Cla97C05G089980 (gene) Watermelon (97103) v2

Overview
NameCla97C05G089980
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr05 : 8184367 .. 8185455 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTATCCTCTACAACTCTCCCCTTCAAAATTCTCTACGACCCATTTTTCTGGATCTTTCGATTGGTTCTTTGGACCCAAAAACCCAGCTCTGATTCGAATGTACCACCGCTTAAAGTGGAGGAGTATGGTAAGTAGTTGGGAGTAAAGCAGAGGATTGAAACCGCTAGAGGTTCCGGTAACGTCTACTGTAACGGGAGAGTAAAGTGGCGGTGTTTCAATGTACCTAAATTTTTGGGAATATCGAAGCTTTAATTAATCTTAACAATGGAGGTACGAATTCTAAGTTGAGATTTGAAAAAGGAGCGGGCTGTTTGGATGTCCGTAAAAGTAAAGACTTTTTCTTTCTTCAAAAAGTCAAAGAATTTGCGTAGTTTGTTTTGGGTTTTCAACTTCAAACTAATCATAGAACTTTTTTAATTTTTTTGAATTTTTTTTAATGACAATTGGATTGATGTCAAATGACTTAGATTTTGAAAAAATAAAAATAATACAAATTAATCTTTTGCTTATGTACATCAACTTAATTTCTCTTTGTGGTACTTCACAACCATTTATGAATTAATGCCTCAAATAGAATTTCAAACCACATCGTGATTTTTATAAAAATACAAGATGGCATCTATTGTTAAAATTTTGTAATCGTATGACTTTTCTTGAACATAAAATTGCATTCAAGGTATCAACAGTTTACGATGAATGAAAACTCACGATTACGAACATACAATTTAACGTTCCCGACGCTCCTCCTTCTCCTCCCGAGTCACTTCTAGCTTACAGCAGGTTGCTTTCATCCCTCAATTGGCTGCGATCCTTCGAATTTCACTACCAGTTCAAGCTGAAGAAATTCAAGAATGGTCCCTCCCCTTACGCAATAGGGGTCGGGGCACCGATCATGTCAAAGCCTCCTGCCGAGCAAATTATTGAAGTTGGTTCTAAGTCGGCACAGAATGTCGAAGGAACACAGCCTACCGAATGTGTTCTGAAGTCCGTGGGTAAAGAAGTTGAAGAGACGGTTCAGTTGCAGTTGAACCGACTGAGATCACAGGGAGTGATCCCCACAGCCGCTAAAGGTAGCTGGAGCTGA

mRNA sequence

ATGGATTATCCTCTACAACTCTCCCCTTCAAAATTCTCTACGACCCATTTTTCTGGATCTTTCGATTGGTTCTTTGGACCCAAAAACCCAGCTCTGATTCGAATGTACCACCGCTTAAAGTGGAGGAGTATGTTCAAGCTGAAGAAATTCAAGAATGGTCCCTCCCCTTACGCAATAGGGGTCGGGGCACCGATCATGTCAAAGCCTCCTGCCGAGCAAATTATTGAAGTTGGTTCTAAGTCGGCACAGAATGTCGAAGGAACACAGCCTACCGAATGTGTTCTGAAGTCCGTGGGTAAAGAAGTTGAAGAGACGGTTCAGTTGCAGTTGAACCGACTGAGATCACAGGGAGTGATCCCCACAGCCGCTAAAGGTAGCTGGAGCTGA

Coding sequence (CDS)

ATGGATTATCCTCTACAACTCTCCCCTTCAAAATTCTCTACGACCCATTTTTCTGGATCTTTCGATTGGTTCTTTGGACCCAAAAACCCAGCTCTGATTCGAATGTACCACCGCTTAAAGTGGAGGAGTATGTTCAAGCTGAAGAAATTCAAGAATGGTCCCTCCCCTTACGCAATAGGGGTCGGGGCACCGATCATGTCAAAGCCTCCTGCCGAGCAAATTATTGAAGTTGGTTCTAAGTCGGCACAGAATGTCGAAGGAACACAGCCTACCGAATGTGTTCTGAAGTCCGTGGGTAAAGAAGTTGAAGAGACGGTTCAGTTGCAGTTGAACCGACTGAGATCACAGGGAGTGATCCCCACAGCCGCTAAAGGTAGCTGGAGCTGA

Protein sequence

MDYPLQLSPSKFSTTHFSGSFDWFFGPKNPALIRMYHRLKWRSMFKLKKFKNGPSPYAIGVGAPIMSKPPAEQIIEVGSKSAQNVEGTQPTECVLKSVGKEVEETVQLQLNRLRSQGVIPTAAKGSWS
Homology
[Close]
BLAST of Cla97C05G089980 vs. NCBI nr
Match: CAN64513.1 (hypothetical protein VITISV_004352 [Vitis vinifera])

HSP 1 Score: 102.4 bits (254), Expect = 1.1e-18
Identity = 56/78 (71.79%), Postives = 60/78 (76.92%), Query Frame = 0 

Query: 56  PYAIGVGAPIMSKPPAEQIIEVGSKSA--------QNVEGTQPTECVLKSVGKEVEETVQ 115
           PYAIG  APIMSKPPAEQI EVGS+SA         +VEGTQPTECV +S GKEVEET Q
Sbjct: 440 PYAIGAEAPIMSKPPAEQITEVGSESAGDPEKAAEHSVEGTQPTECVPESAGKEVEETAQ 499

Query: 116 LQLNRLRSQGVIPTAAKG 126
            Q NRLRS+G IPTAAKG
Sbjct: 500 SQPNRLRSEGAIPTAAKG 517

[Close]
BLAST of Cla97C05G089980 vs. TrEMBL
Match: tr|A5AFS6|A5AFS6_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_004352 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 7.5e-19
Identity = 56/78 (71.79%), Postives = 60/78 (76.92%), Query Frame = 0 

Query: 56  PYAIGVGAPIMSKPPAEQIIEVGSKSA--------QNVEGTQPTECVLKSVGKEVEETVQ 115
           PYAIG  APIMSKPPAEQI EVGS+SA         +VEGTQPTECV +S GKEVEET Q
Sbjct: 440 PYAIGAEAPIMSKPPAEQITEVGSESAGDPEKAAEHSVEGTQPTECVPESAGKEVEETAQ 499

Query: 116 LQLNRLRSQGVIPTAAKG 126
            Q NRLRS+G IPTAAKG
Sbjct: 500 SQPNRLRSEGAIPTAAKG 517

[Close]
BLAST of Cla97C05G089980 vs. TrEMBL
Match: tr|F6H890|F6H890_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0505g00020 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 5.0e-15
Identity = 49/71 (69.01%), Postives = 53/71 (74.65%), Query Frame = 0 

Query: 66  MSKPPAEQIIEVGSKSA--------QNVEGTQPTECVLKSVGKEVEETVQLQLNRLRSQG 125
           MSKPPAEQI EVGS+SA         +VEGTQPTECV +S GKEVEE  Q Q NRLRS+G
Sbjct: 1   MSKPPAEQITEVGSESAGDPEKAAEHSVEGTQPTECVPESAGKEVEEMAQSQPNRLRSEG 60

Query: 126 VIPTAAKGSWS 129
            IP AAKGSWS
Sbjct: 61  AIPIAAKGSWS 71

The following BLAST results are available for this feature:
BLAST of Cla97C05G089980 vs. NCBI nr
Match NameE-valueIdentityDescription
CAN64513.11.1e-1871.79hypothetical protein VITISV_004352 [Vitis vinifera][more]
BLAST of Cla97C05G089980 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A5AFS6|A5AFS6_VITVI7.5e-1971.79Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_004352 PE=4 SV=1[more]
tr|F6H890|F6H890_VITVI5.0e-1569.01Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0505g00020 PE=4 SV=... [more]
BLAST of Cla97C05G089980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C05G089980 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0004518 nuclease activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G089980.1Cla97C05G089980.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C05G089980Cla006189Watermelon (97103) v1wmwmbB206
Cla97C05G089980ClCG05G007970Watermelon (Charleston Gray)wcgwmbB229
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C05G089980Cucurbita moschata (Rifu)cmowmbB331
Cla97C05G089980Cucurbita moschata (Rifu)cmowmbB404
Cla97C05G089980Cucurbita moschata (Rifu)cmowmbB621
Cla97C05G089980Cucurbita moschata (Rifu)cmowmbB624
Cla97C05G089980Wild cucumber (PI 183967)cpiwmbB209
Cla97C05G089980Wild cucumber (PI 183967)cpiwmbB404
Cla97C05G089980Cucumber (Chinese Long) v3cucwmbB206
Cla97C05G089980Cucumber (Chinese Long) v3cucwmbB400
Cla97C05G089980Cucumber (Chinese Long) v2cuwmbB204
Cla97C05G089980Cucumber (Chinese Long) v2cuwmbB386
Cla97C05G089980Bottle gourd (USVL1VR-Ls)lsiwmbB022
Cla97C05G089980Bottle gourd (USVL1VR-Ls)lsiwmbB334
Cla97C05G089980Melon (DHL92) v3.6.1medwmbB021
Cla97C05G089980Melon (DHL92) v3.6.1medwmbB423
Cla97C05G089980Melon (DHL92) v3.5.1mewmbB024
Cla97C05G089980Melon (DHL92) v3.5.1mewmbB434
Cla97C05G089980Watermelon (Charleston Gray)wcgwmbB109
Cla97C05G089980Watermelon (97103) v1wmwmbB269
Cla97C05G089980Wax gourdwgowmbB075
Cla97C05G089980Wax gourdwgowmbB192
Cla97C05G089980Watermelon (97103) v2wmbwmbB023
Cla97C05G089980Watermelon (97103) v2wmbwmbB130
Cla97C05G089980Silver-seed gourdcarwmbB0743
Cla97C05G089980Silver-seed gourdcarwmbB0772
Cla97C05G089980Silver-seed gourdcarwmbB0969
Cla97C05G089980Silver-seed gourdcarwmbB1042
Cla97C05G089980Cucumber (Gy14) v2cgybwmbB196
Cla97C05G089980Cucumber (Gy14) v2cgybwmbB367
Cla97C05G089980Cucumber (Gy14) v1cgywmbB147
Cla97C05G089980Cucumber (Gy14) v1cgywmbB522
Cla97C05G089980Cucurbita maxima (Rimu)cmawmbB346
Cla97C05G089980Cucurbita maxima (Rimu)cmawmbB424
Cla97C05G089980Cucurbita maxima (Rimu)cmawmbB649
Cla97C05G089980Cucurbita maxima (Rimu)cmawmbB651