Cla97C05G090010 (gene) Watermelon (97103) v2

Overview
NameCla97C05G090010
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionPentatricopeptide repeat-containing protein, putative
LocationCla97Chr05 : 8201806 .. 8203236 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCGAAAGATCTTCAAAAGAGGTAACCCTAACCTACAAAAAGTTGTAAGAAATTATTATGGTTTGTTTTATTTTAATAGCTATAGAAGACGATCTGTTGCACAACAGCAGTTGTAAATGATGAATGGCCATGAACTTGGAGCCCAAAATTTCAGAGCTATTACCAAGATGCAACTTTGCGCAGCTCAAACAAATCCACGCTCTCCTCTTAACAACTTCCATTCACCAAAACATCCATATTTCCTCGAGCTTTCTTCGACGAACCACCGAATTCGGGACCATGGACTACGCAAGTCTCGTGTTTTTTCATCTCAATCCCACTTTCAAAACCGAAATTCAATTCTGGAACGCAATGATCAGAGGTTACGCTTTCAATGGCCCTGTTGAGCAATCTGTGTCCTTGTATGGCGATTTGCTTCAAAGAGGGCTCAAACCCCATAATTTCACCTACCCATTTGTGCTAAACTCGTGTGCTGATTTGGGTTGGTTCTGGGATGGAAAAAAAGTGCATTGTCGAATTCTCAAGACTGGATTTTCGTTGAATTGTTCAGTTTCTGATGCGCTTTTTAATTTATATGTGAAATTTTCAGAATCTTCTGGACCTGGGGATGTTACTGATGGGATGGCGTCTGATGCTCGCAAGGTGTTTGATGAAATGTCTGTTAGATCTGTTGAAGCATGGAACCGAATGATCTCAAGGTATACGAGTACTGGAGGTGTTGATGGTGCACGGAAGTTGTTTAATACAATGGAAGATCGAGATACTGTCTCGTGGAATACAATGATTTCTGGTTATATAAAGGTAGGAGAGGTAATGAAAGCAAGAGAGTTATTTGAACAAATGCCAGAGAAGAATGTCGTGTCTTGGACTTTGATGATTGGGGCTTATGCCAAAGCTGGAGACCTTGTTACAGCAAGAATGTTCTTTAATAAAATGCCTCAAAGAAATGTTGTGTCTTGGAATTCCATGATTTCTAGCTACGTTCAACATGGGGATTTTCAGGAAGCACTGGATCTCTTTATCCAAATGTTATCAGAAGGTATAACTCCTGATGGGTATACATTTGTATCTGTTTTCTCAGCTTGTTCTCATTTGGGTGATCTAATGTTTGGTAAATGGATACACTACTTGATTGATGATTTCTCTCAACTTGGAGTTATTGCTGCAACTTCTTTGATTGAAATGTATGCAAAATGTGGAGACATCAACACAGCTTTTACTCTTTTCATGAAAATAGGAAAGAAAGACGTGTTTTTTTGGAATGTTATGCTGAAATCACTTGCCCTCCATGGAAAGGCTCCAGATGCTCTTAAATTATTCTCTTTGATGCAGAAAGAAGGGCTGAAGCCAAACGACTTCACCTTTCTTGGAGCTTTGTTTGCGTGCAGCCATGGAGGGATGGTGGAAGAAGGTCAGACCATATTTGA

mRNA sequence

ATGGCTCGAAAGATCTTCAAAAGAGAATCTTCTGGACCTGGGGATGTTACTGATGGGATGGCGTCTGATGCTCGCAAGGTGTTTGATGAAATGTCTGTTAGATCTGTTGAAGCATGGAACCGAATGATCTCAAGGTATACGAGTACTGGAGGTGTTGATGGTGCACGGAAGTTGTTTAATACAATGGAAGATCGAGATACTGTCTCGTGGAATACAATGATTTCTGGTTATATAAAGGTAGGAGAGGTAATGAAAGCAAGAGAGTTATTTGAACAAATGCCAGAGAAGAATGTCGTGTCTTGGACTTTGATGATTGGGGCTTATGCCAAAGCTGGAGACCTTGTTACAGCAAGAATGTTCTTTAATAAAATGCCTCAAAGAAATGTTGTGTCTTGGAATTCCATGATTTCTAGCTACGTTCAACATGGGGATTTTCAGGAAGCACTGGATCTCTTTATCCAAATGTTATCAGAAGAAAGAAGGGCTGAAGCCAAACGACTTCACCTTTCTTGGAGCTTTGTTTGCGTGCAGCCATGGAGGGATGGTGGAAGAAGGTCAGACCATATTTGA

Coding sequence (CDS)

ATGGCTCGAAAGATCTTCAAAAGAGAATCTTCTGGACCTGGGGATGTTACTGATGGGATGGCGTCTGATGCTCGCAAGGTGTTTGATGAAATGTCTGTTAGATCTGTTGAAGCATGGAACCGAATGATCTCAAGGTATACGAGTACTGGAGGTGTTGATGGTGCACGGAAGTTGTTTAATACAATGGAAGATCGAGATACTGTCTCGTGGAATACAATGATTTCTGGTTATATAAAGGTAGGAGAGGTAATGAAAGCAAGAGAGTTATTTGAACAAATGCCAGAGAAGAATGTCGTGTCTTGGACTTTGATGATTGGGGCTTATGCCAAAGCTGGAGACCTTGTTACAGCAAGAATGTTCTTTAATAAAATGCCTCAAAGAAATGTTGTGTCTTGGAATTCCATGATTTCTAGCTACGTTCAACATGGGGATTTTCAGGAAGCACTGGATCTCTTTATCCAAATGTTATCAGAAGAAAGAAGGGCTGAAGCCAAACGACTTCACCTTTCTTGGAGCTTTGTTTGCGTGCAGCCATGGAGGGATGGTGGAAGAAGGTCAGACCATATTTGA

Protein sequence

MARKIFKRESSGPGDVTDGMASDARKVFDEMSVRSVEAWNRMISRYTSTGGVDGARKLFNTMEDRDTVSWNTMISGYIKVGEVMKARELFEQMPEKNVVSWTLMIGAYAKAGDLVTARMFFNKMPQRNVVSWNSMISSYVQHGDFQEALDLFIQMLSEERRAEAKRLHLSWSFVCVQPWRDGGRRSDHI
Homology
[Close]
BLAST of Cla97C05G090010 vs. NCBI nr
Match: XP_008439399.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Cucumis melo])

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-07
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 11  SGPGDVTDGMASDARKVFDEMSVRSVEAWNRMISRYTS 49
           +GP D  DGMASDARKVFDEM VRSVE WNRMI RYTS
Sbjct: 106 TGPKDAADGMASDARKVFDEMCVRSVEVWNRMILRYTS 143

[Close]
BLAST of Cla97C05G090010 vs. NCBI nr
Match: KGN57367.1 (hypothetical protein Csa_3G182030 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-07
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 11  SGPGDVTDGMASDARKVFDEMSVRSVEAWNRMISRYTS 49
           +GP D  DGMASDARKVFDEM VRSVE WNRMI RYTS
Sbjct: 158 TGPKDAADGMASDARKVFDEMCVRSVEVWNRMILRYTS 195

[Close]
BLAST of Cla97C05G090010 vs. NCBI nr
Match: XP_004140846.2 (PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like isoform X1 [Cucumis sativus] >XP_011651147.1 PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like isoform X2 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-07
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 11  SGPGDVTDGMASDARKVFDEMSVRSVEAWNRMISRYTS 49
           +GP D  DGMASDARKVFDEM VRSVE WNRMI RYTS
Sbjct: 158 TGPKDAADGMASDARKVFDEMCVRSVEVWNRMILRYTS 195

[Close]
BLAST of Cla97C05G090010 vs. TrEMBL
Match: tr|A0A1S3AZC1|A0A1S3AZC1_CUCME (pentatricopeptide repeat-containing protein At3g29230-like OS=Cucumis melo OX=3656 GN=LOC103484215 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 8.8e-08
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 11  SGPGDVTDGMASDARKVFDEMSVRSVEAWNRMISRYTS 49
           +GP D  DGMASDARKVFDEM VRSVE WNRMI RYTS
Sbjct: 106 TGPKDAADGMASDARKVFDEMCVRSVEVWNRMILRYTS 143

[Close]
BLAST of Cla97C05G090010 vs. TrEMBL
Match: tr|A0A0A0L9R7|A0A0A0L9R7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182030 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 8.8e-08
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 11  SGPGDVTDGMASDARKVFDEMSVRSVEAWNRMISRYTS 49
           +GP D  DGMASDARKVFDEM VRSVE WNRMI RYTS
Sbjct: 158 TGPKDAADGMASDARKVFDEMCVRSVEVWNRMILRYTS 195

The following BLAST results are available for this feature:
BLAST of Cla97C05G090010 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008439399.11.3e-0781.58PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Cucumis m... [more]
KGN57367.11.3e-0781.58hypothetical protein Csa_3G182030 [Cucumis sativus][more]
XP_004140846.21.3e-0781.58PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like isoform X1... [more]
BLAST of Cla97C05G090010 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AZC1|A0A1S3AZC1_CUCME8.8e-0881.58pentatricopeptide repeat-containing protein At3g29230-like OS=Cucumis melo OX=36... [more]
tr|A0A0A0L9R7|A0A0A0L9R7_CUCSA8.8e-0881.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182030 PE=4 SV=1[more]
BLAST of Cla97C05G090010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C05G090010 vs. TAIR10
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009451 RNA modification
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G090010.1Cla97C05G090010.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 16..96
e-value: 1.7E-20
score: 75.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 97..169
e-value: 9.1E-17
score: 63.5
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILYSSF48452TPR-likecoord: 20..158
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 130..158
e-value: 7.9E-10
score: 38.2
coord: 68..98
e-value: 2.0E-9
score: 37.0
coord: 99..129
e-value: 8.5E-7
score: 28.7
coord: 38..65
e-value: 0.0013
score: 18.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 99..130
e-value: 6.7E-6
score: 24.0
coord: 68..98
e-value: 8.9E-9
score: 33.0
coord: 130..158
e-value: 3.7E-8
score: 31.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 66..100
score: 12.452
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 128..162
score: 11.564
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 101..127
score: 5.875
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 35..65
score: 8.396
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availablePANTHERPTHR24015:SF587SUBFAMILY NOT NAMEDcoord: 40..111
coord: 81..166
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 81..166
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 40..111
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 22..79
NoneNo IPR availablePANTHERPTHR24015:SF587SUBFAMILY NOT NAMEDcoord: 22..79

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C05G090010Bhi01G000969Wax gourdwgowmbB192
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cla97C05G090010Cla97C05G082080Watermelon (97103) v2wmbwmbB130
The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C05G090010Watermelon (97103) v2wmbwmbB023
Cla97C05G090010Silver-seed gourdcarwmbB0743
Cla97C05G090010Silver-seed gourdcarwmbB0772
Cla97C05G090010Silver-seed gourdcarwmbB0969
Cla97C05G090010Silver-seed gourdcarwmbB1042
Cla97C05G090010Cucumber (Gy14) v2cgybwmbB196
Cla97C05G090010Cucumber (Gy14) v2cgybwmbB367
Cla97C05G090010Cucumber (Gy14) v1cgywmbB147
Cla97C05G090010Cucumber (Gy14) v1cgywmbB522
Cla97C05G090010Cucurbita maxima (Rimu)cmawmbB346
Cla97C05G090010Cucurbita maxima (Rimu)cmawmbB424
Cla97C05G090010Cucurbita maxima (Rimu)cmawmbB649
Cla97C05G090010Cucurbita maxima (Rimu)cmawmbB651
Cla97C05G090010Cucurbita moschata (Rifu)cmowmbB331
Cla97C05G090010Cucurbita moschata (Rifu)cmowmbB404
Cla97C05G090010Cucurbita moschata (Rifu)cmowmbB621
Cla97C05G090010Cucurbita moschata (Rifu)cmowmbB624
Cla97C05G090010Wild cucumber (PI 183967)cpiwmbB209
Cla97C05G090010Wild cucumber (PI 183967)cpiwmbB404
Cla97C05G090010Cucumber (Chinese Long) v3cucwmbB206
Cla97C05G090010Cucumber (Chinese Long) v3cucwmbB400
Cla97C05G090010Cucumber (Chinese Long) v2cuwmbB204
Cla97C05G090010Cucumber (Chinese Long) v2cuwmbB386
Cla97C05G090010Bottle gourd (USVL1VR-Ls)lsiwmbB022
Cla97C05G090010Bottle gourd (USVL1VR-Ls)lsiwmbB334
Cla97C05G090010Melon (DHL92) v3.6.1medwmbB021
Cla97C05G090010Melon (DHL92) v3.6.1medwmbB423
Cla97C05G090010Melon (DHL92) v3.5.1mewmbB024
Cla97C05G090010Melon (DHL92) v3.5.1mewmbB434
Cla97C05G090010Watermelon (Charleston Gray)wcgwmbB109
Cla97C05G090010Watermelon (Charleston Gray)wcgwmbB229
Cla97C05G090010Watermelon (97103) v1wmwmbB206
Cla97C05G090010Watermelon (97103) v1wmwmbB269
Cla97C05G090010Wax gourdwgowmbB075