Cla97C05G092020 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G092020
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	11S seed storage protein
Location	Cla97Chr05 : 10102473 .. 10102703 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCTATGAATCCGAAGCCTTTTGTTGAGGGAGAAGCTGGTTCATATTACAAATGGTTGCCTTCTGACTATCCCTTGCTTGCTCAGACAAAGGTCGCCGCCGGCCGCCTTCTCCTCCGCCCTCGCGGCTTCGCCCTTCCTCACTATGCTGATTGCTCTAAATTCGGCTATGTTCTTCAAGGTAACCTCTCTGCAACTCTCTATTTTCTCGTTGATATCATTTTATAA

mRNA sequence

ATGGAGGCTATGAATCCGAAGCCTTTTGTTGAGGGAGAAGCTGGTTCATATTACAAATGGTTGCCTTCTGACTATCCCTTGCTTGCTCAGACAAAGGTCGCCGCCGGCCGCCTTCTCCTCCGCCCTCGCGGCTTCGCCCTTCCTCACTATGCTGATTGCTCTAAATTCGGCTATGTTCTTCAAGGTAACCTCTCTGCAACTCTCTATTTTCTCGTTGATATCATTTTATAA

Coding sequence (CDS)

ATGGAGGCTATGAATCCGAAGCCTTTTGTTGAGGGAGAAGCTGGTTCATATTACAAATGGTTGCCTTCTGACTATCCCTTGCTTGCTCAGACAAAGGTCGCCGCCGGCCGCCTTCTCCTCCGCCCTCGCGGCTTCGCCCTTCCTCACTATGCTGATTGCTCTAAATTCGGCTATGTTCTTCAAGGTAACCTCTCTGCAACTCTCTATTTTCTCGTTGATATCATTTTATAA

Protein sequence

MEAMNPKPFVEGEAGSYYKWLPSDYPLLAQTKVAAGRLLLRPRGFALPHYADCSKFGYVLQGNLSATLYFLVDIIL

Homology

[Close]

BLAST of Cla97C05G092020 vs. NCBI nr
Match: XP_004151504.1 (PREDICTED: legumin J [Cucumis sativus] >KGN57580.1 hypothetical protein Csa_3G218160 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 5.7e-26
Identity = 56/67 (83.58%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1  MEAMNPKPFVEGEAGSYYKWLPSDYPLLAQTKVAAGRLLLRPRGFALPHYADCSKFGYVL 60
          MEAMNPKPF EGE GSY+KWLPSDYPLLAQT VA GRLLLRPRGFA+PHY+DCSKFGYVL
Sbjct: 1  MEAMNPKPFFEGEGGSYHKWLPSDYPLLAQTNVAGGRLLLRPRGFAVPHYSDCSKFGYVL 60

Query: 61 QGNLSAT 68
          QG    T
Sbjct: 61 QGEDGVT 67

[Close]

BLAST of Cla97C05G092020 vs. NCBI nr
Match: XP_008456076.1 (PREDICTED: glutelin type-A 2-like [Cucumis melo])

HSP 1 Score: 125.9 bits (315), Expect = 5.7e-26
Identity = 57/67 (85.07%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 1  MEAMNPKPFVEGEAGSYYKWLPSDYPLLAQTKVAAGRLLLRPRGFALPHYADCSKFGYVL 60
          MEAMNPKPF EGE GSY KWLPSDYPLLAQT VA GRLLLRPRGFA+PHYADCSKFGYVL
Sbjct: 1  MEAMNPKPFFEGEGGSYLKWLPSDYPLLAQTNVAGGRLLLRPRGFAVPHYADCSKFGYVL 60

Query: 61 QGNLSAT 68
          QG    T
Sbjct: 61 QGEDGVT 67

[Close]

BLAST of Cla97C05G092020 vs. NCBI nr
Match: XP_022922755.1 (legumin J-like [Cucurbita moschata])

HSP 1 Score: 115.2 bits (287), Expect = 1.0e-22
Identity = 51/61 (83.61%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 2  EAMNPKPFVEGEAGSYYKWLPSDYPLLAQTKVAAGRLLLRPRGFALPHYADCSKFGYVLQ 61
          + MNPKPF E EAGSY+KWLPS+YPLLAQ KVAAGRLLLRPRGF +PHYADCSK GYVLQ
Sbjct: 3  QPMNPKPFTEVEAGSYHKWLPSEYPLLAQNKVAAGRLLLRPRGFVVPHYADCSKVGYVLQ 62

Query: 62 G 63
          G
Sbjct: 63 G 63

[Close]

BLAST of Cla97C05G092020 vs. NCBI nr
Match: XP_023552908.1 (12S seed storage globulin 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 113.6 bits (283), Expect = 2.9e-22
Identity = 50/61 (81.97%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 2  EAMNPKPFVEGEAGSYYKWLPSDYPLLAQTKVAAGRLLLRPRGFALPHYADCSKFGYVLQ 61
          + MNPKPF E EAGSY+KWLPS+YPLLA+ KVAAGRLLLRPRGF +PHYADCSK GYVLQ
Sbjct: 3  QPMNPKPFTEVEAGSYHKWLPSEYPLLARNKVAAGRLLLRPRGFVVPHYADCSKVGYVLQ 62

Query: 62 G 63
          G
Sbjct: 63 G 63

[Close]

BLAST of Cla97C05G092020 vs. NCBI nr
Match: XP_022985328.1 (12S seed storage protein CRD-like [Cucurbita maxima])

HSP 1 Score: 113.2 bits (282), Expect = 3.8e-22
Identity = 50/61 (81.97%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 2  EAMNPKPFVEGEAGSYYKWLPSDYPLLAQTKVAAGRLLLRPRGFALPHYADCSKFGYVLQ 61
          + MNPKPF E EAGSY+KWLPS+YPLLA  KVAAGRLLLRPRGF +PHYADCSK GYVLQ
Sbjct: 3  QPMNPKPFTEVEAGSYHKWLPSEYPLLAHNKVAAGRLLLRPRGFVVPHYADCSKVGYVLQ 62

Query: 62 G 63
          G
Sbjct: 63 G 63

[Close]

BLAST of Cla97C05G092020 vs. TrEMBL
Match: tr|A0A1S3C2D5|A0A1S3C2D5_CUCME (glutelin type-A 2-like OS=Cucumis melo OX=3656 GN=LOC103496119 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.8e-26
Identity = 57/67 (85.07%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 1  MEAMNPKPFVEGEAGSYYKWLPSDYPLLAQTKVAAGRLLLRPRGFALPHYADCSKFGYVL 60
          MEAMNPKPF EGE GSY KWLPSDYPLLAQT VA GRLLLRPRGFA+PHYADCSKFGYVL
Sbjct: 1  MEAMNPKPFFEGEGGSYLKWLPSDYPLLAQTNVAGGRLLLRPRGFAVPHYADCSKFGYVL 60

Query: 61 QGNLSAT 68
          QG    T
Sbjct: 61 QGEDGVT 67

[Close]

BLAST of Cla97C05G092020 vs. TrEMBL
Match: tr|A0A0A0L6K0|A0A0A0L6K0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G218160 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.8e-26
Identity = 56/67 (83.58%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1  MEAMNPKPFVEGEAGSYYKWLPSDYPLLAQTKVAAGRLLLRPRGFALPHYADCSKFGYVL 60
          MEAMNPKPF EGE GSY+KWLPSDYPLLAQT VA GRLLLRPRGFA+PHY+DCSKFGYVL
Sbjct: 1  MEAMNPKPFFEGEGGSYHKWLPSDYPLLAQTNVAGGRLLLRPRGFAVPHYSDCSKFGYVL 60

Query: 61 QGNLSAT 68
          QG    T
Sbjct: 61 QGEDGVT 67

[Close]

BLAST of Cla97C05G092020 vs. TrEMBL
Match: tr|A0A0A0KA23|A0A0A0KA23_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G368140 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.7e-18
Identity = 45/67 (67.16%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 1  MEAMNPKPFVEGEAGSYYKWLPSDYPLLAQTKVAAGRLLLRPRGFALPHYADCSKFGYVL 60
          M+AMNP+ + +G  GSY KW PSDYPLLAQ+KV AG LLL PRGFA+ HY+D SK GYVL
Sbjct: 5  MKAMNPRKYFQGVGGSYNKWYPSDYPLLAQSKVRAGMLLLHPRGFAILHYSDASKVGYVL 64

Query: 61 QGNLSAT 68
          QGN   T
Sbjct: 65 QGNNGVT 71

[Close]

BLAST of Cla97C05G092020 vs. TrEMBL
Match: tr|A0A0A0K550|A0A0A0K550_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G337100 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-17
Identity = 44/67 (65.67%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 1  MEAMNPKPFVEGEAGSYYKWLPSDYPLLAQTKVAAGRLLLRPRGFALPHYADCSKFGYVL 60
          ++AMNP+   EG  GSY KW PSDYPLLAQ+KV AG LLL PRGFA+ HY+D SK GYVL
Sbjct: 6  LKAMNPRKHFEGVGGSYNKWYPSDYPLLAQSKVGAGMLLLHPRGFAILHYSDASKVGYVL 65

Query: 61 QGNLSAT 68
          +GN   T
Sbjct: 66 RGNNGVT 72

[Close]

BLAST of Cla97C05G092020 vs. TrEMBL
Match: tr|A0A061E708|A0A061E708_THECC (RmlC-like cupins superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_006913 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.2e-17
Identity = 41/68 (60.29%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 6  PKPFVEGEAGSYYKWLPSDYPLLAQTKVAAGRLLLRPRGFALPHYADCSKFGYVLQGNLS 65
          P+ F EGE G YY W  +D P+L + KVAAG+L+L+PRGFALPHYADCSK GYVL+GN  
Sbjct: 10 PRTFAEGEGGGYYNWASADSPVLREAKVAAGKLVLKPRGFALPHYADCSKVGYVLEGNCG 69

Query: 66 ATLYFLVD 74
            L    D
Sbjct: 70 VGLTLAAD 77

[Close]

BLAST of Cla97C05G092020 vs. TAIR10
Match: AT1G07750.1 (RmlC-like cupins superfamily protein)

HSP 1 Score: 64.3 bits (155), Expect = 3.7e-11
Identity = 28/61 (45.90%), Postives = 37/61 (60.66%), Query Frame = 0


Query: 6  PKPFVEGEAGSYYKWLPSDYPLLAQTKVAAGRLLLRPRGFALPHYADCSKFGYVLQGNLS 65
          PK    G+ GSY  W P + P+L Q  + A +L L   GFA+P Y+D SK  YVLQG+ +
Sbjct: 10 PKKVYGGDGGSYSAWCPEELPMLKQGNIGAAKLALEKNGFAVPRYSDSSKVAYVLQGSGT 69

Query: 66 A 67
          A
Sbjct: 70 A 70

[Close]

BLAST of Cla97C05G092020 vs. TAIR10
Match: AT2G28680.1 (RmlC-like cupins superfamily protein)

HSP 1 Score: 59.3 bits (142), Expect = 1.2e-09
Identity = 25/57 (43.86%), Postives = 32/57 (56.14%), Query Frame = 0


Query: 6  PKPFVEGEAGSYYKWLPSDYPLLAQTKVAAGRLLLRPRGFALPHYADCSKFGYVLQG 63
          PK    G+ GSY+ W P + P+L    + A +L L   G ALP Y+D  K  YVLQG
Sbjct: 10 PKKVYGGDGGSYFAWCPEELPMLRDGNIGASKLALEKYGLALPRYSDSPKVAYVLQG 66

The following BLAST results are available for this feature:

BLAST of Cla97C05G092020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151504.1	5.7e-26	83.58	PREDICTED: legumin J [Cucumis sativus] >KGN57580.1 hypothetical protein Csa_3G21...	[more]
XP_008456076.1	5.7e-26	85.07	PREDICTED: glutelin type-A 2-like [Cucumis melo]	[more]
XP_022922755.1	1.0e-22	83.61	legumin J-like [Cucurbita moschata]	[more]
XP_023552908.1	2.9e-22	81.97	12S seed storage globulin 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022985328.1	3.8e-22	81.97	12S seed storage protein CRD-like [Cucurbita maxima]	[more]

BLAST of Cla97C05G092020 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C2D5\|A0A1S3C2D5_CUCME	3.8e-26	85.07	glutelin type-A 2-like OS=Cucumis melo OX=3656 GN=LOC103496119 PE=4 SV=1	[more]
tr\|A0A0A0L6K0\|A0A0A0L6K0_CUCSA	3.8e-26	83.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G218160 PE=4 SV=1	[more]
tr\|A0A0A0KA23\|A0A0A0KA23_CUCSA	1.7e-18	67.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G368140 PE=4 SV=1	[more]
tr\|A0A0A0K550\|A0A0A0K550_CUCSA	1.1e-17	65.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G337100 PE=4 SV=1	[more]
tr\|A0A061E708\|A0A061E708_THECC	4.2e-17	60.29	RmlC-like cupins superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_006913 PE...	[more]

BLAST of Cla97C05G092020 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C05G092020 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07750.1	3.7e-11	45.90	RmlC-like cupins superfamily protein	[more]
AT2G28680.1	1.2e-09	43.86	RmlC-like cupins superfamily protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0045735	nutrient reservoir activity

Vocabulary: **INTERPRO**
Term	Definition
IPR011051	RmlC_Cupin_sf
IPR014710	RmlC-like_jellyroll
IPR006045	Cupin_1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0045735	nutrient reservoir activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G092020.1	Cla97C05G092020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006045	Cupin 1	PFAM	PF00190	Cupin_1	coord: 3..67 e-value: 1.7E-8 score: 34.1
IPR014710	RmlC-like jelly roll fold	GENE3D	G3DSA:2.60.120.10		coord: 1..72 e-value: 1.2E-12 score: 49.5
None	No IPR available	PANTHER	PTHR31189	FAMILY NOT NAMED	coord: 9..63
None	No IPR available	PANTHER	PTHR31189:SF0	SUBFAMILY NOT NAMED	coord: 9..63
IPR011051	RmlC-like cupin domain superfamily	SUPERFAMILY	SSF51182	RmlC-like cupins	coord: 3..69

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G092020	Lsi05G001790	Bottle gourd (USVL1VR-Ls)	lsiwmbB329
Cla97C05G092020	Bhi01G001213	Wax gourd	wgowmbB179

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G092020	Silver-seed gourd	carwmbB0062
Cla97C05G092020	Silver-seed gourd	carwmbB0681
Cla97C05G092020	Cucumber (Gy14) v2	cgybwmbB206
Cla97C05G092020	Cucumber (Gy14) v1	cgywmbB003
Cla97C05G092020	Cucurbita maxima (Rimu)	cmawmbB347
Cla97C05G092020	Cucurbita maxima (Rimu)	cmawmbB763
Cla97C05G092020	Cucurbita moschata (Rifu)	cmowmbB332
Cla97C05G092020	Cucurbita moschata (Rifu)	cmowmbB735
Cla97C05G092020	Wild cucumber (PI 183967)	cpiwmbB221
Cla97C05G092020	Cucumber (Chinese Long) v3	cucwmbB217
Cla97C05G092020	Cucumber (Chinese Long) v2	cuwmbB215
Cla97C05G092020	Melon (DHL92) v3.6.1	medwmbB424
Cla97C05G092020	Melon (DHL92) v3.5.1	mewmbB434
Cla97C05G092020	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G092020	Watermelon (97103) v1	wmwmbB206