Cla97C05G088480 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G088480
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Pre-mRNA splicing factor
Location	Cla97Chr05 : 6631629 .. 6632474 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGTAAGAGTAAAATATGAGTGCATATCTTAAAATGACTTTTGTTACTACTAAGCCCCATTCATATTGTTGAGAAAATGTATTATTTGCATAAAGCAAAACCCGAATATACAAGTATTAACGAGGCAATTACTTTTCTTCTTCAGAGGAAATTTTTAGGGTTAAACAGGTAGAAAGATGAATTATACTTGGTGCAGTGTTTTTGTTGGTTTTTCCGGACTAATTTTATAGGAAACATAGAAATAGGCTTTTTTGTCTCCTCTCTTTTTTTCTGTTTGATAGAATAAATAATGTTTTTTATTTTTACTTTTTCGAATTTGTGTATATAAACTTGACCCAGATTAATTCATTTTTAGGGATATGGCAATAAGAAAGAAGCTGTTATTTTGATGGCCAAGGTTAGCAAGAATGTCCAAATAGTGGCATATTGTGGGCAGCCTCAATAGACATGGTATTTCGTCCACAACGTAAAACCAAGAGCATTGATACGCTTAAAAATGTGATTATGATCCTCACCTTATTGCTGCTGTGGCCAAGTTGTTTTGGCATTACAGGAAGGTTGACATAGCTAGAACTTGGCCGAACAGGACGGTAACTCTTGCTCCAGGTGTTGGTGGTTTTTGGGCTTTATACTAAAAATTCAAACTTCAGCAGGGTACTAACGAGAATCAGAAGAACGTACTGAAGAGAGATGTGTTGATGCAACCCAAACATAGTGAGAAATGGCGAACAATTTCAAAGGCTATGGAGAACTTCCATCAATCGACTGAAGCAATCTTGAGAAAAGTAGTTGTTGCAGCACTAGGTAAGGAGGAGGGCACTGATGAAAATAGCGAAAATTAG

mRNA sequence

ATGAGTGGATATGGCAATAAGAAAGAAGCTGTTATTTTGATGGCCAAGGGTACTAACGAGAATCAGAAGAACGTACTGAAGAGAGATGTGTTGATGCAACCCAAACATAGTGAGAAATGGCGAACAATTTCAAAGGCTATGGAGAACTTCCATCAATCGACTGAAGCAATCTTGAGAAAAGTAGTTGTTGCAGCACTAGGTAAGGAGGAGGGCACTGATGAAAATAGCGAAAATTAG

Coding sequence (CDS)

ATGAGTGGATATGGCAATAAGAAAGAAGCTGTTATTTTGATGGCCAAGGGTACTAACGAGAATCAGAAGAACGTACTGAAGAGAGATGTGTTGATGCAACCCAAACATAGTGAGAAATGGCGAACAATTTCAAAGGCTATGGAGAACTTCCATCAATCGACTGAAGCAATCTTGAGAAAAGTAGTTGTTGCAGCACTAGGTAAGGAGGAGGGCACTGATGAAAATAGCGAAAATTAG

Protein sequence

MSGYGNKKEAVILMAKGTNENQKNVLKRDVLMQPKHSEKWRTISKAMENFHQSTEAILRKVVVAALGKEEGTDENSEN

Homology

[Close]

BLAST of Cla97C05G088480 vs. NCBI nr
Match: XP_022947634.1 (protein STABILIZED1 [Cucurbita moschata])

HSP 1 Score: 84.0 bits (206), Expect = 2.5e-13
Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 17   GTNENQKNVLKRDVLMQPKHSEKWRTISKAMENFHQSTEAILRKVVVAALGKEEGTDENS 76
            GT+ENQK+VLKR +  +PKH EKW+ ISKA+EN HQ TEAIL+KVVV ALGKEEG  ENS
Sbjct: 963  GTDENQKDVLKRCIAAEPKHGEKWQMISKAVENSHQPTEAILKKVVV-ALGKEEGAAENS 1022

Query: 77   EN 79
             N
Sbjct: 1023 RN 1023

[Close]

BLAST of Cla97C05G088480 vs. NCBI nr
Match: XP_022970703.1 (protein STABILIZED1 [Cucurbita maxima])

HSP 1 Score: 84.0 bits (206), Expect = 2.5e-13
Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 17   GTNENQKNVLKRDVLMQPKHSEKWRTISKAMENFHQSTEAILRKVVVAALGKEEGTDENS 76
            GT+ENQK+VLKR +  +PKH EKW+ ISKA+EN HQ TEAIL+KVVV ALGKEEG  ENS
Sbjct: 963  GTDENQKDVLKRCIAAEPKHGEKWQMISKAVENSHQPTEAILKKVVV-ALGKEEGAAENS 1022

Query: 77   EN 79
             N
Sbjct: 1023 RN 1023

[Close]

BLAST of Cla97C05G088480 vs. NCBI nr
Match: XP_023532967.1 (protein STABILIZED1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 84.0 bits (206), Expect = 2.5e-13
Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 17   GTNENQKNVLKRDVLMQPKHSEKWRTISKAMENFHQSTEAILRKVVVAALGKEEGTDENS 76
            GT+ENQK+VLKR +  +PKH EKW+ ISKA+EN HQ TEAIL+KVVV ALGKEEG  ENS
Sbjct: 963  GTDENQKDVLKRCIAAEPKHGEKWQMISKAVENSHQPTEAILKKVVV-ALGKEEGAAENS 1022

Query: 77   EN 79
             N
Sbjct: 1023 RN 1023

[Close]

BLAST of Cla97C05G088480 vs. NCBI nr
Match: XP_022140441.1 (protein STABILIZED1 [Momordica charantia])

HSP 1 Score: 83.6 bits (205), Expect = 3.3e-13
Identity = 43/62 (69.35%), Postives = 53/62 (85.48%), Query Frame = 0


Query: 17   GTNENQKNVLKRDVLMQPKHSEKWRTISKAMENFHQSTEAILRKVVVAALGKEEGTDENS 76
            GT+ENQK+VLKR +  +PKH EKW+TISKA+EN HQ TEAIL+K+VV ALGKEEG  ENS
Sbjct: 963  GTDENQKDVLKRCIAAEPKHGEKWQTISKAVENSHQPTEAILKKLVV-ALGKEEGAAENS 1022

Query: 77   EN 79
            ++
Sbjct: 1023 KH 1023

[Close]

BLAST of Cla97C05G088480 vs. NCBI nr
Match: ADN34237.1 (pre-mRNA splicing factor, partial [Cucumis melo subsp. melo])

HSP 1 Score: 82.0 bits (201), Expect = 9.7e-13
Identity = 42/62 (67.74%), Postives = 52/62 (83.87%), Query Frame = 0


Query: 17  GTNENQKNVLKRDVLMQPKHSEKWRTISKAMENFHQSTEAILRKVVVAALGKEEGTDENS 76
           G +ENQK+VLKR +  +PKH EKW+TISKA+EN HQ TE+IL+KVVV ALGKE+G  ENS
Sbjct: 667 GADENQKDVLKRCIAAEPKHGEKWQTISKAVENSHQPTESILKKVVV-ALGKEDGAVENS 726

Query: 77  EN 79
           +N
Sbjct: 727 KN 727

[Close]

BLAST of Cla97C05G088480 vs. TrEMBL
Match: tr|A0A1S3CAH3|A0A1S3CAH3_CUCME (protein STABILIZED1 OS=Cucumis melo OX=3656 GN=LOC103498810 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 6.4e-13
Identity = 42/62 (67.74%), Postives = 52/62 (83.87%), Query Frame = 0


Query: 17   GTNENQKNVLKRDVLMQPKHSEKWRTISKAMENFHQSTEAILRKVVVAALGKEEGTDENS 76
            G +ENQK+VLKR +  +PKH EKW+TISKA+EN HQ TE+IL+KVVV ALGKE+G  ENS
Sbjct: 963  GADENQKDVLKRCIAAEPKHGEKWQTISKAVENSHQPTESILKKVVV-ALGKEDGAVENS 1022

Query: 77   EN 79
            +N
Sbjct: 1023 KN 1023

[Close]

BLAST of Cla97C05G088480 vs. TrEMBL
Match: tr|E5GCN8|E5GCN8_CUCME (Pre-mRNA splicing factor (Fragment) OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 6.4e-13
Identity = 42/62 (67.74%), Postives = 52/62 (83.87%), Query Frame = 0


Query: 17  GTNENQKNVLKRDVLMQPKHSEKWRTISKAMENFHQSTEAILRKVVVAALGKEEGTDENS 76
           G +ENQK+VLKR +  +PKH EKW+TISKA+EN HQ TE+IL+KVVV ALGKE+G  ENS
Sbjct: 667 GADENQKDVLKRCIAAEPKHGEKWQTISKAVENSHQPTESILKKVVV-ALGKEDGAVENS 726

Query: 77  EN 79
           +N
Sbjct: 727 KN 727

[Close]

BLAST of Cla97C05G088480 vs. TrEMBL
Match: tr|A0A0A0KDS6|A0A0A0KDS6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G104100 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.9e-12
Identity = 42/62 (67.74%), Postives = 52/62 (83.87%), Query Frame = 0


Query: 17   GTNENQKNVLKRDVLMQPKHSEKWRTISKAMENFHQSTEAILRKVVVAALGKEEGTDENS 76
            G +ENQK+VLKR +  +PKH EKW+TISKA+EN HQ TE+IL+KVVV ALGKEEG  E+S
Sbjct: 963  GGDENQKDVLKRCIAAEPKHGEKWQTISKAVENSHQPTESILKKVVV-ALGKEEGAVESS 1022

Query: 77   EN 79
            +N
Sbjct: 1023 KN 1023

[Close]

BLAST of Cla97C05G088480 vs. TrEMBL
Match: tr|H6UJ39|H6UJ39_CAMSI (Putative pre-mRNA splicing factor OS=Camellia sinensis OX=4442 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.4e-12
Identity = 41/62 (66.13%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 17   GTNENQKNVLKRDVLMQPKHSEKWRTISKAMENFHQSTEAILRKVVVAALGKEEGTDENS 76
            GT ENQK+VLKR +  +PKH EKW+ ISKA+EN HQ TEAIL+KVV+ ALGKEE + ENS
Sbjct: 963  GTEENQKDVLKRCIAAEPKHGEKWQAISKAVENSHQPTEAILKKVVI-ALGKEESSAENS 1022

Query: 77   EN 79
            ++
Sbjct: 1023 KH 1023

[Close]

BLAST of Cla97C05G088480 vs. TrEMBL
Match: tr|A0A2C9US51|A0A2C9US51_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G148100 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.2e-12
Identity = 41/62 (66.13%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 17   GTNENQKNVLKRDVLMQPKHSEKWRTISKAMENFHQSTEAILRKVVVAALGKEEGTDENS 76
            GT ENQK+VLKR +  +PKH EKW+ ISKA+EN HQ TEAIL+KVVV ALGKEE  + N 
Sbjct: 970  GTEENQKDVLKRCIAAEPKHGEKWQAISKAVENAHQQTEAILKKVVV-ALGKEENAENNR 1029

Query: 77   EN 79
             N
Sbjct: 1030 HN 1030

[Close]

BLAST of Cla97C05G088480 vs. Swiss-Prot
Match: sp|Q9ZT71|STA1_ARATH (Protein STABILIZED1 OS=Arabidopsis thaliana OX=3702 GN=STA1 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-07
Identity = 29/56 (51.79%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 17   GTNENQKNVLKRDVLMQPKHSEKWRTISKAMENFHQSTEAILRKVVVAALGKEEGT 73
            G++E++K V+ + V  +PKH EKW+ ISKA+EN HQ  E IL++ VV AL KEE +
Sbjct: 974  GSDEDRKEVVAKCVACEPKHGEKWQAISKAVENAHQPIEVILKR-VVNALSKEENS 1028

[Close]

BLAST of Cla97C05G088480 vs. TAIR10
Match: AT4G03430.1 (pre-mRNA splicing factor-related)

HSP 1 Score: 56.6 bits (135), Expect = 7.9e-09
Identity = 29/56 (51.79%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 17   GTNENQKNVLKRDVLMQPKHSEKWRTISKAMENFHQSTEAILRKVVVAALGKEEGT 73
            G++E++K V+ + V  +PKH EKW+ ISKA+EN HQ  E IL++ VV AL KEE +
Sbjct: 974  GSDEDRKEVVAKCVACEPKHGEKWQAISKAVENAHQPIEVILKR-VVNALSKEENS 1028

The following BLAST results are available for this feature:

BLAST of Cla97C05G088480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947634.1	2.5e-13	70.97	protein STABILIZED1 [Cucurbita moschata]	[more]
XP_022970703.1	2.5e-13	70.97	protein STABILIZED1 [Cucurbita maxima]	[more]
XP_023532967.1	2.5e-13	70.97	protein STABILIZED1 [Cucurbita pepo subsp. pepo]	[more]
XP_022140441.1	3.3e-13	69.35	protein STABILIZED1 [Momordica charantia]	[more]
ADN34237.1	9.7e-13	67.74	pre-mRNA splicing factor, partial [Cucumis melo subsp. melo]	[more]

BLAST of Cla97C05G088480 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CAH3\|A0A1S3CAH3_CUCME	6.4e-13	67.74	protein STABILIZED1 OS=Cucumis melo OX=3656 GN=LOC103498810 PE=4 SV=1	[more]
tr\|E5GCN8\|E5GCN8_CUCME	6.4e-13	67.74	Pre-mRNA splicing factor (Fragment) OS=Cucumis melo subsp. melo OX=412675 PE=4 S...	[more]
tr\|A0A0A0KDS6\|A0A0A0KDS6_CUCSA	1.9e-12	67.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G104100 PE=4 SV=1	[more]
tr\|H6UJ39\|H6UJ39_CAMSI	2.4e-12	66.13	Putative pre-mRNA splicing factor OS=Camellia sinensis OX=4442 PE=2 SV=1	[more]
tr\|A0A2C9US51\|A0A2C9US51_MANES	3.2e-12	66.13	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G148100 PE=4 SV=...	[more]

BLAST of Cla97C05G088480 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ZT71\|STA1_ARATH	1.4e-07	51.79	Protein STABILIZED1 OS=Arabidopsis thaliana OX=3702 GN=STA1 PE=1 SV=1	[more]

BLAST of Cla97C05G088480 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G03430.1	7.9e-09	51.79	pre-mRNA splicing factor-related	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0006396	RNA processing

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G088480.1	Cla97C05G088480.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G088480	Wax gourd	wgowmbB178
Cla97C05G088480	Watermelon (97103) v2	wmbwmbB137
Cla97C05G088480	Silver-seed gourd	carwmbB0069
Cla97C05G088480	Silver-seed gourd	carwmbB0287
Cla97C05G088480	Silver-seed gourd	carwmbB0776
Cla97C05G088480	Cucumber (Gy14) v2	cgybwmbB196
Cla97C05G088480	Cucumber (Gy14) v1	cgywmbB452
Cla97C05G088480	Cucurbita maxima (Rimu)	cmawmbB263
Cla97C05G088480	Cucurbita maxima (Rimu)	cmawmbB366
Cla97C05G088480	Cucurbita maxima (Rimu)	cmawmbB856
Cla97C05G088480	Cucurbita moschata (Rifu)	cmowmbB243
Cla97C05G088480	Cucurbita moschata (Rifu)	cmowmbB351
Cla97C05G088480	Cucurbita moschata (Rifu)	cmowmbB833
Cla97C05G088480	Wild cucumber (PI 183967)	cpiwmbB209
Cla97C05G088480	Cucumber (Chinese Long) v3	cucwmbB206
Cla97C05G088480	Cucumber (Chinese Long) v2	cuwmbB204
Cla97C05G088480	Bottle gourd (USVL1VR-Ls)	lsiwmbB015
Cla97C05G088480	Bottle gourd (USVL1VR-Ls)	lsiwmbB334
Cla97C05G088480	Melon (DHL92) v3.6.1	medwmbB114
Cla97C05G088480	Melon (DHL92) v3.6.1	medwmbB423
Cla97C05G088480	Melon (DHL92) v3.5.1	mewmbB123
Cla97C05G088480	Melon (DHL92) v3.5.1	mewmbB434
Cla97C05G088480	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G088480	Watermelon (Charleston Gray)	wcgwmbB269
Cla97C05G088480	Watermelon (97103) v1	wmwmbB206
Cla97C05G088480	Wax gourd	wgowmbB076