTTGCGATCTCTATCCTTATACCTGTCATAAGTATTGGTATTTATCCAGATTTTGTTTTCTCACTATCAGTTGACAAGGTCGAAGCTATTTTATCTAATAATTATTTTTAA

Protein sequence

MVSGRTGLCILISTIAIIGREGKVPLKRQPSLLSGLSDRLPLILGIQAVQKVFNFRLSHPPLPELHFDMKSLSSGLTGLIMSYLPGIGIVEHGGVDFFIRGRGGAYSQSKRDTFIALREARRKSPLFQYNKGVLFFGGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFVAISILIPVISIGIYPDFVFSLSVDKVEAILSNNYF

Homology

[Close]

BLAST of Cla97C05G092570 vs. NCBI nr
Match: YP_009326040.1 (NADH dehydrogenase subunit 4 (chloroplast) [Citrullus lanatus] >YP_009348082.1 NADH dehydrogenase subunit 4 (plastid) [Citrullus mucosospermus] >APD52532.1 NADH dehydrogenase subunit 4 (chloroplast) [Citrullus lanatus] >APW82513.1 NADH dehydrogenase subunit 4 (plastid) [Citrullus lanatus subsp. vulgaris] >APW82598.1 NADH dehydrogenase subunit 4 (plastid) [Citrullus lanatus subsp. vulgaris] >APW82768.1 NADH dehydrogenase subunit 4 (plastid) [Citrullus mucosospermus] >APW82853.1 NADH dehydrogenase subunit 4 (plastid) [Citrullus mucosospermus] >APW82938.1 NADH dehydrogenase subunit 4 (plastid) [Citrullus lanatus subsp. vulgaris] >APW83023.1 NADH dehydrogenase subunit 4 (plastid) [Citrullus lanatus subsp. vulgaris] >APW83108.1 NADH dehydrogenase subunit 4 (plastid) [Citrullus lanatus subsp. vulgaris] >APW83193.1 NADH dehydrogenase subunit 4 (plastid) [Citrullus lanatus subsp. vulgaris] >APW83278.1 NADH dehydrogenase subunit 4 (plastid) [Citrullus lanatus subsp. vulgaris] >APW83363.1 NADH dehydrogenase subunit 4 (plastid) [Citrullus mucosospermus])

HSP 1 Score: 241.9 bits (616), Expect = 2.5e-60
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 137 GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAI 196
           GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAI
Sbjct: 371 GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAI 430

Query: 197 GMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFVAISILIPVISIGIYPDFVFS 256
           GMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFVAISILIPVISIGIYPDFVFS
Sbjct: 431 GMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFVAISILIPVISIGIYPDFVFS 490

Query: 257 LSVDKVEAILSNNY 271
           LSVDKVEAILSN +
Sbjct: 491 LSVDKVEAILSNYF 504

[Close]

BLAST of Cla97C05G092570 vs. NCBI nr
Match: YP_009420845.1 (NADH dehydrogenase subunit 4 (chloroplast) [Citrullus colocynthis] >YP_009431607.1 NADH dehydrogenase subunit 4 (chloroplast) [Citrullus amarus] >YP_009431693.1 NADH dehydrogenase subunit 4 (chloroplast) [Citrullus rehmii] >ASP44513.1 NADH dehydrogenase subunit 4 (chloroplast) [Citrullus colocynthis] >ASY96208.1 NADH dehydrogenase subunit 4 (chloroplast) [Citrullus amarus] >ASY96294.1 NADH dehydrogenase subunit 4 (chloroplast) [Citrullus rehmii])

HSP 1 Score: 241.9 bits (616), Expect = 2.5e-60
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 137 GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAI 196
           GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAI
Sbjct: 334 GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAI 393

Query: 197 GMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFVAISILIPVISIGIYPDFVFS 256
           GMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFVAISILIPVISIGIYPDFVFS
Sbjct: 394 GMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFVAISILIPVISIGIYPDFVFS 453

Query: 257 LSVDKVEAILSNNY 271
           LSVDKVEAILSN +
Sbjct: 454 LSVDKVEAILSNYF 467

[Close]

BLAST of Cla97C05G092570 vs. NCBI nr
Match: YP_009456112.1 (NADH dehydrogenase subunit 4 (chloroplast) [Momordica charantia] >AUJ21879.1 NADH dehydrogenase subunit 4 (chloroplast) [Momordica charantia])

HSP 1 Score: 239.6 bits (610), Expect = 1.3e-59
Identity = 130/134 (97.01%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 137 GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAI 196
           GG+AIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAI
Sbjct: 334 GGMAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAI 393

Query: 197 GMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFVAISILIPVISIGIYPDFVFS 256
           GMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFVAISILIPVI IGIYPDFVFS
Sbjct: 394 GMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFVAISILIPVIGIGIYPDFVFS 453

Query: 257 LSVDKVEAILSNNY 271
           LSVDKVEAILSN +
Sbjct: 454 LSVDKVEAILSNYF 467

[Close]

BLAST of Cla97C05G092570 vs. NCBI nr
Match: AXR94522.1 (NADH-plastoquinone oxidoreductase subunit 4 (chloroplast) [Hodgsonia macrocarpa] >AXR94607.1 NADH-plastoquinone oxidoreductase subunit 4 (chloroplast) [Hodgsonia macrocarpa] >AXR94691.1 NADH-plastoquinone oxidoreductase subunit 4 (chloroplast) [Hodgsonia macrocarpa] >AXR94776.1 NADH-plastoquinone oxidoreductase subunit 4 (chloroplast) [Hodgsonia macrocarpa])

HSP 1 Score: 238.0 bits (606), Expect = 3.7e-59
Identity = 129/134 (96.27%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 137 GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAI 196
           GG+AIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAI
Sbjct: 365 GGMAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAI 424

Query: 197 GMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFVAISILIPVISIGIYPDFVFS 256
           G+ILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFVAISILIPVI IGIYPDFVFS
Sbjct: 425 GIILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFVAISILIPVIGIGIYPDFVFS 484

Query: 257 LSVDKVEAILSNNY 271
           LSVDKVEAILSN +
Sbjct: 485 LSVDKVEAILSNYF 498

[Close]

BLAST of Cla97C05G092570 vs. NCBI nr
Match: YP_009317436.1 (NADH dehydrogenase subunit 4 (chloroplast) [Coccinia grandis] >AOX48725.1 NADH dehydrogenase subunit 4 (chloroplast) [Coccinia grandis] >AOX48810.1 NADH dehydrogenase subunit 4 (chloroplast) [Coccinia grandis])

HSP 1 Score: 237.7 bits (605), Expect = 4.8e-59
Identity = 129/134 (96.27%), Postives = 131/134 (97.76%), Query Frame = 0


Query: 137 GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAI 196
           GGLAIPIPKIFTTFSILSMASLALPGMSGFVAEL+VFFGIITSQKYLLMTKILITLVMAI
Sbjct: 387 GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELVVFFGIITSQKYLLMTKILITLVMAI 446

Query: 197 GMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFVAISILIPVISIGIYPDFVFS 256
           GMILTPIYLLSMLRQMFYGYKLFNA NSYFFDSGPRELFVAISILIPVI IGIYPDFVFS
Sbjct: 447 GMILTPIYLLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVAISILIPVIGIGIYPDFVFS 506

Query: 257 LSVDKVEAILSNNY 271
           LSVDKVEAILSN +
Sbjct: 507 LSVDKVEAILSNYF 520

[Close]

BLAST of Cla97C05G092570 vs. TrEMBL
Match: tr|A0A1P8LEU5|A0A1P8LEU5_CITLA (NAD(P)H-quinone oxidoreductase chain 4 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=ndhD PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.7e-60
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 137 GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAI 196
           GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAI
Sbjct: 371 GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAI 430

Query: 197 GMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFVAISILIPVISIGIYPDFVFS 256
           GMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFVAISILIPVISIGIYPDFVFS
Sbjct: 431 GMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFVAISILIPVISIGIYPDFVFS 490

Query: 257 LSVDKVEAILSNNY 271
           LSVDKVEAILSN +
Sbjct: 491 LSVDKVEAILSNYF 504

[Close]

BLAST of Cla97C05G092570 vs. TrEMBL
Match: tr|A0A1P8LE40|A0A1P8LE40_9ROSI (NAD(P)H-quinone oxidoreductase chain 4 OS=Citrullus mucosospermus OX=519315 GN=ndhD PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.7e-60
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 137 GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAI 196
           GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAI
Sbjct: 371 GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAI 430

Query: 197 GMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFVAISILIPVISIGIYPDFVFS 256
           GMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFVAISILIPVISIGIYPDFVFS
Sbjct: 431 GMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFVAISILIPVISIGIYPDFVFS 490

Query: 257 LSVDKVEAILSNNY 271
           LSVDKVEAILSN +
Sbjct: 491 LSVDKVEAILSNYF 504

[Close]

BLAST of Cla97C05G092570 vs. TrEMBL
Match: tr|A0A249RXE0|A0A249RXE0_9ROSI (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Citrullus rehmii OX=260675 GN=ndhD PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.7e-60
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 137 GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAI 196
           GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAI
Sbjct: 334 GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAI 393

Query: 197 GMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFVAISILIPVISIGIYPDFVFS 256
           GMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFVAISILIPVISIGIYPDFVFS
Sbjct: 394 GMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFVAISILIPVISIGIYPDFVFS 453

Query: 257 LSVDKVEAILSNNY 271
           LSVDKVEAILSN +
Sbjct: 454 LSVDKVEAILSNYF 467

[Close]

BLAST of Cla97C05G092570 vs. TrEMBL
Match: tr|A0A249RX85|A0A249RX85_9ROSI (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Citrullus amarus OX=1567104 GN=ndhD PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.7e-60
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 137 GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAI 196
           GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAI
Sbjct: 334 GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAI 393

Query: 197 GMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFVAISILIPVISIGIYPDFVFS 256
           GMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFVAISILIPVISIGIYPDFVFS
Sbjct: 394 GMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFVAISILIPVISIGIYPDFVFS 453

Query: 257 LSVDKVEAILSNNY 271
           LSVDKVEAILSN +
Sbjct: 454 LSVDKVEAILSNYF 467

[Close]

BLAST of Cla97C05G092570 vs. TrEMBL
Match: tr|A0A2I6C050|A0A2I6C050_MOMCH (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Momordica charantia OX=3673 GN=ndhD PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 8.3e-60
Identity = 130/134 (97.01%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 137 GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAI 196
           GG+AIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAI
Sbjct: 334 GGMAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAI 393

Query: 197 GMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFVAISILIPVISIGIYPDFVFS 256
           GMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFVAISILIPVI IGIYPDFVFS
Sbjct: 394 GMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFVAISILIPVIGIGIYPDFVFS 453

Query: 257 LSVDKVEAILSNNY 271
           LSVDKVEAILSN +
Sbjct: 454 LSVDKVEAILSNYF 467

[Close]

BLAST of Cla97C05G092570 vs. Swiss-Prot
Match: sp|Q4VZL8|NU4C_CUCSA (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhD PE=2 SV=2)

HSP 1 Score: 235.0 bits (598), Expect = 1.0e-60
Identity = 127/134 (94.78%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 137 GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAI 196
           GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTK++ITLVMAI
Sbjct: 365 GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKMVITLVMAI 424

Query: 197 GMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFVAISILIPVISIGIYPDFVFS 256
           G+ILTPIYLLSMLRQMFYGYKLFNA+NSYFFDSGPRELFVAISILIPVI IGIYPDFVFS
Sbjct: 425 GIILTPIYLLSMLRQMFYGYKLFNAKNSYFFDSGPRELFVAISILIPVIGIGIYPDFVFS 484

Query: 257 LSVDKVEAILSNNY 271
           LSVDKVEAILSN +
Sbjct: 485 LSVDKVEAILSNYF 498

[Close]

BLAST of Cla97C05G092570 vs. Swiss-Prot
Match: sp|Q09WW8|NU4C_MORIN (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Morus indica OX=248361 GN=ndhD PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 2.0e-56
Identity = 118/135 (87.41%), Postives = 127/135 (94.07%), Query Frame = 0


Query: 137 GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAI 196
           GG+AI IPKIFTTFSILSMASLALPGMSGFVAELI+FFGI+TSQKYLLMTKILIT VMAI
Sbjct: 365 GGMAITIPKIFTTFSILSMASLALPGMSGFVAELILFFGILTSQKYLLMTKILITFVMAI 424

Query: 197 GMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFVAISILIPVISIGIYPDFVFS 256
           GMILTPIY LSMLRQMFYGYKLF A NSYF DSGPRE FV+ISIL+PVI+IGIYPDFVFS
Sbjct: 425 GMILTPIYSLSMLRQMFYGYKLFTATNSYFVDSGPREFFVSISILLPVIAIGIYPDFVFS 484

Query: 257 LSVDKVEAILSNNYF 272
           LSVDKVEA+LSN ++
Sbjct: 485 LSVDKVEALLSNYFY 499

[Close]

BLAST of Cla97C05G092570 vs. Swiss-Prot
Match: sp|B1NWJ9|NU4C_MANES (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Manihot esculenta OX=3983 GN=ndhD PE=3 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 4.4e-56
Identity = 116/135 (85.93%), Postives = 126/135 (93.33%), Query Frame = 0


Query: 137 GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAI 196
           GG+A  +PKIFTTFSILS+ASLALPGMSGF AELIVFFGIIT QKYLLM+KILIT VMA+
Sbjct: 365 GGMATSMPKIFTTFSILSLASLALPGMSGFFAELIVFFGIITGQKYLLMSKILITFVMAV 424

Query: 197 GMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFVAISILIPVISIGIYPDFVFS 256
           GMILTPIYLLSMLRQMFYGYKLFNA NSYFFDSGPRELFV+ISIL+PVI IG YPDFVFS
Sbjct: 425 GMILTPIYLLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVSISILLPVIGIGFYPDFVFS 484

Query: 257 LSVDKVEAILSNNYF 272
           LSVD+VEAILSN ++
Sbjct: 485 LSVDRVEAILSNYFY 499

[Close]

BLAST of Cla97C05G092570 vs. Swiss-Prot
Match: sp|Q0ZIW8|NU4C_VITVI (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Vitis vinifera OX=29760 GN=ndhD PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.3e-55
Identity = 118/135 (87.41%), Postives = 124/135 (91.85%), Query Frame = 0


Query: 137 GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAI 196
           GG+AIP+PKIFT FSILSMASLALPGMSGFVAELIVFFGIITSQK+LLM KILIT VMAI
Sbjct: 365 GGIAIPMPKIFTMFSILSMASLALPGMSGFVAELIVFFGIITSQKFLLMPKILITFVMAI 424

Query: 197 GMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFVAISILIPVISIGIYPDFVFS 256
           GMILTPIY LSM RQMFYGYKLFNA NSYFFDSGPRELFV ISI +PVI IGIYPDFV S
Sbjct: 425 GMILTPIYSLSMSRQMFYGYKLFNAPNSYFFDSGPRELFVLISIFLPVIGIGIYPDFVLS 484

Query: 257 LSVDKVEAILSNNYF 272
           LSVDKVEAILSN ++
Sbjct: 485 LSVDKVEAILSNFFY 499

[Close]

BLAST of Cla97C05G092570 vs. Swiss-Prot
Match: sp|Q09MC6|NU4C_CITSI (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Citrus sinensis OX=2711 GN=ndhD PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 4.9e-55
Identity = 117/132 (88.64%), Postives = 121/132 (91.67%), Query Frame = 0


Query: 137 GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAI 196
           GGLAIPIPKIFT FSILSMASLALPGMSGFVAELIVFFGIITSQK+ LM KI+IT VMAI
Sbjct: 365 GGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAI 424

Query: 197 GMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFVAISILIPVISIGIYPDFVFS 256
           GMILTPIY LSMLRQMFYGYKLFNA NSYFFDSGPRELFV ISIL+PVI IGIYPDFV S
Sbjct: 425 GMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLS 484

Query: 257 LSVDKVEAILSN 269
           LS DK EAI+SN
Sbjct: 485 LSADKAEAIISN 496

[Close]

BLAST of Cla97C05G092570 vs. TAIR10
Match: ATCG01050.1 (NADH-Ubiquinone/plastoquinone (complex I) protein)

HSP 1 Score: 200.3 bits (508), Expect = 1.5e-51
Identity = 106/135 (78.52%), Postives = 120/135 (88.89%), Query Frame = 0


Query: 137 GGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITLVMAI 196
           GG+AI IPKIFT F+ILSMASLALPGMSGF+AE IVFFGIITSQKY L++KI I  VMAI
Sbjct: 371 GGMAISIPKIFTMFTILSMASLALPGMSGFIAEFIVFFGIITSQKYFLISKIFIIFVMAI 430

Query: 197 GMILTPIYLLSMLRQMFYGYKLFNAQNSYFFDSGPRELFVAISILIPVISIGIYPDFVFS 256
           GMILTPIYLLSMLRQMFYGYKL N +N  FFDSGPRELF++ISIL+P+I IGIYPDFV S
Sbjct: 431 GMILTPIYLLSMLRQMFYGYKLINIKNFSFFDSGPRELFLSISILLPIIGIGIYPDFVLS 490

Query: 257 LSVDKVEAILSNNYF 272
           L+ DKVE+ILSN ++
Sbjct: 491 LASDKVESILSNYFY 505

[Close]

BLAST of Cla97C05G092570 vs. TAIR10
Match: ATMG00580.1 (NADH dehydrogenase subunit 4)

HSP 1 Score: 45.4 bits (106), Expect = 6.3e-05
Identity = 33/122 (27.05%), Postives = 61/122 (50.00%), Query Frame = 0


Query: 133 VLFFGGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKILITL 192
           V ++GGL   +P + T F   ++A+++ PG S F+ E ++  G             L+  
Sbjct: 364 VRYYGGLVSTMPNLSTIFFSFTLANMSSPGTSSFIGEFLILVGAFQRNS-------LVAT 423

Query: 193 VMAIGMILTPIYLLSMLRQMFYGYKLFNAQNSY---FFDSGPRELFVAISILIPVISIGI 252
           + A+GMIL   Y L +  ++  G    N +  +   F DS  RE+ + I  L+ ++ +G+
Sbjct: 424 LAALGMILGAAYSLWLYNRVVSG----NLKPDFLHKFSDSNGREVSIFIPFLVGLVRMGV 474

The following BLAST results are available for this feature:

BLAST of Cla97C05G092570 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009326040.1	2.5e-60	98.51	NADH dehydrogenase subunit 4 (chloroplast) [Citrullus lanatus] >YP_009348082.1 N...	[more]
YP_009420845.1	2.5e-60	98.51	NADH dehydrogenase subunit 4 (chloroplast) [Citrullus colocynthis] >YP_009431607...	[more]
YP_009456112.1	1.3e-59	97.01	NADH dehydrogenase subunit 4 (chloroplast) [Momordica charantia] >AUJ21879.1 NAD...	[more]
AXR94522.1	3.7e-59	96.27	NADH-plastoquinone oxidoreductase subunit 4 (chloroplast) [Hodgsonia macrocarpa]...	[more]
YP_009317436.1	4.8e-59	96.27	NADH dehydrogenase subunit 4 (chloroplast) [Coccinia grandis] >AOX48725.1 NADH d...	[more]

BLAST of Cla97C05G092570 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1P8LEU5\|A0A1P8LEU5_CITLA	1.7e-60	98.51	NAD(P)H-quinone oxidoreductase chain 4 OS=Citrullus lanatus subsp. vulgaris OX=2...	[more]
tr\|A0A1P8LE40\|A0A1P8LE40_9ROSI	1.7e-60	98.51	NAD(P)H-quinone oxidoreductase chain 4 OS=Citrullus mucosospermus OX=519315 GN=n...	[more]
tr\|A0A249RXE0\|A0A249RXE0_9ROSI	1.7e-60	98.51	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Citrullus rehmii OX=260...	[more]
tr\|A0A249RX85\|A0A249RX85_9ROSI	1.7e-60	98.51	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Citrullus amarus OX=156...	[more]
tr\|A0A2I6C050\|A0A2I6C050_MOMCH	8.3e-60	97.01	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Momordica charantia OX=...	[more]

BLAST of Cla97C05G092570 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q4VZL8\|NU4C_CUCSA	1.0e-60	94.78	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Cucumis sativus OX=3659...	[more]
sp\|Q09WW8\|NU4C_MORIN	2.0e-56	87.41	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Morus indica OX=248361 ...	[more]
sp\|B1NWJ9\|NU4C_MANES	4.4e-56	85.93	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Manihot esculenta OX=39...	[more]
sp\|Q0ZIW8\|NU4C_VITVI	1.3e-55	87.41	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Vitis vinifera OX=29760...	[more]
sp\|Q09MC6\|NU4C_CITSI	4.9e-55	88.64	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Citrus sinensis OX=2711...	[more]

BLAST of Cla97C05G092570 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG01050.1	1.5e-51	78.52	NADH-Ubiquinone/plastoquinone (complex I) protein	[more]
ATMG00580.1	6.3e-05	27.05	NADH dehydrogenase subunit 4	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
GO:0008137	NADH dehydrogenase (ubiquinone) activity

Vocabulary: **Biological Process**
Term	Definition
GO:0042773	ATP synthesis coupled electron transport
GO:0055114	oxidation-reduction process

Vocabulary: **INTERPRO**
Term	Definition
IPR022997	NADH_Q_OxRdtase_chain4
IPR003918	NADH_UbQ_OxRdtase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042773	ATP synthesis coupled electron transport
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0009536	plastid
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G092570.1	Cla97C05G092570.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003918	NADH:ubiquinone oxidoreductase	PANTHER	PTHR43507	FAMILY NOT NAMED	coord: 136..270
IPR022997	NADH-quinone oxidoreductase chain 4	PANTHER	PTHR43507:SF3	NAD P H-QUINONE OXIDOREDUCTASE CHAIN 4, CHLOROPLASTIC	coord: 136..270

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G092570	Watermelon (97103) v2	wmbwmbB021
Cla97C05G092570	Watermelon (97103) v2	wmbwmbB101
Cla97C05G092570	Silver-seed gourd	carwmbB0213
Cla97C05G092570	Silver-seed gourd	carwmbB0304
Cla97C05G092570	Silver-seed gourd	carwmbB0396
Cla97C05G092570	Cucumber (Gy14) v2	cgybwmbB206
Cla97C05G092570	Cucumber (Gy14) v2	cgybwmbB514
Cla97C05G092570	Cucumber (Gy14) v1	cgywmbB396
Cla97C05G092570	Cucumber (Gy14) v1	cgywmbB435
Cla97C05G092570	Cucurbita maxima (Rimu)	cmawmbB129
Cla97C05G092570	Cucurbita maxima (Rimu)	cmawmbB347
Cla97C05G092570	Cucurbita maxima (Rimu)	cmawmbB536
Cla97C05G092570	Cucurbita maxima (Rimu)	cmawmbB763
Cla97C05G092570	Cucurbita moschata (Rifu)	cmowmbB111
Cla97C05G092570	Cucurbita moschata (Rifu)	cmowmbB332
Cla97C05G092570	Cucurbita moschata (Rifu)	cmowmbB516
Cla97C05G092570	Cucurbita moschata (Rifu)	cmowmbB735
Cla97C05G092570	Wild cucumber (PI 183967)	cpiwmbB221
Cla97C05G092570	Wild cucumber (PI 183967)	cpiwmbB567
Cla97C05G092570	Cucumber (Chinese Long) v3	cucwmbB217
Cla97C05G092570	Cucumber (Chinese Long) v3	cucwmbB562
Cla97C05G092570	Cucumber (Chinese Long) v2	cuwmbB215
Cla97C05G092570	Cucumber (Chinese Long) v2	cuwmbB541
Cla97C05G092570	Bottle gourd (USVL1VR-Ls)	lsiwmbB236
Cla97C05G092570	Bottle gourd (USVL1VR-Ls)	lsiwmbB329
Cla97C05G092570	Melon (DHL92) v3.6.1	medwmbB178
Cla97C05G092570	Melon (DHL92) v3.6.1	medwmbB424
Cla97C05G092570	Melon (DHL92) v3.6.1	medwmbB543
Cla97C05G092570	Melon (DHL92) v3.5.1	mewmbB192
Cla97C05G092570	Melon (DHL92) v3.5.1	mewmbB434
Cla97C05G092570	Melon (DHL92) v3.5.1	mewmbB549
Cla97C05G092570	Watermelon (Charleston Gray)	wcgwmbB159
Cla97C05G092570	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G092570	Watermelon (97103) v1	wmwmbB206
Cla97C05G092570	Watermelon (97103) v1	wmwmbB343
Cla97C05G092570	Wax gourd	wgowmbB179
Cla97C05G092570	Wax gourd	wgowmbB258