Cla97C05G088690 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G088690
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	protein SMG9-like
Location	Cla97Chr05 : 6805243 .. 6807155 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGCATTTGATGTTAACTGTAAGTAGCAACCTTCATCTTGATGATCCCTATTTTGTTTTAACTATATCATGTCATGAATTTTACTCTGTGCCATTGTTGTATCGTAACAATTATTTCTTCATTATTTATCTAACACTTATTTCTATATTTTGAAATTTGATGCTATCGCCAATTATTCTTTTTGCAGGTTGACTTGCTTAAACATGGCTTGCCTGACCCATCTTCTCCTATTTCTTCTCATCCACGAAATTCTAATGTAGCATCCGAGAGGGAATACAAAGAAAAAACCTCTACAAGTGAAGAGTATATGGCAACTCCAATCTTTGTTCATGCGAAGTGAGTGAAAACTTTCTAAGCTAAGCTTTTATGACATTTCTTAAACAAGATACAGAATGTAGTCAACAATAGGATTAAGGTCAGCTACTAAACTATGACACTATTGCCAATCACATGGAAGAACACCCTATAATGCACAAGCTAGCAGGAGAAACAGCATAAGCTGTAGACTTCACTTCACATGTATGAGAAATTTTTATCTCCTAAACTCTTCGGGTCCATCATCTGTCATGAAACTTAAAAACAGTATGTAATGAAGCTCATAATTTTAGGAGTTCGATGTACCAAAAAATATGATTTATAGTTTGAGTAACAGAAGAATTAGTTAAGAAGTTGAAATGAAATCTGCAAGGAAATGCACGTCTTTAGAGCCCAAAAGTTCCAGTCCCTCTTAGAAGAATTTTTAATCATTAGACATTTTGCTTAAGGAACATAGTAATAACTGATTGGTGGTCTGTTCTTTTTTCTTTGTTTTTTTTTCCTTAAATCATGTGCAGAGTGCAAGATCGAGATCTTGTTCCACACAATATCTTGCAACTGAAGAGAGCATTTACCTACTATTTTAAATCCTCTTCATTTATGGGAGACAAATTTGAAAAAGTCCATAGTGAGCAGCTACTTTCCTCTGTGGTTCCTGATACCAGGAATTTAGATGTAGATGGTGAAGATCGAAGGTTGCTTGTCATCCCAAACCGGAACAAGGATGACTCTACCAGAGGTCAATATGAAAGTTTTAACTTAGCTCTGTGGAAGCTGAGGGATCAGGTCTGTAGTTCACGTTTACCTTATTTATGATCTACTCACTATATGGGTTTCAATATCTATTAATTCATATCGTTTTTTATTTGAGTTCCTAAACTTTCAAATATTCTAATTTAATCTCGTAACTTTGCCTTAAAAATTTATTTTGATCATAAGCACGTAGTCAGTAAAATGTCTATATGAACAAGTGTTTGGAGTTATAACTTGTAAGTTAGATGTTTGATTTTTTCAACGAATTAGGTCTTTTTGTTAAATGATTAGTGAAAGATTAATATCGATATCGAAATTTTAATTTTATAGATATATCGATGGATATTTTTGTTAGTCATAAAATTTGTAAAATTTATTTAGATTAATAATTAAGTTGTTTTTATTTCCAAATTAAGTTATGGATATTGGTATTAGTATTCATATTCATATTCAACTAAATAGATGACATTTTTTATGCTTACGAGCATTTATAAAGAATGTTGGAGATATCCATGGATATTTTATATTGATGTCGAACCCTTTGATTTACAGAATATTCACGTGTATTTTATCCTATTTCATGGTTTGAAGTTTAAGGACAATTAATAGACCGTTTATGTATCTAATAAGTTAGGAGTATATATTTACTGTGCTGGAAGAGAATCTCCAACATTTCATAACTTGTTCAGGTTCTATCCATGAATGGTGCATCGTTTTCCAGAACTGTTTCGGAACGCGATTGGTTAAAAAACTCCGTGAAGATATGGGAATCAGTGAAGAGCTCTCCTATTGTAATGGAGTACGCTAGAACGCTTCAATCTTCAGGTATGTTTAAGAGATAA

mRNA sequence

ATGTGGCATTTGATGTTAACTGTTGACTTGCTTAAACATGGCTTGCCTGACCCATCTTCTCCTATTTCTTCTCATCCACGAAATTCTAATGTAGCATCCGAGAGGGAATACAAAGAAAAAACCTCTACAAGTGAAGAGTATATGGCAACTCCAATCTTTGTTCATGCGAAAGTGCAAGATCGAGATCTTGTTCCACACAATATCTTGCAACTGAAGAGAGCATTTACCTACTATTTTAAATCCTCTTCATTTATGGGAGACAAATTTGAAAAAGTCCATAGTGAGCAGCTACTTTCCTCTGTGGTTCCTGATACCAGGAATTTAGATGTAGATGGTGAAGATCGAAGGTTGCTTGTCATCCCAAACCGGAACAAGGATGACTCTACCAGAGGTCAATATGAAAGTTTTAACTTAGCTCTGTGGAAGCTGAGGGATCAGGTTCTATCCATGAATGGTGCATCGTTTTCCAGAACTGTTTCGGAACGCGATTGGTTAAAAAACTCCGTGAAGATATGGGAATCAGTGAAGAGCTCTCCTATTGTAATGGAGTACGCTAGAACGCTTCAATCTTCAGGTATGTTTAAGAGATAA

Coding sequence (CDS)

ATGTGGCATTTGATGTTAACTGTTGACTTGCTTAAACATGGCTTGCCTGACCCATCTTCTCCTATTTCTTCTCATCCACGAAATTCTAATGTAGCATCCGAGAGGGAATACAAAGAAAAAACCTCTACAAGTGAAGAGTATATGGCAACTCCAATCTTTGTTCATGCGAAAGTGCAAGATCGAGATCTTGTTCCACACAATATCTTGCAACTGAAGAGAGCATTTACCTACTATTTTAAATCCTCTTCATTTATGGGAGACAAATTTGAAAAAGTCCATAGTGAGCAGCTACTTTCCTCTGTGGTTCCTGATACCAGGAATTTAGATGTAGATGGTGAAGATCGAAGGTTGCTTGTCATCCCAAACCGGAACAAGGATGACTCTACCAGAGGTCAATATGAAAGTTTTAACTTAGCTCTGTGGAAGCTGAGGGATCAGGTTCTATCCATGAATGGTGCATCGTTTTCCAGAACTGTTTCGGAACGCGATTGGTTAAAAAACTCCGTGAAGATATGGGAATCAGTGAAGAGCTCTCCTATTGTAATGGAGTACGCTAGAACGCTTCAATCTTCAGGTATGTTTAAGAGATAA

Protein sequence

MWHLMLTVDLLKHGLPDPSSPISSHPRNSNVASEREYKEKTSTSEEYMATPIFVHAKVQDRDLVPHNILQLKRAFTYYFKSSSFMGDKFEKVHSEQLLSSVVPDTRNLDVDGEDRRLLVIPNRNKDDSTRGQYESFNLALWKLRDQVLSMNGASFSRTVSERDWLKNSVKIWESVKSSPIVMEYARTLQSSGMFKR

Homology

[Close]

BLAST of Cla97C05G088690 vs. NCBI nr
Match: XP_004147641.1 (PREDICTED: protein SMG9-like [Cucumis sativus] >KGN57223.1 hypothetical protein Csa_3G171800 [Cucumis sativus])

HSP 1 Score: 377.9 bits (969), Expect = 2.1e-101
Identity = 187/196 (95.41%), Postives = 192/196 (97.96%), Query Frame = 0


Query: 1   MWHLMLTVDLLKHGLPDPSSPISSHPRNSNVASEREYKEKTSTSEEYMATPIFVHAKVQD 60
           MWHLMLTVDLLKHGLPDPSSPISSH +NSNVASE+EYKEKTSTSEEYMATPIFVHAKVQD
Sbjct: 217 MWHLMLTVDLLKHGLPDPSSPISSHAQNSNVASEKEYKEKTSTSEEYMATPIFVHAKVQD 276

Query: 61  RDLVPHNILQLKRAFTYYFKSSSFMGDKFEKVHSEQLLSSVVPDTRNLDVDGEDRRLLVI 120
           RDLVP NILQLKRAF YYFK+SSFMGDKFEKVHSEQLLSSVVPDTRNLDVDGEDRRLL+I
Sbjct: 277 RDLVPQNILQLKRAFAYYFKTSSFMGDKFEKVHSEQLLSSVVPDTRNLDVDGEDRRLLLI 336

Query: 121 PNRNKDDSTRGQYESFNLALWKLRDQVLSMNGASFSRTVSERDWLKNSVKIWESVKSSPI 180
           PNRNKDDSTRGQYESFNLALWKLRDQVLSMNGASF RTVSERDWLKNSVKIWESVKSSPI
Sbjct: 337 PNRNKDDSTRGQYESFNLALWKLRDQVLSMNGASFPRTVSERDWLKNSVKIWESVKSSPI 396

Query: 181 VMEYARTLQSSGMFKR 197
           VMEYARTLQSSGMF+R
Sbjct: 397 VMEYARTLQSSGMFRR 412

[Close]

BLAST of Cla97C05G088690 vs. NCBI nr
Match: XP_008439030.1 (PREDICTED: protein SMG9-like isoform X1 [Cucumis melo])

HSP 1 Score: 374.0 bits (959), Expect = 3.1e-100
Identity = 184/196 (93.88%), Postives = 191/196 (97.45%), Query Frame = 0


Query: 1   MWHLMLTVDLLKHGLPDPSSPISSHPRNSNVASEREYKEKTSTSEEYMATPIFVHAKVQD 60
           MWHLMLTVDLLKHGLPDPSSPISSH +NSNVASE+EYKEKTSTSEEY+ATPIFVHAKVQD
Sbjct: 217 MWHLMLTVDLLKHGLPDPSSPISSHAQNSNVASEKEYKEKTSTSEEYLATPIFVHAKVQD 276

Query: 61  RDLVPHNILQLKRAFTYYFKSSSFMGDKFEKVHSEQLLSSVVPDTRNLDVDGEDRRLLVI 120
           RDLVPHNILQLKRAF YYFK+SSFMGDKFEKVHSEQLLSSVVPDTRNLDVDGEDRRLL+I
Sbjct: 277 RDLVPHNILQLKRAFAYYFKTSSFMGDKFEKVHSEQLLSSVVPDTRNLDVDGEDRRLLLI 336

Query: 121 PNRNKDDSTRGQYESFNLALWKLRDQVLSMNGASFSRTVSERDWLKNSVKIWESVKSSPI 180
           PNRNKDDSTRGQYESF LALWKLRDQVLSM GASF RTVSERDWLKNS+KIWESVKSSPI
Sbjct: 337 PNRNKDDSTRGQYESFKLALWKLRDQVLSMKGASFPRTVSERDWLKNSLKIWESVKSSPI 396

Query: 181 VMEYARTLQSSGMFKR 197
           VMEYARTLQSSGMF+R
Sbjct: 397 VMEYARTLQSSGMFRR 412

[Close]

BLAST of Cla97C05G088690 vs. NCBI nr
Match: XP_016899123.1 (PREDICTED: protein SMG9-like isoform X2 [Cucumis melo])

HSP 1 Score: 360.9 bits (925), Expect = 2.7e-96
Identity = 180/196 (91.84%), Postives = 187/196 (95.41%), Query Frame = 0


Query: 1   MWHLMLTVDLLKHGLPDPSSPISSHPRNSNVASEREYKEKTSTSEEYMATPIFVHAKVQD 60
           MWHLMLTVDLLKHGLPDPSSPISSH +NSNVASE+EYKEKTSTSEEY+ATPIFVHAKVQD
Sbjct: 217 MWHLMLTVDLLKHGLPDPSSPISSHAQNSNVASEKEYKEKTSTSEEYLATPIFVHAKVQD 276

Query: 61  RDLVPHNILQLKRAFTYYFKSSSFMGDKFEKVHSEQLLSSVVPDTRNLDVDGEDRRLLVI 120
           RDLVPHNILQLKRAF YYFK+SSFMGDKFEKVHSEQLLSSVVPDTRNLDVDGEDRRLL+I
Sbjct: 277 RDLVPHNILQLKRAFAYYFKTSSFMGDKFEKVHSEQLLSSVVPDTRNLDVDGEDRRLLLI 336

Query: 121 PNRNKDDSTRGQYESFNLALWKLRDQVLSMNGASFSRTVSERDWLKNSVKIWESVKSSPI 180
           PNRNKDDSTRGQYESF LALWKLRDQ     GASF RTVSERDWLKNS+KIWESVKSSPI
Sbjct: 337 PNRNKDDSTRGQYESFKLALWKLRDQ-----GASFPRTVSERDWLKNSLKIWESVKSSPI 396

Query: 181 VMEYARTLQSSGMFKR 197
           VMEYARTLQSSGMF+R
Sbjct: 397 VMEYARTLQSSGMFRR 407

[Close]

BLAST of Cla97C05G088690 vs. NCBI nr
Match: XP_022137865.1 (protein SMG9-like [Momordica charantia])

HSP 1 Score: 349.4 bits (895), Expect = 8.1e-93
Identity = 173/196 (88.27%), Postives = 182/196 (92.86%), Query Frame = 0


Query: 1   MWHLMLTVDLLKHGLPDPSSPISSHPRNSNVASEREYKEKTSTSEEYMATPIFVHAKVQD 60
           MW+LMLTVDLLKHGLPDPSSPI SHP NSN  SE+EYK+KTST+EEYMATPIFVHAKVQD
Sbjct: 115 MWNLMLTVDLLKHGLPDPSSPIFSHPPNSNAGSEKEYKDKTSTTEEYMATPIFVHAKVQD 174

Query: 61  RDLVPHNILQLKRAFTYYFKSSSFMGDKFEKVHSEQLLSSVVPDTRNLDVDGEDRRLLVI 120
           RDLVPHNILQLKRAF  YF+S SFMGDKFEK HSEQ +SSVVPD RNLDVDGEDRRL+VI
Sbjct: 175 RDLVPHNILQLKRAFARYFRSCSFMGDKFEKSHSEQPVSSVVPDARNLDVDGEDRRLVVI 234

Query: 121 PNRNKDDSTRGQYESFNLALWKLRDQVLSMNGASFSRTVSERDWLKNSVKIWESVKSSPI 180
           P  NKDDSTRGQYESFNLALWKLRDQVLSMNGASFSRTVSERDWLKNS KIWE VKSSPI
Sbjct: 235 PIWNKDDSTRGQYESFNLALWKLRDQVLSMNGASFSRTVSERDWLKNSAKIWELVKSSPI 294

Query: 181 VMEYARTLQSSGMFKR 197
           VMEYA+TLQSSGMF+R
Sbjct: 295 VMEYAKTLQSSGMFRR 310

[Close]

BLAST of Cla97C05G088690 vs. NCBI nr
Match: XP_022935704.1 (protein SMG9-like [Cucurbita moschata])

HSP 1 Score: 337.8 bits (865), Expect = 2.5e-89
Identity = 170/196 (86.73%), Postives = 179/196 (91.33%), Query Frame = 0


Query: 1   MWHLMLTVDLLKHGLPDPSSPISSHPRNSNVASEREYKEKTSTSEEYMATPIFVHAKVQD 60
           MW LMLTVDLLKHGLPDPSS + SH +NSNV SE+E+K+K S SEEYMATPIFVHAKV+D
Sbjct: 217 MWRLMLTVDLLKHGLPDPSSSVFSHTQNSNVGSEKEHKDKVSASEEYMATPIFVHAKVED 276

Query: 61  RDLVPHNILQLKRAFTYYFKSSSFMGDKFEKVHSEQLLSSVVPDTRNLDVDGEDRRLLVI 120
            DLVPHNILQLKRAF  +FK+SSFMGD   KV SEQLLSSVVPDTRNLDVDGEDRRLL I
Sbjct: 277 PDLVPHNILQLKRAFAQFFKTSSFMGD---KVQSEQLLSSVVPDTRNLDVDGEDRRLLFI 336

Query: 121 PNRNKDDSTRGQYESFNLALWKLRDQVLSMNGASFSRTVSERDWLKNSVKIWESVKSSPI 180
           PNRNKDDSTRGQYESFNLALWKLRDQVLSMNG SFSRTVSERDWLKNSVKIWE VKSSPI
Sbjct: 337 PNRNKDDSTRGQYESFNLALWKLRDQVLSMNGTSFSRTVSERDWLKNSVKIWELVKSSPI 396

Query: 181 VMEYARTLQSSGMFKR 197
           VMEYARTLQSSGMF+R
Sbjct: 397 VMEYARTLQSSGMFRR 409

[Close]

BLAST of Cla97C05G088690 vs. TrEMBL
Match: tr|A0A0A0L618|A0A0A0L618_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171800 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 1.4e-101
Identity = 187/196 (95.41%), Postives = 192/196 (97.96%), Query Frame = 0


Query: 1   MWHLMLTVDLLKHGLPDPSSPISSHPRNSNVASEREYKEKTSTSEEYMATPIFVHAKVQD 60
           MWHLMLTVDLLKHGLPDPSSPISSH +NSNVASE+EYKEKTSTSEEYMATPIFVHAKVQD
Sbjct: 217 MWHLMLTVDLLKHGLPDPSSPISSHAQNSNVASEKEYKEKTSTSEEYMATPIFVHAKVQD 276

Query: 61  RDLVPHNILQLKRAFTYYFKSSSFMGDKFEKVHSEQLLSSVVPDTRNLDVDGEDRRLLVI 120
           RDLVP NILQLKRAF YYFK+SSFMGDKFEKVHSEQLLSSVVPDTRNLDVDGEDRRLL+I
Sbjct: 277 RDLVPQNILQLKRAFAYYFKTSSFMGDKFEKVHSEQLLSSVVPDTRNLDVDGEDRRLLLI 336

Query: 121 PNRNKDDSTRGQYESFNLALWKLRDQVLSMNGASFSRTVSERDWLKNSVKIWESVKSSPI 180
           PNRNKDDSTRGQYESFNLALWKLRDQVLSMNGASF RTVSERDWLKNSVKIWESVKSSPI
Sbjct: 337 PNRNKDDSTRGQYESFNLALWKLRDQVLSMNGASFPRTVSERDWLKNSVKIWESVKSSPI 396

Query: 181 VMEYARTLQSSGMFKR 197
           VMEYARTLQSSGMF+R
Sbjct: 397 VMEYARTLQSSGMFRR 412

[Close]

BLAST of Cla97C05G088690 vs. TrEMBL
Match: tr|A0A1S3AYF2|A0A1S3AYF2_CUCME (protein SMG9-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483940 PE=4 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 2.0e-100
Identity = 184/196 (93.88%), Postives = 191/196 (97.45%), Query Frame = 0


Query: 1   MWHLMLTVDLLKHGLPDPSSPISSHPRNSNVASEREYKEKTSTSEEYMATPIFVHAKVQD 60
           MWHLMLTVDLLKHGLPDPSSPISSH +NSNVASE+EYKEKTSTSEEY+ATPIFVHAKVQD
Sbjct: 217 MWHLMLTVDLLKHGLPDPSSPISSHAQNSNVASEKEYKEKTSTSEEYLATPIFVHAKVQD 276

Query: 61  RDLVPHNILQLKRAFTYYFKSSSFMGDKFEKVHSEQLLSSVVPDTRNLDVDGEDRRLLVI 120
           RDLVPHNILQLKRAF YYFK+SSFMGDKFEKVHSEQLLSSVVPDTRNLDVDGEDRRLL+I
Sbjct: 277 RDLVPHNILQLKRAFAYYFKTSSFMGDKFEKVHSEQLLSSVVPDTRNLDVDGEDRRLLLI 336

Query: 121 PNRNKDDSTRGQYESFNLALWKLRDQVLSMNGASFSRTVSERDWLKNSVKIWESVKSSPI 180
           PNRNKDDSTRGQYESF LALWKLRDQVLSM GASF RTVSERDWLKNS+KIWESVKSSPI
Sbjct: 337 PNRNKDDSTRGQYESFKLALWKLRDQVLSMKGASFPRTVSERDWLKNSLKIWESVKSSPI 396

Query: 181 VMEYARTLQSSGMFKR 197
           VMEYARTLQSSGMF+R
Sbjct: 397 VMEYARTLQSSGMFRR 412

[Close]

BLAST of Cla97C05G088690 vs. TrEMBL
Match: tr|A0A1S4DT40|A0A1S4DT40_CUCME (protein SMG9-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483940 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 1.8e-96
Identity = 180/196 (91.84%), Postives = 187/196 (95.41%), Query Frame = 0


Query: 1   MWHLMLTVDLLKHGLPDPSSPISSHPRNSNVASEREYKEKTSTSEEYMATPIFVHAKVQD 60
           MWHLMLTVDLLKHGLPDPSSPISSH +NSNVASE+EYKEKTSTSEEY+ATPIFVHAKVQD
Sbjct: 217 MWHLMLTVDLLKHGLPDPSSPISSHAQNSNVASEKEYKEKTSTSEEYLATPIFVHAKVQD 276

Query: 61  RDLVPHNILQLKRAFTYYFKSSSFMGDKFEKVHSEQLLSSVVPDTRNLDVDGEDRRLLVI 120
           RDLVPHNILQLKRAF YYFK+SSFMGDKFEKVHSEQLLSSVVPDTRNLDVDGEDRRLL+I
Sbjct: 277 RDLVPHNILQLKRAFAYYFKTSSFMGDKFEKVHSEQLLSSVVPDTRNLDVDGEDRRLLLI 336

Query: 121 PNRNKDDSTRGQYESFNLALWKLRDQVLSMNGASFSRTVSERDWLKNSVKIWESVKSSPI 180
           PNRNKDDSTRGQYESF LALWKLRDQ     GASF RTVSERDWLKNS+KIWESVKSSPI
Sbjct: 337 PNRNKDDSTRGQYESFKLALWKLRDQ-----GASFPRTVSERDWLKNSLKIWESVKSSPI 396

Query: 181 VMEYARTLQSSGMFKR 197
           VMEYARTLQSSGMF+R
Sbjct: 397 VMEYARTLQSSGMFRR 407

[Close]

BLAST of Cla97C05G088690 vs. TrEMBL
Match: tr|A0A2P4ID91|A0A2P4ID91_QUESU (Protein smg9 OS=Quercus suber OX=58331 GN=CFP56_29290 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 9.3e-61
Identity = 118/196 (60.20%), Postives = 147/196 (75.00%), Query Frame = 0


Query: 1   MWHLMLTVDLLKHGLPDPSSPISSHPRNSNVASEREYKEKTSTSEEYMATPIFVHAKVQD 60
           MW LMLTVDLLKHG+PDPSS I +H  +SN+  E+E K+K   SEEY+A P+FVH K+ D
Sbjct: 211 MWRLMLTVDLLKHGIPDPSSLIPAHSLSSNLGPEKENKDKVHESEEYLAAPVFVHTKLHD 270

Query: 61  RDLVPHNILQLKRAFTYYFKSSSFMGDKFEKVHSEQLLSSVVPDTRNLDVDGEDRRLLVI 120
           +DL PHNI+QL++A   YF  SSFM DK   +  +Q  SSV    +++D D     L VI
Sbjct: 271 QDLTPHNIVQLRKAILQYFGLSSFMRDKSGNMTKDQPFSSVASGAQSIDPDSVWPNLFVI 330

Query: 121 PNRNKDDSTRGQYESFNLALWKLRDQVLSMNGASFSRTVSERDWLKNSVKIWESVKSSPI 180
           P +NKD+S RGQYES+N +LWK+RDQVLSM   SF+RTVSERDWLKN  KIWE VKSSPI
Sbjct: 331 PLKNKDESPRGQYESYNTSLWKMRDQVLSMKCPSFARTVSERDWLKNVAKIWELVKSSPI 390

Query: 181 VMEYARTLQSSGMFKR 197
           + EY++TLQSSG+F+R
Sbjct: 391 IAEYSKTLQSSGLFRR 406

[Close]

BLAST of Cla97C05G088690 vs. TrEMBL
Match: tr|A0A2I4EH73|A0A2I4EH73_9ROSI (protein SMG9-like isoform X1 OS=Juglans regia OX=51240 GN=LOC108989565 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 9.6e-58
Identity = 114/196 (58.16%), Postives = 141/196 (71.94%), Query Frame = 0


Query: 1   MWHLMLTVDLLKHGLPDPSSPISSHPRNSNVASEREYKEKTSTSEEYMATPIFVHAKVQD 60
           MW L+ TVDLLKHG+PDPSS   SH ++SN+  E+E K+K + SEEYMA PIFVH K  D
Sbjct: 221 MWRLISTVDLLKHGIPDPSSIFPSHTQSSNMGPEKENKDKVTKSEEYMAVPIFVHTKFHD 280

Query: 61  RDLVPHNILQLKRAFTYYFKSSSFMGDKFEKVHSEQLLSSVVPDTRNLDVDGEDRRLLVI 120
            D  P N  Q++++ ++YF +SSF+ DK   +  +Q LSS     +  D D     L VI
Sbjct: 281 EDFSPRNFFQMRKSISHYFSTSSFIRDKTGGITKDQPLSSAASGIQRNDPDSLWPDLFVI 340

Query: 121 PNRNKDDSTRGQYESFNLALWKLRDQVLSMNGASFSRTVSERDWLKNSVKIWESVKSSPI 180
           P + KDDS R QYES+  ALWKLRDQV+SMNG SF+RTVSERDWLKNS KIWE VK+SPI
Sbjct: 341 PRKKKDDSPRDQYESYISALWKLRDQVISMNGPSFARTVSERDWLKNSAKIWELVKNSPI 400

Query: 181 VMEYARTLQSSGMFKR 197
           + EY RTLQSSG+F+R
Sbjct: 401 IAEYCRTLQSSGLFRR 416

[Close]

BLAST of Cla97C05G088690 vs. Swiss-Prot
Match: sp|B5DDX6|SMG9_XENTR (Protein SMG9 OS=Xenopus tropicalis OX=8364 GN=smg9 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.1e-05
Identity = 51/205 (24.88%), Postives = 87/205 (42.44%), Query Frame = 0


Query: 1   MWHLMLTVDLLKHGLPDPSSPISSHPRNSNVASEREYKEKTSTSEEYMATPIFVHAKVQD 60
           ++  + T ++LK     PS+P  SH  + +  S+           EY    +FV  K + 
Sbjct: 319 LYRFLQTAEMLK-----PSTPSPSHESSGSSGSDE--------GIEYYPHVVFVQNKAKR 378

Query: 61  RDLVPHNILQLKRAFTYYFKSSS--------------FMGDKFEKVHSEQLLSSVVPDTR 120
            D  P  + Q+          S               F G  ++ + SE  L  +   T 
Sbjct: 379 EDYCPRTLKQMHTVIDKLMLHSHLRYKGTLSMLDCNIFPGLPYDFIESEVNLFLI--PTM 438

Query: 121 NLDVDGEDRRLLV--IPNRNKDDSTRGQYESFNLALWKLRDQVLSMNGASFSRTV-SERD 180
             DVD    R     IP  +   + +G + SF+  + +LR Q++SM+    S T+ +E++
Sbjct: 439 ESDVDETISRAGTSGIPLFSLLPAYKG-HPSFHSLISRLRSQIMSMSRPQLSHTILTEKN 498

Query: 181 WLKNSVKIWESVKSSPIVMEYARTL 189
           W   + +IW+ VK S  + EY+R L
Sbjct: 499 WFHYAARIWDGVKKSSALSEYSRLL 507

[Close]

BLAST of Cla97C05G088690 vs. Swiss-Prot
Match: sp|Q9DB90|SMG9_MOUSE (Protein SMG9 OS=Mus musculus OX=10090 GN=Smg9 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.0e-05
Identity = 47/208 (22.60%), Postives = 83/208 (39.90%), Query Frame = 0


Query: 1   MWHLMLTVDLLKHGLPDPSSPISSHPRNSNVASEREYKEKTSTSEEYMATPIFVHAKVQD 60
           ++  + T +++K     PS+P  SH  +S+  S+           EY    +F+  K + 
Sbjct: 330 LYRFLQTAEMVK-----PSTPSPSHESSSSAGSDE--------GTEYYPHLVFLQNKARR 389

Query: 61  RDLVPHNILQLKRAFTYYFKSSSFMGDKFEKVHSEQLLSSVVPDTRNLDVDGEDRRLLVI 120
            D  P  + Q+          S         +    +   + PD  + +V+     L ++
Sbjct: 390 EDFCPRKLRQMHLMIDQLMAHSHLRYKGTLSMLQCNVFPGLPPDFLDAEVN-----LFLV 449

Query: 121 P-------NRNKDDSTRGQ------------YESFNLALWKLRDQVLSMNGASFSRTV-S 180
           P       N N   +  G             + SF   + KLR QV+SM     S T+ +
Sbjct: 450 PFMDSEAENENPPRAGPGSSPLFSLLPGYRGHPSFQSLVSKLRSQVMSMARPQLSHTILT 509

Query: 181 ERDWLKNSVKIWESVKSSPIVMEYARTL 189
           E++W   + +IW+ VK S  + EY+R L
Sbjct: 510 EKNWFHYAARIWDGVKKSSALAEYSRLL 519

[Close]

BLAST of Cla97C05G088690 vs. Swiss-Prot
Match: sp|Q2YDD2|SMG9_BOVIN (Protein SMG9 OS=Bos taurus OX=9913 GN=SMG9 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 5.7e-05
Identity = 47/209 (22.49%), Postives = 84/209 (40.19%), Query Frame = 0


Query: 1   MWHLMLTVDLLKHGLPDPSSPISSHPRNSNVASEREYKEKTSTSEEYMATPIFVHAKVQD 60
           ++  + T +++K     PS+P  SH  +S+  SE           EY    +F+  K + 
Sbjct: 330 LYRFLQTAEMVK-----PSTPSPSHESSSSSGSEE--------GAEYYPHLVFLQNKARR 389

Query: 61  RDLVPHNILQLKRAFTYYFKSSSFMGDKFEKVHSEQLLSSVVPDTRNLDVDGEDRRLLVI 120
            D  P  + Q+          S         +    +   + PD  + +V+     L ++
Sbjct: 390 EDFCPRKLRQMHLMIDQLMAHSHLRYKGTLSMLQCNVFPGLPPDFLDSEVN-----LFLM 449

Query: 121 PNRNKDDST--------------------RGQYESFNLALWKLRDQVLSMNGASFSRTV- 180
           P  + +  +                    RG + SF   + KLR QV+SM     S T+ 
Sbjct: 450 PFMDSETESETPPRAGPGSSPLFSLLPGYRG-HPSFQSLVSKLRSQVMSMARPQLSHTIL 509

Query: 181 SERDWLKNSVKIWESVKSSPIVMEYARTL 189
           +E++W   + +IW+ VK S  + EY+R L
Sbjct: 510 TEKNWFHYAARIWDGVKKSSALAEYSRLL 519

[Close]

BLAST of Cla97C05G088690 vs. Swiss-Prot
Match: sp|Q05AW9|SMG9_XENLA (Protein SMG9 OS=Xenopus laevis OX=8355 GN=smg9 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 5.7e-05
Identity = 48/203 (23.65%), Postives = 84/203 (41.38%), Query Frame = 0


Query: 1   MWHLMLTVDLLKHGLPDPSSPISSHPRNSNVASEREYKEKTSTSEEYMATPIFVHAKVQD 60
           ++  + T ++LK     PS+P  SH  + +  S+           EY    +FV  K + 
Sbjct: 319 LYRFLQTAEMLK-----PSTPSPSHESSGSSGSDE--------GIEYYPHIVFVQNKSKR 378

Query: 61  RDLVPHNILQLKRAFTYYFKSSS--------------FMGDKFEKVHSEQLLSSVVPDTR 120
            D  P  + Q+          S               F G  ++ V SE  L  +     
Sbjct: 379 EDFCPRTLKQMHTVMDKLMLHSHLRYKGTLSMLDCNIFPGLPYDFVESEVNLFLIPTMES 438

Query: 121 NLDVDGEDRRLLVIPNRNKDDSTRGQYESFNLALWKLRDQVLSMNGASFSRTV-SERDWL 180
           + D          IP  +   + +G + SF+  + +LR Q++SM+    S T+ +E++W 
Sbjct: 439 DADETISRAGTSGIPLFSLLPAYKG-HPSFHSLVSRLRSQIMSMSRPQLSHTILTEKNWF 498

Query: 181 KNSVKIWESVKSSPIVMEYARTL 189
             + +IW+ VK S  + EY+R L
Sbjct: 499 HYAARIWDGVKKSSALSEYSRLL 507

[Close]

BLAST of Cla97C05G088690 vs. Swiss-Prot
Match: sp|Q5PQS6|SMG9_RAT (Protein SMG9 OS=Rattus norvegicus OX=10116 GN=Smg9 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.8e-04
Identity = 44/203 (21.67%), Postives = 79/203 (38.92%), Query Frame = 0


Query: 1   MWHLMLTVDLLKHGLPDPSSPISSHPRNSNVASEREYKEKTSTSEEYMATPIFVHAKVQD 60
           ++  + T +++K     PS+P  SH  +S   S+           EY    +F+  K + 
Sbjct: 330 LYRFLQTAEMVK-----PSTPSPSHESSSAAGSDE--------GTEYYPHLVFLQNKARR 389

Query: 61  RDLVPHNILQLKRAFTYYFKSSSFMGDKFEKVHSEQLLSSVVPDTRNLDVDGEDRRLLVI 120
            D  P  + Q+          S         +    +   + PD  + +V+      +  
Sbjct: 390 EDFCPRKLRQMHLMIDQLMAHSHLRYKGTLSMLQCNIFPGLPPDFLDAEVNLFLVPFMDS 449

Query: 121 PNRNKDDSTRGQ--------------YESFNLALWKLRDQVLSMNGASFSRTV-SERDWL 180
              N++    G               + SF   + KLR QV+SM     S T+ +E++W 
Sbjct: 450 EAENENPPRAGPGSSPLFSLLPGYRGHPSFQSLVSKLRSQVMSMARPQLSHTILTEKNWF 509

Query: 181 KNSVKIWESVKSSPIVMEYARTL 189
             + +IW+ VK S  + EY+R L
Sbjct: 510 HYAARIWDGVKKSSALAEYSRLL 519

The following BLAST results are available for this feature:

BLAST of Cla97C05G088690 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147641.1	2.1e-101	95.41	PREDICTED: protein SMG9-like [Cucumis sativus] >KGN57223.1 hypothetical protein ...	[more]
XP_008439030.1	3.1e-100	93.88	PREDICTED: protein SMG9-like isoform X1 [Cucumis melo]	[more]
XP_016899123.1	2.7e-96	91.84	PREDICTED: protein SMG9-like isoform X2 [Cucumis melo]	[more]
XP_022137865.1	8.1e-93	88.27	protein SMG9-like [Momordica charantia]	[more]
XP_022935704.1	2.5e-89	86.73	protein SMG9-like [Cucurbita moschata]	[more]

BLAST of Cla97C05G088690 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L618\|A0A0A0L618_CUCSA	1.4e-101	95.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171800 PE=4 SV=1	[more]
tr\|A0A1S3AYF2\|A0A1S3AYF2_CUCME	2.0e-100	93.88	protein SMG9-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483940 PE=4 SV=1	[more]
tr\|A0A1S4DT40\|A0A1S4DT40_CUCME	1.8e-96	91.84	protein SMG9-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483940 PE=4 SV=1	[more]
tr\|A0A2P4ID91\|A0A2P4ID91_QUESU	9.3e-61	60.20	Protein smg9 OS=Quercus suber OX=58331 GN=CFP56_29290 PE=4 SV=1	[more]
tr\|A0A2I4EH73\|A0A2I4EH73_9ROSI	9.6e-58	58.16	protein SMG9-like isoform X1 OS=Juglans regia OX=51240 GN=LOC108989565 PE=4 SV=1	[more]

BLAST of Cla97C05G088690 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|B5DDX6\|SMG9_XENTR	1.1e-05	24.88	Protein SMG9 OS=Xenopus tropicalis OX=8364 GN=smg9 PE=2 SV=1	[more]
sp\|Q9DB90\|SMG9_MOUSE	2.0e-05	22.60	Protein SMG9 OS=Mus musculus OX=10090 GN=Smg9 PE=1 SV=1	[more]
sp\|Q2YDD2\|SMG9_BOVIN	5.7e-05	22.49	Protein SMG9 OS=Bos taurus OX=9913 GN=SMG9 PE=2 SV=1	[more]
sp\|Q05AW9\|SMG9_XENLA	5.7e-05	23.65	Protein SMG9 OS=Xenopus laevis OX=8355 GN=smg9 PE=2 SV=1	[more]
sp\|Q5PQS6\|SMG9_RAT	2.8e-04	21.67	Protein SMG9 OS=Rattus norvegicus OX=10116 GN=Smg9 PE=1 SV=1	[more]

BLAST of Cla97C05G088690 vs. TAIR10


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay

Vocabulary: **INTERPRO**
Term	Definition
IPR039177	SMG9

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G088690.1	Cla97C05G088690.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..38
IPR039177	Protein SMG9	PANTHER	PTHR14270	UNCHARACTERIZED	coord: 1..192

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G088690	Silver-seed gourd	carwmbB0287
Cla97C05G088690	Silver-seed gourd	carwmbB0720
Cla97C05G088690	Cucumber (Gy14) v2	cgybwmbB196
Cla97C05G088690	Cucumber (Gy14) v1	cgywmbB452
Cla97C05G088690	Cucurbita maxima (Rimu)	cmawmbB263
Cla97C05G088690	Cucurbita maxima (Rimu)	cmawmbB856
Cla97C05G088690	Cucurbita moschata (Rifu)	cmowmbB243
Cla97C05G088690	Cucurbita moschata (Rifu)	cmowmbB833
Cla97C05G088690	Wild cucumber (PI 183967)	cpiwmbB209
Cla97C05G088690	Cucumber (Chinese Long) v3	cucwmbB206
Cla97C05G088690	Cucumber (Chinese Long) v2	cuwmbB204
Cla97C05G088690	Bottle gourd (USVL1VR-Ls)	lsiwmbB334
Cla97C05G088690	Melon (DHL92) v3.6.1	medwmbB423
Cla97C05G088690	Melon (DHL92) v3.5.1	mewmbB434
Cla97C05G088690	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G088690	Watermelon (97103) v1	wmwmbB206
Cla97C05G088690	Wax gourd	wgowmbB178