Cla97C05G091720 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G091720
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Leucine-rich repeat receptor-like protein kinase family protein
Location	Cla97Chr05 : 9654307 .. 9654702 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTTGAAAGGTCAAGAGAGACTCATCACAGGAGAAGTATTCAGACTTGAAAGAAGTATTGATCTATCCTGCAATCATTTGACTGGGAAAATTCCTGAGGAAATCACCGAGCTTGTTGATTTGATTACTTTGAATCTGTCCAGCAATGAATTAAGAGGTCCAATTCCTGGTAACATGGGCCAACTTCAATCATTGGAGTCTCTGGATCTATCAAGAAATCGGCTATACGGTCCAATTCCAACTACTCTTTCTGAAATATCAAGGCTGGCAGCATTGAATTTGTCGTACAACAACCTTTCAGGAAAAATTCCCACAAGCACACAACTTCAAAGCTTCCCAAATTCTTCTTATGAAGGCAACCCTTATCATAAACCAACAATGGAAAAGCATTAA

mRNA sequence

ATGGTGTTGAAAGGTCAAGAGAGACTCATCACAGGAGAAGTATTCAGACTTGAAAGAAGTATTGATCTATCCTGCAATCATTTGACTGGGAAAATTCCTGAGGAAATCACCGAGCTTGTTGATTTGATTACTTTGAATCTGTCCAGCAATGAATTAAGAGGTCCAATTCCTGGTAACATGGGCCAACTTCAATCATTGGAGTCTCTGGATCTATCAAGAAATCGGCTATACGGTCCAATTCCAACTACTCTTTCTGAAATATCAAGGCTGGCAGCATTGAATTTGTCGTACAACAACCTTTCAGGAAAAATTCCCACAAGCACACAACTTCAAAGCTTCCCAAATTCTTCTTATGAAGGCAACCCTTATCATAAACCAACAATGGAAAAGCATTAA

Coding sequence (CDS)

ATGGTGTTGAAAGGTCAAGAGAGACTCATCACAGGAGAAGTATTCAGACTTGAAAGAAGTATTGATCTATCCTGCAATCATTTGACTGGGAAAATTCCTGAGGAAATCACCGAGCTTGTTGATTTGATTACTTTGAATCTGTCCAGCAATGAATTAAGAGGTCCAATTCCTGGTAACATGGGCCAACTTCAATCATTGGAGTCTCTGGATCTATCAAGAAATCGGCTATACGGTCCAATTCCAACTACTCTTTCTGAAATATCAAGGCTGGCAGCATTGAATTTGTCGTACAACAACCTTTCAGGAAAAATTCCCACAAGCACACAACTTCAAAGCTTCCCAAATTCTTCTTATGAAGGCAACCCTTATCATAAACCAACAATGGAAAAGCATTAA

Protein sequence

MVLKGQERLITGEVFRLERSIDLSCNHLTGKIPEEITELVDLITLNLSSNELRGPIPGNMGQLQSLESLDLSRNRLYGPIPTTLSEISRLAALNLSYNNLSGKIPTSTQLQSFPNSSYEGNPYHKPTMEKH

Homology

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BLAST of Cla97C05G091720 vs. NCBI nr
Match: XP_022136554.1 (LRR receptor-like serine/threonine-protein kinase ERECTA [Momordica charantia])

HSP 1 Score: 68.9 bits (167), Expect = 1.4e-08
Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 1   MVLKGQERLITGEVFRLERSIDLSCNHLTGKIPEEITELVDLI 44
           M+ KG+ERLIT E  +LERSIDLSCNHL+GKIP EITELV LI
Sbjct: 144 MMWKGEERLITKETMKLERSIDLSCNHLSGKIPNEITELVGLI 186

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BLAST of Cla97C05G091720 vs. NCBI nr
Match: XP_022136957.1 (receptor-like protein 12 [Momordica charantia])

HSP 1 Score: 64.3 bits (155), Expect = 3.5e-07
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 1   MVLKGQERLITGEVFRLERSIDLSCNHLTGKIPEEITELVDLI 44
           MV KG ER ITG+V  L RSIDLSCNHL+GKIP EIT+LV+LI
Sbjct: 786 MVWKGGERHITGQVMDLVRSIDLSCNHLSGKIPYEITQLVELI 828

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BLAST of Cla97C05G091720 vs. NCBI nr
Match: XP_011651289.1 (PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 5.1e-06
Identity = 104/123 (84.55%), Postives = 111/123 (90.24%), Query Frame = 0


Query: 1   MVLKGQERLITGEVFRLERSIDLSCNHLTGKIPEEITELVDLITXXXXXXXXXXXXXXXX 60
           M+ KG+E LI G   +L+RSIDLSCN LTG+IP +ITELV L+ XXXXXXXXXXXXXXXX
Sbjct: 251 MMWKGKETLIHGRNLQLQRSIDLSCNRLTGEIPNKITELVGLVVXXXXXXXXXXXXXXXX 310

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLQSFPNSSYEG 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX QLQSFP SSYEG
Sbjct: 311 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQLQSFPVSSYEG 370

Query: 121 NPY 124
           NPY
Sbjct: 371 NPY 373

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BLAST of Cla97C05G091720 vs. NCBI nr
Match: KGN57618.1 (hypothetical protein Csa_3G229430 [Cucumis sativus])

HSP 1 Score: 57.0 bits (136), Expect = 5.6e-05
Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 1   MVLKGQERLITGEVFRLERSIDLSCNHLTGKIPEEITELVDLI 44
           M+ KG+E LI G   +L+RSIDLSCN LTG+IP +ITELV L+
Sbjct: 449 MMWKGKETLIHGRNLQLQRSIDLSCNRLTGEIPNKITELVGLV 491

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BLAST of Cla97C05G091720 vs. NCBI nr
Match: XP_022942009.1 (protein BRASSINOSTEROID INSENSITIVE 1-like [Cucurbita moschata])

HSP 1 Score: 56.2 bits (134), Expect = 9.5e-05
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 1   MVLKGQERLITGEVFRLERSIDLSCNHLTGKIPEEITELVDLIT 45
           ++ KGQERL+ G    ++R IDLS NHLTG+IP EIT+LV L++
Sbjct: 682 LMWKGQERLVHGHNLEIQRGIDLSSNHLTGEIPNEITKLVGLVS 725

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BLAST of Cla97C05G091720 vs. TrEMBL
Match: tr|A0A0A0L777|A0A0A0L777_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G229430 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.7e-05
Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 1   MVLKGQERLITGEVFRLERSIDLSCNHLTGKIPEEITELVDLI 44
           M+ KG+E LI G   +L+RSIDLSCN LTG+IP +ITELV L+
Sbjct: 449 MMWKGKETLIHGRNLQLQRSIDLSCNRLTGEIPNKITELVGLV 491

The following BLAST results are available for this feature:

BLAST of Cla97C05G091720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136554.1	1.4e-08	76.74	LRR receptor-like serine/threonine-protein kinase ERECTA [Momordica charantia]	[more]
XP_022136957.1	3.5e-07	74.42	receptor-like protein 12 [Momordica charantia]	[more]
XP_011651289.1	5.1e-06	84.55	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 ...	[more]
KGN57618.1	5.6e-05	62.79	hypothetical protein Csa_3G229430 [Cucumis sativus]	[more]
XP_022942009.1	9.5e-05	56.82	protein BRASSINOSTEROID INSENSITIVE 1-like [Cucurbita moschata]	[more]

BLAST of Cla97C05G091720 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L777\|A0A0A0L777_CUCSA	3.7e-05	62.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G229430 PE=4 SV=1	[more]

BLAST of Cla97C05G091720 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C05G091720 vs. TAIR10


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	LRR_dom_sf
IPR001611	Leu-rich_rpt

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G091720.1	Cla97C05G091720.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00019	LEURICHRPT	coord: 63..76 score: 56.81 coord: 42..55 score: 46.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..122
None	No IPR available	PANTHER	PTHR27004	FAMILY NOT NAMED	coord: 1..123
None	No IPR available	SUPERFAMILY	SSF52058	L domain-like	coord: 19..124
IPR001611	Leucine-rich repeat	PFAM	PF13855	LRR_8	coord: 19..76 e-value: 1.2E-9 score: 37.7
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	G3DSA:3.80.10.10		coord: 3..125 e-value: 4.4E-43 score: 149.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G091720	Cla004299	Watermelon (97103) v1	wmwmbB206
Cla97C05G091720	MELO3C019414	Melon (DHL92) v3.5.1	mewmbB434
Cla97C05G091720	ClCG05G009360	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G091720	MELO3C019414.2	Melon (DHL92) v3.6.1	medwmbB424
Cla97C05G091720	Bhi01G001173	Wax gourd	wgowmbB179

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G091720	Silver-seed gourd	carwmbB0042
Cla97C05G091720	Silver-seed gourd	carwmbB0681
Cla97C05G091720	Cucumber (Gy14) v2	cgybwmbB206
Cla97C05G091720	Cucumber (Gy14) v1	cgywmbB003
Cla97C05G091720	Cucurbita maxima (Rimu)	cmawmbB347
Cla97C05G091720	Cucurbita maxima (Rimu)	cmawmbB763
Cla97C05G091720	Cucurbita moschata (Rifu)	cmowmbB332
Cla97C05G091720	Cucurbita moschata (Rifu)	cmowmbB735
Cla97C05G091720	Wild cucumber (PI 183967)	cpiwmbB221
Cla97C05G091720	Cucumber (Chinese Long) v3	cucwmbB217
Cla97C05G091720	Cucumber (Chinese Long) v2	cuwmbB215
Cla97C05G091720	Bottle gourd (USVL1VR-Ls)	lsiwmbB329