Cla97C05G092250 (gene) Watermelon (97103) v2

Overview
NameCla97C05G092250
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptionpre-rRNA-processing protein TSR2
LocationCla97Chr05 : 10351152 .. 10353528 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGTGGGGGAAACTGCCTTCTCCCAGCTGATGCTTCTCCGTTGTTCCAGGAAGGTATTGGGTTGGTTTTATCTCGTTGGTCAGCTCTTCAGTTGGCAGTGGAAAATGAGTGGGGTGGTCGTGACTCTCGTCGTAAAGTTGAACTATTATGTTCAGACGTTTCCACGTGGTTTACACAGGACAAAGGTAATTTTACTCCCTTCCACTTGGATAATCTTGGTTCCTTCCTATCTTCGTGCAGTTCCACTTTCTGTAGATTGATCAGTTTCTCAGGTCATGTAGTGTTTTATTTTGCTAGCAATTAAACATTTCTTTGTTGTAACTTTTTGAAGAAGCAGCTTGTGTAAACATCTAAAAGCGAATTCATTAAATGGCTAGATAAGTGTTTAAAATAGTTCCCTGAGGCGCATGCTGAGGCATGGCCCCTAGAAGCAAGGCTCCCCTAAGGTGCCTGAAATGTTGCTCTTCAAGCCTAAGTTTCTACTATTTTTTAAATAAGAATTTCTAACCTTTGAAGAAGAAACTCAGAATATTCTTAAAAAGCATACATTTTTTCTGAAATAACAGCTCTACTTACTTAAACTTTTCATCATCTTATTATTTGCAATACTATTTTTCTTCATTTATATAAGAAAATTATTTAGATTTTTCCATTGTGTGCCTCAAGTGTTTTAAAAAGCCCTCCTGGGCACACACTTAGGCATGCCTAGGCTGAAGGCGCAAGTCTAGTGCACTCACAAAATAAGGCAAGTGCACGCCTTTTGTGAAGCCCCAAGGCTTTAAGCCCTGGGCCATGTGGCTTTTTCATTATCTTTAAATTATAGTAATAATTAAGGTTTTTTCTTTTTTTAAATAAAGAAAAAAGTCAAATTTACAAAGCCTAAATGCAAAACTTCTTGTGCTTAGTTTTTTTTTCTTTTTTCGCCCCTCCAACTTGCTCTCTCTTCTTTATGCATTACTTTTATATATAGTGCGGCTCACAAAAAAAGCTTGCACCTTTGCCTAAGCCTTAAAAGACTATTGCGCTTTATTGCACCTTGAGCTTTAAAAAACATTGTGTGCCTCATAAAAAGTTATTTTTTTGGCTCCTCATGCTTAAGTCTCAAAGTGGCTGCTATTGTGCTTTAGTGCATCTCAAGCTTTAAAGAAATATAGGTTCTAGCATGTATTTTGTCTTTGATATTCATGTTGGTCAATTAATGCTTGAATTCTTTTCCTTTTGATACTCTGAATTATTTTGAACTTTCTAGATGATAGTTGATTTGTGGTGTAACTTGGTACTTTGTAAGCGTGACATTCATAGAATTTGGTTATCTTGATCTAACAGAGTTATAATTTTTATCTTGCAGAGCCACTATATATTGATGATTTAGAAATGATTCTTGATGAAGCTATGCTTTCATTGAATACTCAGGTTGATGACGGTAGCATTGAGGAGGTATATTTTATGCGCCTCTCAATCCTCGTTAGTCTTGGAGGAATGCCCTTTTTCTCATAACTGAGGCCTTTTTTTGGTTCCACATGATGAAATAGCATGCCGTCACATCAGACTAAATTGATACAAATATTTGTGTGAACTGCTATGACTAACTACTGCTGATGGATGGTTTTTCTACCCAAATTGACTCCGGATGGTTCTCAATGTGACTTGTGAAAATGGAATTCTGGCAGAGATATTGTTATAAATTTGCTTCCAACTCTTTGGTTGGAATAGTTTGAGATACCATCAAAATTTTAGCTATTTATTATCATAGCTGTGACTTTAGAAGATATTGCTTGGAAAACAGTGGTGATTGTATAAATACCATCCTAGTTGAACAGAACCTTATATAGTTCATTAATTTCCAATTCTAATAACTTTTTACGTCTAAGTTAAAAGTGAATTTCTTTTCTTTGTAGTCATTTTCAATTTTCTGTAGGAGGTTACTGGAAAAGTATGCTTAAAAAGCTCATAATTTCTAATTGATTTGTCCAATCACATTCTGTACCGTTGTTGCTCTCTTCCTCTTATATTAGAAGAATGAAATACCGAATGGATACAGATGGAGAAAATGAGGATAGGGTAAACGTTGAGTGAGATTAATGATGTATTATCTTGTATTTAAAATCCCCTCTGAAAAGTGAAATGTGTTACTATCTTGTAGCCTCCTTCAATAATTTTGAGTAAACTACTCTTATTAATGGATTTTTGTTGCTTGTGTTTCTTATCTAATAATTCAGGTAGCTGAAAGATTGATGGTCATGCATGAGGAATGTTTGGATGGTAACTTTAGCTCTATTGAAAGGTTAAGGCAAACCCCTCTTCCTCAAGTTGCTCATTCTCACGTTAGCCAGGTAACAAAAATTTTTGTACTAAACAGTGTTCTTTCGTAG

mRNA sequence

ATGGAAGGTGGGGGAAACTGCCTTCTCCCAGCTGATGCTTCTCCGTTGTTCCAGGAAGGTATTGGGTTGGTTTTATCTCGTTGGTCAGCTCTTCAGTTGGCAGTGGAAAATGAGTGGGGTGGTCGTGACTCTCGTCGTAAAGTTGAACTATTATGTTCAGACGTTTCCACGTGGTTTACACAGGACAAAGAGCCACTATATATTGATGATTTAGAAATGATTCTTGATGAAGCTATGCTTTCATTGAATACTCAGGTTGATGACGGTAGCATTGAGGAGGTAGCTGAAAGATTGATGGTCATGCATGAGGAATGTTTGGATGGTAACTTTAGCTCTATTGAAAGGTTAAGGCAAACCCCTCTTCCTCAAGTTGCTCATTCTCACGTTAGCCAGGTAACAAAAATTTTTGTACTAAACAGTGTTCTTTCGTAG

Coding sequence (CDS)

ATGGAAGGTGGGGGAAACTGCCTTCTCCCAGCTGATGCTTCTCCGTTGTTCCAGGAAGGTATTGGGTTGGTTTTATCTCGTTGGTCAGCTCTTCAGTTGGCAGTGGAAAATGAGTGGGGTGGTCGTGACTCTCGTCGTAAAGTTGAACTATTATGTTCAGACGTTTCCACGTGGTTTACACAGGACAAAGAGCCACTATATATTGATGATTTAGAAATGATTCTTGATGAAGCTATGCTTTCATTGAATACTCAGGTTGATGACGGTAGCATTGAGGAGGTAGCTGAAAGATTGATGGTCATGCATGAGGAATGTTTGGATGGTAACTTTAGCTCTATTGAAAGGTTAAGGCAAACCCCTCTTCCTCAAGTTGCTCATTCTCACGTTAGCCAGGTAACAAAAATTTTTGTACTAAACAGTGTTCTTTCGTAG

Protein sequence

MEGGGNCLLPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFTQDKEPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQTPLPQVAHSHVSQVTKIFVLNSVLS
Homology
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BLAST of Cla97C05G092250 vs. NCBI nr
Match: XP_023534881.1 (pre-rRNA-processing protein TSR2 homolog isoform X1 [Cucurbita pepo subsp. pepo] >XP_023534882.1 pre-rRNA-processing protein TSR2 homolog isoform X2 [Cucurbita pepo subsp. pepo] >XP_023534883.1 pre-rRNA-processing protein TSR2 homolog isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 242.7 bits (618), Expect = 7.8e-61
Identity = 120/132 (90.91%), Postives = 126/132 (95.45%), Query Frame = 0 

Query: 1   MEGGGNCLLPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFT 60
           MEGG N LLPA A PLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSD+ TWFT
Sbjct: 1   MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 61  QDKEPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQTP 120
           Q+KEPLYIDDLEMILDEA+LSLNTQVDDGSIEEVAERL+VMHEECLDGNFSSIE+LRQ+P
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 121 LPQVAHSHVSQV 133
           LPQVA SHVSQV
Sbjct: 121 LPQVARSHVSQV 132

[Close]
BLAST of Cla97C05G092250 vs. NCBI nr
Match: XP_022936382.1 (pre-rRNA-processing protein TSR2 homolog [Cucurbita moschata])

HSP 1 Score: 241.1 bits (614), Expect = 2.3e-60
Identity = 119/132 (90.15%), Postives = 126/132 (95.45%), Query Frame = 0 

Query: 1   MEGGGNCLLPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFT 60
           MEGG N LLPA A PLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSD+ TWFT
Sbjct: 1   MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 61  QDKEPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQTP 120
           Q+KEPLYIDDLEMILDEA+LSLNTQVDDGSIEEVAERL+VMHEECLDGNFSSIE+LRQ+P
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 121 LPQVAHSHVSQV 133
           LP+VA SHVSQV
Sbjct: 121 LPRVARSHVSQV 132

[Close]
BLAST of Cla97C05G092250 vs. NCBI nr
Match: XP_022975934.1 (pre-rRNA-processing protein TSR2 homolog [Cucurbita maxima])

HSP 1 Score: 238.0 bits (606), Expect = 1.9e-59
Identity = 118/132 (89.39%), Postives = 125/132 (94.70%), Query Frame = 0 

Query: 1   MEGGGNCLLPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFT 60
           MEGG N LLPA A P FQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSD+ TWFT
Sbjct: 1   MEGGENRLLPAVALPSFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 61  QDKEPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQTP 120
           Q+KEPLYIDDLEMILDEA+LSLNTQVDDGSIEEVAERL+VMHEECLDGNFSSIE+LRQ+P
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 121 LPQVAHSHVSQV 133
           LP+VA SHVSQV
Sbjct: 121 LPKVARSHVSQV 132

[Close]
BLAST of Cla97C05G092250 vs. NCBI nr
Match: XP_022982103.1 (pre-rRNA-processing protein TSR2 homolog [Cucurbita maxima])

HSP 1 Score: 235.7 bits (600), Expect = 9.6e-59
Identity = 115/131 (87.79%), Postives = 123/131 (93.89%), Query Frame = 0 

Query: 1   MEGGGNCLLPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFT 60
           MEGGGN LLPADA PLFQEGIGLVLSRWSALQLAV+NEWGGRDSRRKVELLCSD+ TWFT
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 60

Query: 61  QDKEPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQTP 120
           Q+KE LYIDDLEMILDE MLSLNTQVDDGSIEEVAE+L+ MHEEC+DGNFSSI RLRQ+P
Sbjct: 61  QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIGRLRQSP 120

Query: 121 LPQVAHSHVSQ 132
           LP+ AHSHVSQ
Sbjct: 121 LPRGAHSHVSQ 131

[Close]
BLAST of Cla97C05G092250 vs. NCBI nr
Match: XP_022940503.1 (pre-rRNA-processing protein TSR2 homolog [Cucurbita moschata])

HSP 1 Score: 235.0 bits (598), Expect = 1.6e-58
Identity = 114/131 (87.02%), Postives = 123/131 (93.89%), Query Frame = 0 

Query: 1   MEGGGNCLLPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFT 60
           M+G GN LLPADA PLFQEGIGLVLSRWSALQLAV+NEWGGRDSRRKVELLCSD+ TWFT
Sbjct: 1   MDGSGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 60

Query: 61  QDKEPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQTP 120
           Q+KE LYIDDLEMILDE MLSLNTQVDDGSIEEVAE+L+ MHEEC+DGNFSSIERLRQ+P
Sbjct: 61  QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSP 120

Query: 121 LPQVAHSHVSQ 132
           LP+ AHSHVSQ
Sbjct: 121 LPRGAHSHVSQ 131

[Close]
BLAST of Cla97C05G092250 vs. TrEMBL
Match: tr|A0A1S4E5H6|A0A1S4E5H6_CUCME (pre-rRNA-processing protein TSR2 OS=Cucumis melo OX=3656 GN=LOC103503689 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 1.4e-58
Identity = 115/131 (87.79%), Postives = 122/131 (93.13%), Query Frame = 0 

Query: 1   MEGGGNCLLPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFT 60
           MEGGGN LLPADA PLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSD+ TWF 
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFA 60

Query: 61  QDKEPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQTP 120
           Q+KE LYIDDLE ILDEAMLSLNTQVDDGSIEEVAERL+ MHEEC+D NFSSIERLRQ+P
Sbjct: 61  QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP 120

Query: 121 LPQVAHSHVSQ 132
            PQVAH+HV+Q
Sbjct: 121 RPQVAHAHVNQ 131

[Close]
BLAST of Cla97C05G092250 vs. TrEMBL
Match: tr|A0A0A0LDZ8|A0A0A0LDZ8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889860 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 5.2e-53
Identity = 104/120 (86.67%), Postives = 115/120 (95.83%), Query Frame = 0 

Query: 1   MEGGGNCLLPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFT 60
           MEGGGN LLPA A PLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLC+++ TWFT
Sbjct: 1   MEGGGNRLLPAHAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCAEIFTWFT 60

Query: 61  QDKEPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQTP 120
           Q+KE LYIDDLE+ILDEAMLSL+TQVDDGSIEEVAE+L++MHEEC+DGNFSSIERLRQ+P
Sbjct: 61  QNKEQLYIDDLEIILDEAMLSLSTQVDDGSIEEVAEKLIIMHEECVDGNFSSIERLRQSP 120

[Close]
BLAST of Cla97C05G092250 vs. TrEMBL
Match: tr|A0A2I4GN57|A0A2I4GN57_9ROSI (pre-rRNA-processing protein TSR2-like OS=Juglans regia OX=51240 GN=LOC109009341 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.9e-42
Identity = 92/141 (65.25%), Postives = 108/141 (76.60%), Query Frame = 0 

Query: 1   MEGGGNCLLPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFT 60
           M+GG    L A+A P F+EGI LVLSRWSAL+LAVENEWGGRDS RK + L  D+ +WFT
Sbjct: 1   MDGGPPRALTAEALPAFREGIYLVLSRWSALRLAVENEWGGRDSHRKADQLALDIISWFT 60

Query: 61  QDKEPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQTP 120
           Q +EPLYIDDLE ILDEAMLSLNT+ +DGSIEE+A +LM MHEECL+GN  SIERLR+  
Sbjct: 61  QSREPLYIDDLENILDEAMLSLNTEAEDGSIEEIAYKLMTMHEECLEGNLQSIERLREAS 120

Query: 121 LPQVAHSHVSQVT--KIFVLN 140
              V+  HV QVT  +  VLN
Sbjct: 121 HQDVSDRHVMQVTINRALVLN 141

[Close]
BLAST of Cla97C05G092250 vs. TrEMBL
Match: tr|A0A2I4G3Y9|A0A2I4G3Y9_9ROSI (pre-rRNA-processing protein TSR2 homolog OS=Juglans regia OX=51240 GN=LOC109004476 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 3.2e-42
Identity = 86/132 (65.15%), Postives = 106/132 (80.30%), Query Frame = 0 

Query: 1   MEGGGNCLLPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFT 60
           M+GG    L  +A P+F+EG+ LVLSRWSALQ+AVENEWGGRDS RK + L SD+ +WFT
Sbjct: 1   MDGGSPRELTPEAMPIFREGVYLVLSRWSALQMAVENEWGGRDSHRKADQLASDIISWFT 60

Query: 61  QDKEPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQTP 120
           Q +EPLYIDDLE +LDEA+LSLNT+ +DGSIEE+A +LM MHEECL+GNF SIE LR+  
Sbjct: 61  QSREPLYIDDLENMLDEALLSLNTEAEDGSIEEIAYKLMTMHEECLEGNFQSIEGLREAS 120

Query: 121 LPQVAHSHVSQV 133
             +VA +HV QV
Sbjct: 121 RQEVAVNHVRQV 132

[Close]
BLAST of Cla97C05G092250 vs. TrEMBL
Match: tr|A0A2C9VFP0|A0A2C9VFP0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G120700 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 9.2e-42
Identity = 85/123 (69.11%), Postives = 102/123 (82.93%), Query Frame = 0 

Query: 9   LPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFTQDKEPLYI 68
           L A++ P+FQEGI L+LSRWSALQLAVENEWGGR SR+  + L SD+ +WFTQ KEPLYI
Sbjct: 15  LSAESLPIFQEGICLILSRWSALQLAVENEWGGRGSRQLADQLGSDIFSWFTQSKEPLYI 74

Query: 69  DDLEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQTPLPQVAHSH 128
           DDLE ILDE MLSLNT ++DGS+EEVAE+LM+MHEECL+GN++SIE+LRQ      AH H
Sbjct: 75  DDLENILDEGMLSLNTMIEDGSVEEVAEKLMIMHEECLEGNYNSIEKLRQAGPSTGAHQH 134

Query: 129 VSQ 132
           V Q
Sbjct: 135 VRQ 137

[Close]
BLAST of Cla97C05G092250 vs. Swiss-Prot
Match: sp|Q3KRG3|TSR2_DANRE (Pre-rRNA-processing protein TSR2 homolog OS=Danio rerio OX=7955 GN=tsr2 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.6e-10
Identity = 35/106 (33.02%), Postives = 60/106 (56.60%), Query Frame = 0 

Query: 9   LPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFTQDKEPLYI 68
           L +    +F E +  VL  W  LQ+AV+N +GG  S++K E +   +  +FT D   L  
Sbjct: 4   LSSSTREVFSEAVRAVLETWPVLQIAVDNGFGGAFSQQKAEWMVDALQQYFT-DNGDLQP 63

Query: 69  DDLEMILDEAMLS-LNTQVDDGSIEEVAERLMVMHEECLDGNFSSI 114
           D++E  + E M +  +T VDDGS+ +VA+++  M ++C  G  + +
Sbjct: 64  DEVEDFISELMNNEFDTVVDDGSLPQVAQQVCGMFQQCEQGRLAEV 108

[Close]
BLAST of Cla97C05G092250 vs. Swiss-Prot
Match: sp|Q969E8|TSR2_HUMAN (Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens OX=9606 GN=TSR2 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-08
Identity = 35/106 (33.02%), Postives = 62/106 (58.49%), Query Frame = 0 

Query: 12  DASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFTQDKEPLYIDDL 71
           DA  LF+ G+   L  W ALQ+AVEN +GG  S+ K + L   V  +F ++ + L +D++
Sbjct: 7   DARALFRAGVCAALEAWPALQIAVENGFGGVHSQEKAKWLGGAVEDYFMRNAD-LELDEV 66

Query: 72  EMILDEAMLS-LNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERL 117
           E  L E + +  +T V+DGS+ +V+++L  M      G+ +++  +
Sbjct: 67  EDFLGELLTNEFDTVVEDGSLPQVSQQLQTMFHHFQRGDGAALREM 111

[Close]
BLAST of Cla97C05G092250 vs. Swiss-Prot
Match: sp|Q3T090|TSR2_BOVIN (Pre-rRNA-processing protein TSR2 homolog OS=Bos taurus OX=9913 GN=TSR2 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-08
Identity = 35/106 (33.02%), Postives = 62/106 (58.49%), Query Frame = 0 

Query: 12  DASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFTQDKEPLYIDDL 71
           D+  LF   +   L  W ALQ+AVEN +GG  S+ K E L   V  +F ++ + L +D++
Sbjct: 7   DSRALFGAAVRAALEAWPALQIAVENGFGGVYSQEKAEWLGGAVEEYFFRNAD-LELDEV 66

Query: 72  EMILDEAMLS-LNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERL 117
           E  L E M++  +T V+DGS+ +V+++L  M      G+ ++++ +
Sbjct: 67  EDFLGELMMNEFDTVVEDGSLPQVSQQLQTMFHHFQKGDRAALKEM 111

[Close]
BLAST of Cla97C05G092250 vs. Swiss-Prot
Match: sp|Q3KPN2|TSR2_XENLA (Pre-rRNA-processing protein TSR2 homolog OS=Xenopus laevis OX=8355 GN=tsr2 PE=2 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 5.2e-08
Identity = 36/107 (33.64%), Postives = 59/107 (55.14%), Query Frame = 0 

Query: 12  DASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFTQ--DKEPLYID 71
           D+  LF+E    VL  W  LQ+AVEN +GG  S+ K E +   +  +F+   D E   ++
Sbjct: 7   DSRGLFREATKAVLGSWPVLQIAVENGFGGSHSQEKAEWMVGAIDQYFSSNADLEQYEVE 66

Query: 72  D--LEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIE 115
           D  + M+ DE     +T V+DGS   VA++L V+  +C  G  ++++
Sbjct: 67  DSIMGMMNDE----FDTIVEDGSQALVAQQLCVLFSQCRQGETAAVQ 109

[Close]
BLAST of Cla97C05G092250 vs. Swiss-Prot
Match: sp|Q8C8T8|TSR2_MOUSE (Pre-rRNA-processing protein TSR2 homolog OS=Mus musculus OX=10090 GN=Tsr2 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.9e-08
Identity = 34/106 (32.08%), Postives = 59/106 (55.66%), Query Frame = 0 

Query: 12  DASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFTQDKEPLYIDDL 71
           D   LF   +   L  W ALQ+AVEN +GG  S+ K E L   V  +F  + + L ++++
Sbjct: 7   DVRVLFGAAVRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEDYFIANAD-LELEEI 66

Query: 72  EMILDEAMLS-LNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERL 117
           E  L E M +  +T V+DGS+ +V+++L  M      G+ ++++ +
Sbjct: 67  EDFLGELMTTEFDTVVEDGSLPQVSQQLQTMFHHFQKGDGAALQEM 111

[Close]
BLAST of Cla97C05G092250 vs. TAIR10
Match: AT5G27990.1 (Pre-rRNA-processing protein TSR2, conserved region)

HSP 1 Score: 102.8 bits (255), Expect = 1.8e-22
Identity = 50/115 (43.48%), Postives = 76/115 (66.09%), Query Frame = 0 

Query: 6   NCLLPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFTQDKEP 65
           N  L  +A  + +EGIGL+L RW+A++ AVEN WGGRDS+ K     + V  +F Q K+P
Sbjct: 4   NATLTVEARDILKEGIGLILWRWTAMRAAVENGWGGRDSQAKANETVATVFDFFIQSKDP 63

Query: 66  LY-IDDLEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQT 120
           +  I+ L  +LD+ +  LNT  +DGS++EVA  L+ ++E+C +GN+  +E LR T
Sbjct: 64  VKDIEKLGDLLDKGLDELNTTAEDGSVDEVANLLVDLYEDCCNGNYEMLEELRAT 118

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BLAST of Cla97C05G092250 vs. TAIR10
Match: AT3G22510.1 (Pre-rRNA-processing protein TSR2, conserved region)

HSP 1 Score: 89.4 bits (220), Expect = 2.0e-18
Identity = 45/100 (45.00%), Postives = 69/100 (69.00%), Query Frame = 0 

Query: 10  PADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFTQDKEPLYID 69
           P D   + Q  IG +LSRW  LQ+AV+N+WGG DS +K + L  ++    +Q    + ++
Sbjct: 24  PMDDDSVLQRDIGELLSRWGGLQMAVKNQWGGHDSLKKSQELAHNLFHLISQ-SNVITVE 83

Query: 70  DLEMILDEA-MLSLNTQVDDGSIEEVAERLMVMHEECLDG 109
           ++E +L E+ +LS NT+++DGSIEEVAE+LM++HEE L G
Sbjct: 84  EIENLLHESLLLSFNTEIEDGSIEEVAEQLMILHEEHLRG 122

The following BLAST results are available for this feature:
BLAST of Cla97C05G092250 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023534881.17.8e-6190.91pre-rRNA-processing protein TSR2 homolog isoform X1 [Cucurbita pepo subsp. pepo]... [more]
XP_022936382.12.3e-6090.15pre-rRNA-processing protein TSR2 homolog [Cucurbita moschata][more]
XP_022975934.11.9e-5989.39pre-rRNA-processing protein TSR2 homolog [Cucurbita maxima][more]
XP_022982103.19.6e-5987.79pre-rRNA-processing protein TSR2 homolog [Cucurbita maxima][more]
XP_022940503.11.6e-5887.02pre-rRNA-processing protein TSR2 homolog [Cucurbita moschata][more]
BLAST of Cla97C05G092250 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E5H6|A0A1S4E5H6_CUCME1.4e-5887.79pre-rRNA-processing protein TSR2 OS=Cucumis melo OX=3656 GN=LOC103503689 PE=4 SV... [more]
tr|A0A0A0LDZ8|A0A0A0LDZ8_CUCSA5.2e-5386.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889860 PE=4 SV=1[more]
tr|A0A2I4GN57|A0A2I4GN57_9ROSI1.9e-4265.25pre-rRNA-processing protein TSR2-like OS=Juglans regia OX=51240 GN=LOC109009341 ... [more]
tr|A0A2I4G3Y9|A0A2I4G3Y9_9ROSI3.2e-4265.15pre-rRNA-processing protein TSR2 homolog OS=Juglans regia OX=51240 GN=LOC1090044... [more]
tr|A0A2C9VFP0|A0A2C9VFP0_MANES9.2e-4269.11Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G120700 PE=4 SV=... [more]
BLAST of Cla97C05G092250 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q3KRG3|TSR2_DANRE9.6e-1033.02Pre-rRNA-processing protein TSR2 homolog OS=Danio rerio OX=7955 GN=tsr2 PE=2 SV=... [more]
sp|Q969E8|TSR2_HUMAN1.1e-0833.02Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens OX=9606 GN=TSR2 PE=1 SV... [more]
sp|Q3T090|TSR2_BOVIN1.8e-0833.02Pre-rRNA-processing protein TSR2 homolog OS=Bos taurus OX=9913 GN=TSR2 PE=2 SV=1[more]
sp|Q3KPN2|TSR2_XENLA5.2e-0833.64Pre-rRNA-processing protein TSR2 homolog OS=Xenopus laevis OX=8355 GN=tsr2 PE=2 ... [more]
sp|Q8C8T8|TSR2_MOUSE8.9e-0832.08Pre-rRNA-processing protein TSR2 homolog OS=Mus musculus OX=10090 GN=Tsr2 PE=1 S... [more]
BLAST of Cla97C05G092250 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G27990.11.8e-2243.48Pre-rRNA-processing protein TSR2, conserved region[more]
AT3G22510.12.0e-1845.00Pre-rRNA-processing protein TSR2, conserved region[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019398Pre-rRNA_process_TSR2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G092250.1Cla97C05G092250.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019398Pre-rRNA-processing protein TSR2PFAMPF10273WGGcoord: 17..96
e-value: 6.5E-22
score: 77.9
IPR019398Pre-rRNA-processing protein TSR2PANTHERPTHR21250UNCHARACTERIZEDcoord: 12..133

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C05G092250Cla013054Watermelon (97103) v1wmwmbB206
Cla97C05G092250ClCG05G009860Watermelon (Charleston Gray)wcgwmbB229
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C05G092250Silver-seed gourdcarwmbB0395
Cla97C05G092250Silver-seed gourdcarwmbB0396
Cla97C05G092250Silver-seed gourdcarwmbB0681
Cla97C05G092250Cucumber (Gy14) v2cgybwmbB206
Cla97C05G092250Cucurbita maxima (Rimu)cmawmbB347
Cla97C05G092250Cucurbita maxima (Rimu)cmawmbB763
Cla97C05G092250Cucurbita moschata (Rifu)cmowmbB332
Cla97C05G092250Cucurbita moschata (Rifu)cmowmbB735
Cla97C05G092250Wild cucumber (PI 183967)cpiwmbB221
Cla97C05G092250Cucumber (Chinese Long) v3cucwmbB217
Cla97C05G092250Cucumber (Chinese Long) v2cuwmbB215
Cla97C05G092250Bottle gourd (USVL1VR-Ls)lsiwmbB329
Cla97C05G092250Melon (DHL92) v3.6.1medwmbB424
Cla97C05G092250Melon (DHL92) v3.5.1mewmbB434
Cla97C05G092250Wax gourdwgowmbB179