Cla97C05G090390 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G090390
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Proline-tRNA ligase
Location	Cla97Chr05 : 8524728 .. 8526310 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCATGGAGATGATGGAGGTTTAATGCTTCCACCAAAGCTTGCTCCAACACAGGTATTGATATGAATTTACAATTTGTAATATGAACAGTATTTCTATCTGTTGAATATTCAGCATATATTGACTAGTTAGCTGCCAATAGAAATTCATGTGGACTTCTTTTTTTTTTATTTTATTTATCTATATATATATATATATATATATATATATATATATATATATATATATATATATGATTTCGGTATCTGTTATGGGTATTTTCACAACTTGGAATCTAGTTTGCGGAAAAGAAAATATTTCCGCAGTGTAGGTTGGTTGGCTGGCATTTTTATTTAAGGATGTATATATTGATCATTGATAGTTTTGAATGTTAAATCCCCTTTTTAGCAAAATGATTTTCGCTTAGATATTTTCTTCCTCCCTCTTTGCATTTGTTGCTATTAACTTGAAATCAAATATATGTAACTAGGGTTTGATTGTAGGGTGTTCCTTTGAGGATTGAGATTGGGCCTAAGGATGTTGCAAGTCAAAGTGTGGGCATATCTAGGAGAGACTTTCCTGCAAAGCAAGGGAAAGTTTTTTTGAATATCCACGGAACCTTCTGTTTTAGAAGCTTATGTACAAGAGACATTGGATGAGATCCTGTCATCTCATCTTCACCAGGCAAAAACTTTTCGGGACAGGTACTTCCTTATTTTCTTATGTTAGGGATGTTATTTAATAAATATGTGAATCTACATTTGGGTACATTACATTTATTATTTTAGAATTGAAGCAATTGAATGTTGAATAGCACACTTCTTGCAAATTATAGTGCAGTTTTAGATTCTCTGCAATTAGAATGTATTTGTAATTAGAATGTATTTGTAAATACATTCTGTTGAATTGTGAGCTTGAAGAAAATTGTTCCTATCTTCACCCTCATTTTCTTCCTGTCCCCGCACCTTTGCTTACCCCATCGAGTTTATTTTCCCTCTCTCTCTTTACCAGATTCATGCACAAAAACATTCTCTAAATGTTTCATTATATCCTTAAAGGAAAGAAAGGATGGGAATGACTGGTGTGCTTCCCAGTTCTCATTTCATCAGTTTCCGTGGTAGTGATATTCTTGATCAAATTTTGAAGTTGTAAATAGTGTCTTAGTGTGCATTCTGTGCATTTTTTTTCATTTAAAAGAAATAAAAATAGTGGTTAGTCTGACAGTATGGTTAAATTTGTCTAACACTGGATCAGTTCTAAAGCTGATGTGGGACTGAACTATTTTTTAACACTCTTGATAATGATTTTATCTTAAAATATGAAAATCCTGCTAGGGGTCCTTGGTCAGCTAGATAGGCTTAATTTCATTTATTGGGATTTGTTTATAAGTCTTCGATTTTTATGTAGCCCATTGGTCAGCGAGGTTGGCTTAATTTTATTTATTAGGATTTGTTTAAAGTCTTTGATTTAAATGTTTGCGCGTAATTGTTTGCATCTGTATGCTCTTGGACATTTTCAGTGACAAAGATGAATTGAGAGTTAAAGAAGAAACGGAAGCAACATTAGGTGCTTTACGGAACAAGAGGCTAAAACATGTCTGA

mRNA sequence

ATGACTCATGGAGATGATGGAGGTTTAATGCTTCCACCAAAGCTTGCTCCAACACAGGGTGTTCCTTTGAGGATTGAGATTGGGCCTAAGGATGTTGCAAGTCAAAAAGCTTATGTACAAGAGACATTGGATGAGATCCTGTCATCTCATCTTCACCAGGCAAAAACTTTTCGGGACAGTGACAAAGATGAATTGAGAGTTAAAGAAGAAACGGAAGCAACATTAGGTGCTTTACGGAACAAGAGGCTAAAACATGTCTGA

Coding sequence (CDS)

ATGACTCATGGAGATGATGGAGGTTTAATGCTTCCACCAAAGCTTGCTCCAACACAGGGTGTTCCTTTGAGGATTGAGATTGGGCCTAAGGATGTTGCAAGTCAAAAAGCTTATGTACAAGAGACATTGGATGAGATCCTGTCATCTCATCTTCACCAGGCAAAAACTTTTCGGGACAGTGACAAAGATGAATTGAGAGTTAAAGAAGAAACGGAAGCAACATTAGGTGCTTTACGGAACAAGAGGCTAAAACATGTCTGA

Protein sequence

MTHGDDGGLMLPPKLAPTQGVPLRIEIGPKDVASQKAYVQETLDEILSSHLHQAKTFRDSDKDELRVKEETEATLGALRNKRLKHV

Homology

[Close]

BLAST of Cla97C05G090390 vs. NCBI nr
Match: XP_008456101.1 (PREDICTED: proline--tRNA ligase, chloroplastic/mitochondrial, partial [Cucumis melo])

HSP 1 Score: 74.3 bits (181), Expect = 2.2e-10
Identity = 64/183 (34.97%), Postives = 70/183 (38.25%), Query Frame = 0


Query: 1   MTHGDDGGLMLPPKLAPTQ----------------------------------------- 60
           MTHGDDGGLMLPPKLAP Q                                         
Sbjct: 331 MTHGDDGGLMLPPKLAPIQVVIIPIWKKDGDKAEVLNAASSVKEFLQTAGLKVKLDESDQ 390

Query: 61  -------------GVPLRIEIGPKDVASQ--------------------------KAYVQ 76
                        GVPLRIEIGPKDVAS+                          +AYV+
Sbjct: 391 KTAGWKFNFWEMKGVPLRIEIGPKDVASKSVVISRRDIPGKQGKVFGISMEPSVLEAYVK 450

[Close]

BLAST of Cla97C05G090390 vs. NCBI nr
Match: XP_022945172.1 (proline--tRNA ligase, chloroplastic/mitochondrial [Cucurbita moschata])

HSP 1 Score: 73.9 bits (180), Expect = 2.9e-10
Identity = 63/183 (34.43%), Postives = 70/183 (38.25%), Query Frame = 0


Query: 1   MTHGDDGGLMLPPKLAPTQ----------------------------------------- 60
           MTHGDDGGLMLPP+LAP Q                                         
Sbjct: 335 MTHGDDGGLMLPPRLAPIQVVIVPIWKKEGVKAEVLNAAASVEVNLRTAGIKVKLDDSEQ 394

Query: 61  -------------GVPLRIEIGPKDVASQ--------------------------KAYVQ 76
                        GVPLRIEIGPKDVA+Q                          +AYV+
Sbjct: 395 RTPGWKFNFWEMKGVPLRIEIGPKDVANQSVVISRRDIPGKQGKVFGISMEPSILEAYVK 454

[Close]

BLAST of Cla97C05G090390 vs. NCBI nr
Match: XP_022968367.1 (proline--tRNA ligase, chloroplastic/mitochondrial [Cucurbita maxima])

HSP 1 Score: 73.9 bits (180), Expect = 2.9e-10
Identity = 63/183 (34.43%), Postives = 70/183 (38.25%), Query Frame = 0


Query: 1   MTHGDDGGLMLPPKLAPTQ----------------------------------------- 60
           MTHGDDGGLMLPP+LAP Q                                         
Sbjct: 335 MTHGDDGGLMLPPRLAPIQVVIIPIWKKEGVKAEVLNAAASVEVNLRTAGIKVKLDNSEQ 394

Query: 61  -------------GVPLRIEIGPKDVASQ--------------------------KAYVQ 76
                        GVPLRIEIGPKDVA+Q                          +AYV+
Sbjct: 395 RTPGWKFNFWEMKGVPLRIEIGPKDVANQSVVISRRDIPGKQGKVFGISMEPSILEAYVK 454

[Close]

BLAST of Cla97C05G090390 vs. NCBI nr
Match: XP_023541480.1 (proline--tRNA ligase, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 73.9 bits (180), Expect = 2.9e-10
Identity = 63/183 (34.43%), Postives = 70/183 (38.25%), Query Frame = 0


Query: 1   MTHGDDGGLMLPPKLAPTQ----------------------------------------- 60
           MTHGDDGGLMLPP+LAP Q                                         
Sbjct: 335 MTHGDDGGLMLPPRLAPIQVVIIPIWKKEGVKAEVLNAAASVEVNLRTAGIKVKLDNSEQ 394

Query: 61  -------------GVPLRIEIGPKDVASQ--------------------------KAYVQ 76
                        GVPLRIEIGPKDVA+Q                          +AYV+
Sbjct: 395 RTPGWKFNFWEMKGVPLRIEIGPKDVANQSVVISRRDIPGKQGKVFGISMEPSILEAYVK 454

[Close]

BLAST of Cla97C05G090390 vs. NCBI nr
Match: XP_022136703.1 (proline--tRNA ligase, chloroplastic/mitochondrial [Momordica charantia])

HSP 1 Score: 73.6 bits (179), Expect = 3.8e-10
Identity = 63/183 (34.43%), Postives = 70/183 (38.25%), Query Frame = 0


Query: 1   MTHGDDGGLMLPPKLAPTQ----------------------------------------- 60
           MTHGDDGGLMLPPKLAP Q                                         
Sbjct: 339 MTHGDDGGLMLPPKLAPIQVVIIPIWKKDDDRAEVLSASSSVKESLQTAGIKVKLDDSDQ 398

Query: 61  -------------GVPLRIEIGPKDVASQ--------------------------KAYVQ 76
                        GVPLRIEIGP+DV+S+                          +AYV+
Sbjct: 399 RTPGWKFNFWEMKGVPLRIEIGPRDVSSRSVVISRRDIPGKQGKVFGISMEPSILEAYVK 458

[Close]

BLAST of Cla97C05G090390 vs. TrEMBL
Match: tr|A0A1S3C2J3|A0A1S3C2J3_CUCME (proline--tRNA ligase, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103496137 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-10
Identity = 64/183 (34.97%), Postives = 70/183 (38.25%), Query Frame = 0


Query: 1   MTHGDDGGLMLPPKLAPTQ----------------------------------------- 60
           MTHGDDGGLMLPPKLAP Q                                         
Sbjct: 331 MTHGDDGGLMLPPKLAPIQVVIIPIWKKDGDKAEVLNAASSVKEFLQTAGLKVKLDESDQ 390

Query: 61  -------------GVPLRIEIGPKDVASQ--------------------------KAYVQ 76
                        GVPLRIEIGPKDVAS+                          +AYV+
Sbjct: 391 KTAGWKFNFWEMKGVPLRIEIGPKDVASKSVVISRRDIPGKQGKVFGISMEPSVLEAYVK 450

[Close]

BLAST of Cla97C05G090390 vs. TrEMBL
Match: tr|A0A2H3WZ83|A0A2H3WZ83_PHODC (proline--tRNA ligase, chloroplastic/mitochondrial isoform X2 OS=Phoenix dactylifera OX=42345 GN=LOC103696183 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.3e-10
Identity = 40/101 (39.60%), Postives = 60/101 (59.41%), Query Frame = 0


Query: 1   MTHGDDGGLMLPPKLAPTQGVPLRIEIGPKDVASQ------------------------- 60
           MTHGDD GLMLPP++AP QGVPLRIE+GP+DVA++                         
Sbjct: 342 MTHGDDAGLMLPPRIAPIQGVPLRIEVGPRDVANRSVVVSRRDIPGKPGKDFGVSMEPSK 401

Query: 61  -KAYVQETLDEILSSHLHQAKTFRDSDKDELRVKEETEATL 76
            +++V+  L++I +S L +A +FRDS+  ++   EE +A +
Sbjct: 402 LESHVKSRLEDIQASLLQRAISFRDSNIVDVHSYEELKAVI 442

[Close]

BLAST of Cla97C05G090390 vs. TrEMBL
Match: tr|A0A0A0L6I6|A0A0A0L6I6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G213510 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 9.5e-10
Identity = 63/182 (34.62%), Postives = 68/182 (37.36%), Query Frame = 0


Query: 1   MTHGDDGGLMLPPKLAPTQ----------------------------------------- 60
           MTHGDDGGLMLPPKLAP Q                                         
Sbjct: 342 MTHGDDGGLMLPPKLAPIQVVIIPIWKKDGDKAEVLNAASSVKEFLQTAGLKVKLDESDQ 401

Query: 61  -------------GVPLRIEIGPKDVASQ--------------------------KAYVQ 75
                        GVPLRIEIGPKDVAS+                          +AYV+
Sbjct: 402 KTAGWKFNFWEMKGVPLRIEIGPKDVASKSVVISRRDIPGKQGKVFGISMEPSVLEAYVK 461

[Close]

BLAST of Cla97C05G090390 vs. TrEMBL
Match: tr|A0A059DJT7|A0A059DJT7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A02753 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.4e-07
Identity = 58/183 (31.69%), Postives = 66/183 (36.07%), Query Frame = 0


Query: 1   MTHGDDGGLMLPPKLAPTQ----------------------------------------- 60
           MTHGDD GLMLPP+LAP Q                                         
Sbjct: 335 MTHGDDAGLMLPPRLAPVQVIVILIYKKADEKSGVISAASSVKDALQSAGVKVKLDDSEQ 394

Query: 61  -------------GVPLRIEIGPKDVAS--------------------------QKAYVQ 76
                        GVPLRIEIGP+DVAS                           +AYV+
Sbjct: 395 RTPGWKFNFWEMKGVPLRIEIGPRDVASGSVVVSRRDIPGKEGKVFGISMEPAVLEAYVK 454

[Close]

BLAST of Cla97C05G090390 vs. TrEMBL
Match: tr|A0A2P6P843|A0A2P6P843_ROSCH (Putative proline--tRNA ligase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0202211 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.4e-07
Identity = 57/183 (31.15%), Postives = 67/183 (36.61%), Query Frame = 0


Query: 1   MTHGDDGGLMLPPKLAPTQ----------------------------------------- 60
           MTHGDD GLMLPPK+AP Q                                         
Sbjct: 331 MTHGDDTGLMLPPKIAPIQVVIVPIWKKEDDKAGVLNVASSVKDALHTAGIKVKLDDTDQ 390

Query: 61  -------------GVPLRIEIGPKDVASQ--------------------------KAYVQ 76
                        GVPLRIEIGP+DV+SQ                          +AY++
Sbjct: 391 RTPGWKFNFWEMKGVPLRIEIGPRDVSSQSVVVCRRDVPGKQGKVFGISMEPSILEAYIK 450

[Close]

BLAST of Cla97C05G090390 vs. Swiss-Prot
Match: sp|Q9FYR6|SYPM_ARATH (Proline--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=OVA6 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.7e-07
Identity = 54/183 (29.51%), Postives = 63/183 (34.43%), Query Frame = 0


Query: 1   MTHGDDGGLMLPPKLAPTQ----------------------------------------- 60
           MTHGDD GLMLPPK+AP Q                                         
Sbjct: 330 MTHGDDTGLMLPPKIAPIQVVIVPIWKKDTEKTGVLSAASSVKEALQTAGVRVKLDDTDQ 389

Query: 61  -------------GVPLRIEIGPKDVASQK--------------------------AYVQ 76
                        G+PLRIEIGP+DV+S                            AYV+
Sbjct: 390 RTPGWKFNFWEMKGIPLRIEIGPRDVSSNSVVVSRRDVPGKAGKVFGISMEPSTLVAYVK 449

[Close]

BLAST of Cla97C05G090390 vs. TAIR10
Match: AT5G52520.1 (Class II aaRS and biotin synthetases superfamily protein)

HSP 1 Score: 55.8 bits (133), Expect = 1.5e-08
Identity = 54/183 (29.51%), Postives = 63/183 (34.43%), Query Frame = 0


Query: 1   MTHGDDGGLMLPPKLAPTQ----------------------------------------- 60
           MTHGDD GLMLPPK+AP Q                                         
Sbjct: 330 MTHGDDTGLMLPPKIAPIQVVIVPIWKKDTEKTGVLSAASSVKEALQTAGVRVKLDDTDQ 389

Query: 61  -------------GVPLRIEIGPKDVASQK--------------------------AYVQ 76
                        G+PLRIEIGP+DV+S                            AYV+
Sbjct: 390 RTPGWKFNFWEMKGIPLRIEIGPRDVSSNSVVVSRRDVPGKAGKVFGISMEPSTLVAYVK 449

The following BLAST results are available for this feature:

BLAST of Cla97C05G090390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456101.1	2.2e-10	34.97	PREDICTED: proline--tRNA ligase, chloroplastic/mitochondrial, partial [Cucumis m...	[more]
XP_022945172.1	2.9e-10	34.43	proline--tRNA ligase, chloroplastic/mitochondrial [Cucurbita moschata]	[more]
XP_022968367.1	2.9e-10	34.43	proline--tRNA ligase, chloroplastic/mitochondrial [Cucurbita maxima]	[more]
XP_023541480.1	2.9e-10	34.43	proline--tRNA ligase, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo]	[more]
XP_022136703.1	3.8e-10	34.43	proline--tRNA ligase, chloroplastic/mitochondrial [Momordica charantia]	[more]

BLAST of Cla97C05G090390 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C2J3\|A0A1S3C2J3_CUCME	1.5e-10	34.97	proline--tRNA ligase, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A2H3WZ83\|A0A2H3WZ83_PHODC	7.3e-10	39.60	proline--tRNA ligase, chloroplastic/mitochondrial isoform X2 OS=Phoenix dactylif...	[more]
tr\|A0A0A0L6I6\|A0A0A0L6I6_CUCSA	9.5e-10	34.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G213510 PE=3 SV=1	[more]
tr\|A0A059DJT7\|A0A059DJT7_EUCGR	4.4e-07	31.69	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A02753 PE=3 SV...	[more]
tr\|A0A2P6P843\|A0A2P6P843_ROSCH	4.4e-07	31.15	Putative proline--tRNA ligase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g020221...	[more]

BLAST of Cla97C05G090390 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FYR6\|SYPM_ARATH	2.7e-07	29.51	Proline--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=370...	[more]

BLAST of Cla97C05G090390 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52520.1	1.5e-08	29.51	Class II aaRS and biotin synthetases superfamily protein	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006433	prolyl-tRNA aminoacylation
biological_process	GO:0006418	tRNA aminoacylation for protein translation
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0004812	aminoacyl-tRNA ligase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0004827	proline-tRNA ligase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G090390.1	Cla97C05G090390.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G090390	Wax gourd	wgowmbB085
Cla97C05G090390	Watermelon (97103) v2	wmbwmbB130
Cla97C05G090390	Silver-seed gourd	carwmbB0743
Cla97C05G090390	Silver-seed gourd	carwmbB0772
Cla97C05G090390	Silver-seed gourd	carwmbB1042
Cla97C05G090390	Cucumber (Gy14) v2	cgybwmbB196
Cla97C05G090390	Cucumber (Gy14) v1	cgywmbB147
Cla97C05G090390	Cucurbita maxima (Rimu)	cmawmbB346
Cla97C05G090390	Cucurbita maxima (Rimu)	cmawmbB424
Cla97C05G090390	Cucurbita maxima (Rimu)	cmawmbB649
Cla97C05G090390	Cucurbita moschata (Rifu)	cmowmbB331
Cla97C05G090390	Cucurbita moschata (Rifu)	cmowmbB404
Cla97C05G090390	Cucurbita moschata (Rifu)	cmowmbB621
Cla97C05G090390	Cucurbita moschata (Rifu)	cmowmbB744
Cla97C05G090390	Wild cucumber (PI 183967)	cpiwmbB209
Cla97C05G090390	Cucumber (Chinese Long) v3	cucwmbB206
Cla97C05G090390	Cucumber (Chinese Long) v2	cuwmbB204
Cla97C05G090390	Bottle gourd (USVL1VR-Ls)	lsiwmbB334
Cla97C05G090390	Melon (DHL92) v3.6.1	medwmbB423
Cla97C05G090390	Melon (DHL92) v3.6.1	medwmbB433
Cla97C05G090390	Melon (DHL92) v3.5.1	mewmbB434
Cla97C05G090390	Melon (DHL92) v3.5.1	mewmbB436
Cla97C05G090390	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G090390	Watermelon (97103) v1	wmwmbB206