Cla97C05G087450 (gene) Watermelon (97103) v2

Overview
NameCla97C05G087450
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionTranscription termination factor family protein
LocationCla97Chr05 : 5638742 .. 5639206 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTCAATCCTCTGCGATTGAAGTTTGTTCTTGCTGTTTTTGCTCCGCGAACAATGAGCAAATCTACATGGGATAAGAAGATTGGAGTTTATAGGAAATGGGGATGGCTTGAAGAAGAGATCCATTTGGCTTTTGGAAGGCATCCATGGTGTATGATGGCTTTTGAGGATGAGATTAATGGTGTAATGGATTTTTTTGTCAACAAGATTGGATGTGAATCTTCTTTCATTGCTAGGAGACCTACTCTAATTTCATTGAGTTTAAAGAAGAGGATTTTGCCTAGAGGCTCAATTTATCAAGTTTTGCTGTCAAAGGGTTTGATTAAGAAATATGTGAATCTTCCATTGTTGTTTGAGTGTACTGAAAACCGCTTCTTGGACAAATTCATCAACCCCTATAAGACGCGGATACCTGGATTACTGAAGTTGTATGAAGAGAAAGTAAAGGATTTTGAAAGATGA

mRNA sequence

ATGGGATTCAATCCTCTGCGATTGAAGTTTGTTCTTGCTGTTTTTGCTCCGCGAACAATGAGCAAATCTACATGGGATAAGAAGATTGGAGTTTATAGGAAATGGGGATGGCTTGAAGAAGAGATCCATTTGGCTTTTGGAAGGCATCCATGGTGTATGATGGCTTTTGAGGATGAGATTAATGGTGTAATGGATTTTTTTGTCAACAAGATTGGATGTGAATCTTCTTTCATTGCTAGGAGACCTACTCTAATTTCATTGAGTTTAAAGAAGAGGATTTTGCCTAGAGGCTCAATTTATCAAGTTTTGCTGTCAAAGGGTTTGATTAAGAAATATGTGAATCTTCCATTGTTGTTTGAGTGTACTGAAAACCGCTTCTTGGACAAATTCATCAACCCCTATAAGACGCGGATACCTGGATTACTGAAGTTGTATGAAGAGAAAGTAAAGGATTTTGAAAGATGA

Coding sequence (CDS)

ATGGGATTCAATCCTCTGCGATTGAAGTTTGTTCTTGCTGTTTTTGCTCCGCGAACAATGAGCAAATCTACATGGGATAAGAAGATTGGAGTTTATAGGAAATGGGGATGGCTTGAAGAAGAGATCCATTTGGCTTTTGGAAGGCATCCATGGTGTATGATGGCTTTTGAGGATGAGATTAATGGTGTAATGGATTTTTTTGTCAACAAGATTGGATGTGAATCTTCTTTCATTGCTAGGAGACCTACTCTAATTTCATTGAGTTTAAAGAAGAGGATTTTGCCTAGAGGCTCAATTTATCAAGTTTTGCTGTCAAAGGGTTTGATTAAGAAATATGTGAATCTTCCATTGTTGTTTGAGTGTACTGAAAACCGCTTCTTGGACAAATTCATCAACCCCTATAAGACGCGGATACCTGGATTACTGAAGTTGTATGAAGAGAAAGTAAAGGATTTTGAAAGATGA

Protein sequence

MGFNPLRLKFVLAVFAPRTMSKSTWDKKIGVYRKWGWLEEEIHLAFGRHPWCMMAFEDEINGVMDFFVNKIGCESSFIARRPTLISLSLKKRILPRGSIYQVLLSKGLIKKYVNLPLLFECTENRFLDKFINPYKTRIPGLLKLYEEKVKDFER
Homology
[Close]
BLAST of Cla97C05G087450 vs. NCBI nr
Match: XP_022956116.1 (uncharacterized protein LOC111457902 isoform X2 [Cucurbita moschata])

HSP 1 Score: 254.2 bits (648), Expect = 2.8e-64
Identity = 122/154 (79.22%), Postives = 135/154 (87.66%), Query Frame = 0 

Query: 1   MGFNPLRLKFVLAVFAPRTMSKSTWDKKIGVYRKWGWLEEEIHLAFGRHPWCMMAFEDEI 60
           MGFNPLRL FVLAVFA R MSKSTW KK+ VY+KWGW EEEI  AF RHPWCMMA ED+I
Sbjct: 211 MGFNPLRLNFVLAVFAMRAMSKSTWRKKVEVYKKWGWPEEEILSAFRRHPWCMMASEDKI 270

Query: 61  NGVMDFFVNKIGCESSFIARRPTLISLSLKKRILPRGSIYQVLLSKGLIKKYVNLPLLFE 120
           NGVMDFFVNKIGCE S+IA+RP LISLSLKKRI+PRGS+YQVLLSKGLIKK VNLP LFE
Sbjct: 271 NGVMDFFVNKIGCEPSYIAKRPALISLSLKKRIVPRGSVYQVLLSKGLIKKDVNLPFLFE 330

Query: 121 CTENRFLDKFINPYKTRIPGLLKLYEEKVKDFER 155
             ENRFLDKFI+P+K  IPGLLKLY+EK++D +R
Sbjct: 331 SAENRFLDKFIDPHKELIPGLLKLYKEKLEDSKR 364

[Close]
BLAST of Cla97C05G087450 vs. NCBI nr
Match: XP_022933338.1 (uncharacterized protein LOC111440613 isoform X1 [Cucurbita moschata])

HSP 1 Score: 254.2 bits (648), Expect = 2.8e-64
Identity = 122/154 (79.22%), Postives = 135/154 (87.66%), Query Frame = 0 

Query: 1   MGFNPLRLKFVLAVFAPRTMSKSTWDKKIGVYRKWGWLEEEIHLAFGRHPWCMMAFEDEI 60
           MGFNPLRL FVLAVFA R MSKSTW KK+ VY+KWGW EEEI  AF RHPWCMMA ED+I
Sbjct: 306 MGFNPLRLNFVLAVFAMRAMSKSTWRKKVEVYKKWGWPEEEILSAFRRHPWCMMASEDKI 365

Query: 61  NGVMDFFVNKIGCESSFIARRPTLISLSLKKRILPRGSIYQVLLSKGLIKKYVNLPLLFE 120
           NGVMDFFVNKIGCE S+IA+RP LISLSLKKRI+PRGS+YQVLLSKGLIKK VNLP LFE
Sbjct: 366 NGVMDFFVNKIGCEPSYIAKRPALISLSLKKRIVPRGSVYQVLLSKGLIKKDVNLPFLFE 425

Query: 121 CTENRFLDKFINPYKTRIPGLLKLYEEKVKDFER 155
             ENRFLDKFI+P+K  IPGLLKLY+EK++D +R
Sbjct: 426 SAENRFLDKFIDPHKELIPGLLKLYKEKLEDSKR 459

[Close]
BLAST of Cla97C05G087450 vs. NCBI nr
Match: XP_022933339.1 (uncharacterized protein LOC111440613 isoform X2 [Cucurbita moschata])

HSP 1 Score: 254.2 bits (648), Expect = 2.8e-64
Identity = 122/154 (79.22%), Postives = 135/154 (87.66%), Query Frame = 0 

Query: 1   MGFNPLRLKFVLAVFAPRTMSKSTWDKKIGVYRKWGWLEEEIHLAFGRHPWCMMAFEDEI 60
           MGFNPLRL FVLAVFA R MSKSTW KK+ VY+KWGW EEEI  AF RHPWCMMA ED+I
Sbjct: 305 MGFNPLRLNFVLAVFAMRAMSKSTWRKKVEVYKKWGWPEEEILSAFRRHPWCMMASEDKI 364

Query: 61  NGVMDFFVNKIGCESSFIARRPTLISLSLKKRILPRGSIYQVLLSKGLIKKYVNLPLLFE 120
           NGVMDFFVNKIGCE S+IA+RP LISLSLKKRI+PRGS+YQVLLSKGLIKK VNLP LFE
Sbjct: 365 NGVMDFFVNKIGCEPSYIAKRPALISLSLKKRIVPRGSVYQVLLSKGLIKKDVNLPFLFE 424

Query: 121 CTENRFLDKFINPYKTRIPGLLKLYEEKVKDFER 155
             ENRFLDKFI+P+K  IPGLLKLY+EK++D +R
Sbjct: 425 SAENRFLDKFIDPHKELIPGLLKLYKEKLEDSKR 458

[Close]
BLAST of Cla97C05G087450 vs. NCBI nr
Match: XP_022979833.1 (uncharacterized protein LOC111479414 [Cucurbita maxima])

HSP 1 Score: 251.5 bits (641), Expect = 1.8e-63
Identity = 120/154 (77.92%), Postives = 134/154 (87.01%), Query Frame = 0 

Query: 1   MGFNPLRLKFVLAVFAPRTMSKSTWDKKIGVYRKWGWLEEEIHLAFGRHPWCMMAFEDEI 60
           MGFNPLRL FVLAVFA R MSKSTW KK+ VY+KWGW EEEI  AF RHPWCMMA ED+I
Sbjct: 211 MGFNPLRLNFVLAVFAMRAMSKSTWRKKVEVYKKWGWPEEEILFAFRRHPWCMMASEDKI 270

Query: 61  NGVMDFFVNKIGCESSFIARRPTLISLSLKKRILPRGSIYQVLLSKGLIKKYVNLPLLFE 120
           NGVMDFFVNK+GCE S+IA+RP LISLSLKKRI+PRGS+YQVLLSKGLIKK VNLP LFE
Sbjct: 271 NGVMDFFVNKLGCEPSYIAKRPALISLSLKKRIVPRGSVYQVLLSKGLIKKDVNLPFLFE 330

Query: 121 CTENRFLDKFINPYKTRIPGLLKLYEEKVKDFER 155
             ENRFLDKFI+P+K  IPGLLKLY++K+ D +R
Sbjct: 331 SAENRFLDKFIDPHKKLIPGLLKLYKKKLVDAKR 364

[Close]
BLAST of Cla97C05G087450 vs. NCBI nr
Match: XP_022973791.1 (transcription termination factor MTERF5, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 251.1 bits (640), Expect = 2.4e-63
Identity = 121/150 (80.67%), Postives = 132/150 (88.00%), Query Frame = 0 

Query: 1   MGFNPLRLKFVLAVFAPRTMSKSTWDKKIGVYRKWGWLEEEIHLAFGRHPWCMMAFEDEI 60
           MGFNPLRLKFVLAVFA R MSKSTW KK+ VYRKWGW EEEI  AFGRHPWCMMA  D+I
Sbjct: 210 MGFNPLRLKFVLAVFALRAMSKSTWKKKVEVYRKWGWPEEEILFAFGRHPWCMMASADKI 269

Query: 61  NGVMDFFVNKIGCESSFIARRPTLISLSLKKRILPRGSIYQVLLSKGLIKKYVNLPLLFE 120
           NGVMDFFVN+IGCESS+IAR P+LIS SLKKRI+PRGS+YQVLLS GLIKK+VNLPLLF 
Sbjct: 270 NGVMDFFVNQIGCESSYIARIPSLISHSLKKRIVPRGSVYQVLLSNGLIKKHVNLPLLFV 329

Query: 121 CTENRFLDKFINPYKTRIPGLLKLYEEKVK 151
            TE RFLDKFI P+K RIPGLLKLY EK++
Sbjct: 330 STEKRFLDKFIEPHKKRIPGLLKLYTEKLE 359

[Close]
BLAST of Cla97C05G087450 vs. TrEMBL
Match: tr|A0A1S4DSN7|A0A1S4DSN7_CUCME (uncharacterized protein LOC107990329 OS=Cucumis melo OX=3656 GN=LOC107990329 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 2.3e-59
Identity = 111/154 (72.08%), Postives = 128/154 (83.12%), Query Frame = 0 

Query: 1   MGFNPLRLKFVLAVFAPRTMSKSTWDKKIGVYRKWGWLEEEIHLAFGRHPWCMMAFEDEI 60
           MGFNP RL+F++AVFA R M+KSTWDKK+ VYRKWG  EEEI LAF RHPWCMM  ED+I
Sbjct: 101 MGFNPQRLQFLVAVFALRAMTKSTWDKKVEVYRKWGLSEEEICLAFKRHPWCMMVSEDKI 160

Query: 61  NGVMDFFVNKIGCESSFIARRPTLISLSLKKRILPRGSIYQVLLSKGLIKKYVNLPLLFE 120
           NG MDFFVNKIGCESSF+ARRP LISLSLKKR+ PRG +YQVLL KGLIKK  N+PL   
Sbjct: 161 NGAMDFFVNKIGCESSFVARRPALISLSLKKRLNPRGYVYQVLLEKGLIKKQTNIPLFVS 220

Query: 121 CTENRFLDKFINPYKTRIPGLLKLYEEKVKDFER 155
            +ENRF+DKFINP+K +IPGLL+ YE+K+ D  R
Sbjct: 221 SSENRFIDKFINPHKEKIPGLLESYEQKLMDSRR 254

[Close]
BLAST of Cla97C05G087450 vs. TrEMBL
Match: tr|A0A1S3AYM0|A0A1S3AYM0_CUCME (uncharacterized protein LOC103484197 OS=Cucumis melo OX=3656 GN=LOC103484197 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 6.4e-57
Identity = 109/155 (70.32%), Postives = 128/155 (82.58%), Query Frame = 0 

Query: 1   MGFNPLRLKFVLAVFAPRTMSKSTWDKKIGVYRKWGWLEEEIHLAFGRHPWCMMAFEDEI 60
           MGFNP RL+F++AVFA R M+KSTWDKK+ VYRKWG  EEEI LAF RHPWCMM  ED+I
Sbjct: 212 MGFNPQRLQFLVAVFALRAMTKSTWDKKVEVYRKWGLSEEEICLAFKRHPWCMMVSEDKI 271

Query: 61  NGVMDFFVNKIGCESSFIARRPTLISLSLKKRILPRGSIYQVLLSKGLIKKYVNLPLLFE 120
           NG MDFFVNKIGCESSF+ARRP LISLSLKKR+ PRG +YQVLL KGLIKK  N+PL   
Sbjct: 272 NGAMDFFVNKIGCESSFVARRPALISLSLKKRLNPRGYVYQVLLEKGLIKKQANIPLFVS 331

Query: 121 CTENRFLDKFINPYK-TRIPGLLKLYEEKVKDFER 155
            +E RF++KFINP+K  +IPGLL+LY++K+ D  R
Sbjct: 332 SSEKRFIEKFINPHKEEQIPGLLELYKQKLMDSRR 366

[Close]
BLAST of Cla97C05G087450 vs. TrEMBL
Match: tr|A0A1S4DSP1|A0A1S4DSP1_CUCME (uncharacterized protein LOC107990398 OS=Cucumis melo OX=3656 GN=LOC107990398 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 2.4e-56
Identity = 107/154 (69.48%), Postives = 127/154 (82.47%), Query Frame = 0 

Query: 1   MGFNPLRLKFVLAVFAPRTMSKSTWDKKIGVYRKWGWLEEEIHLAFGRHPWCMMAFEDEI 60
           MGFNP +L+FV+AVFA R M+KSTWDKK+ VYRKWG  EEEI L F RHPWCM+  ED+I
Sbjct: 211 MGFNPQQLQFVVAVFALRAMTKSTWDKKVEVYRKWGLSEEEIRLVFKRHPWCMVVSEDKI 270

Query: 61  NGVMDFFVNKIGCESSFIARRPTLISLSLKKRILPRGSIYQVLLSKGLIKKYVNLPLLFE 120
           NG MDFFVNKIGCESSF+ARRP LISLSLKKR+ PRG +YQVLL+KGLIKK+ NL   FE
Sbjct: 271 NGAMDFFVNKIGCESSFVARRPALISLSLKKRLNPRGYVYQVLLAKGLIKKHQNLVSFFE 330

Query: 121 CTENRFLDKFINPYKTRIPGLLKLYEEKVKDFER 155
             E RF++K INP+K +IP LL+LYE+K+ D+ R
Sbjct: 331 FPEKRFIEKIINPHKEQIPVLLELYEKKLMDYGR 364

[Close]
BLAST of Cla97C05G087450 vs. TrEMBL
Match: tr|A0A1S3AZA9|A0A1S3AZA9_CUCME (uncharacterized protein LOC103484198 OS=Cucumis melo OX=3656 GN=LOC103484198 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 2.4e-56
Identity = 108/154 (70.13%), Postives = 128/154 (83.12%), Query Frame = 0 

Query: 1   MGFNPLRLKFVLAVFAPRTMSKSTWDKKIGVYRKWGWLEEEIHLAFGRHPWCMMAFEDEI 60
           MGFNP +++F++AVFA R+M+KSTWDKK+ VYRKWG  EEE+ LAF R+PWCM+A ED+I
Sbjct: 98  MGFNPQQMQFLVAVFALRSMTKSTWDKKVEVYRKWGLSEEEVRLAFRRYPWCMIASEDKI 157

Query: 61  NGVMDFFVNKIGCESSFIARRPTLISLSLKKRILPRGSIYQVLLSKGLIKKYVNLPLLFE 120
           N VMDFFVNKIGCESSF ARRP LI  SLKKRILPRG +YQVLLSKGLIK + NL L FE
Sbjct: 158 NDVMDFFVNKIGCESSFAARRPILIYRSLKKRILPRGYVYQVLLSKGLIKNHKNLVLFFE 217

Query: 121 CTENRFLDKFINPYKTRIPGLLKLYEEKVKDFER 155
             E  F++KFINP+K +IPGLL+LYEEK+ D  R
Sbjct: 218 SPEKPFIEKFINPHKEQIPGLLELYEEKLMDSRR 251

[Close]
BLAST of Cla97C05G087450 vs. TrEMBL
Match: tr|A0A1S4DSR4|A0A1S4DSR4_CUCME (uncharacterized protein LOC103483819 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103483819 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.2e-55
Identity = 103/154 (66.88%), Postives = 128/154 (83.12%), Query Frame = 0 

Query: 1   MGFNPLRLKFVLAVFAPRTMSKSTWDKKIGVYRKWGWLEEEIHLAFGRHPWCMMAFEDEI 60
           MGFNP +L+FV+AVF  R+++KSTWDKK+ VYRKWG  EEEI LAF RHPWCMM  ED+I
Sbjct: 212 MGFNPQQLQFVVAVFILRSLTKSTWDKKVEVYRKWGLSEEEICLAFKRHPWCMMVSEDKI 271

Query: 61  NGVMDFFVNKIGCESSFIARRPTLISLSLKKRILPRGSIYQVLLSKGLIKKYVNLPLLFE 120
           NGVMDFFVNKIGCESSF+A RP LISLSLKKRI PRG +YQVLL+KGLIKK+ ++ +  +
Sbjct: 272 NGVMDFFVNKIGCESSFVASRPVLISLSLKKRIFPRGYVYQVLLAKGLIKKHADITMFVK 331

Query: 121 CTENRFLDKFINPYKTRIPGLLKLYEEKVKDFER 155
           C+E  F++K I+P+K +IPGLL+ YE+K+ D  R
Sbjct: 332 CSEKHFIEKIIDPHKEQIPGLLESYEQKLMDSRR 365

[Close]
BLAST of Cla97C05G087450 vs. TAIR10
Match: AT5G07900.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 127.5 bits (319), Expect = 7.2e-30
Identity = 64/146 (43.84%), Postives = 93/146 (63.70%), Query Frame = 0 

Query: 1   MGFNPLRLKFVLAVFA-PRTMSKSTWDKKIGVYRKWGWLEEEIHLAFGRHPWCMMAFEDE 60
           MGFNP +  FVLA+ A     +KS WDK   VY++WGW E++I  AF +HP CMM  E +
Sbjct: 254 MGFNPQKSTFVLAIHALSGKGNKSIWDKCFEVYQRWGWSEDDIMCAFKKHPHCMMLSERK 313

Query: 61  INGVMDFFVNKIGCESSFIARRPTLISLSLKKRILPRGSIYQVLLSKGLIKKYVNLPLLF 120
           IN  M++FVN++      IA+ P ++  SL+KRI+PR S+ +VL+S GL+K+  +L  L 
Sbjct: 314 INRTMEYFVNEMNMAPRSIAQCPVVLFFSLEKRIIPRCSVTKVLVSNGLVKEDWSLTSLL 373

Query: 121 ECTENRFLDKFINPYKTRIPGLLKLY 146
              E  FL+K +  Y+  +P L+ LY
Sbjct: 374 VPVEKVFLEKLVIKYEEELPELMNLY 399

[Close]
BLAST of Cla97C05G087450 vs. TAIR10
Match: AT1G21150.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 99.8 bits (247), Expect = 1.6e-21
Identity = 49/143 (34.27%), Postives = 87/143 (60.84%), Query Frame = 0 

Query: 2   GFNPLRLKFVLAVFAPRTMSKSTWDKKIGVYRKWGWLEEEIHLAFGRHPWCMMAFEDEIN 61
           GF+P +  FV A+ A    S+S  ++K  +++ +GW +E+   A  R P C+   +++I 
Sbjct: 242 GFDPKKAGFVHAMVAFDCTSESAMERKFKLFQCFGWSKEDFVAAIMRFPNCVTVSDEKIM 301

Query: 62  GVMDFFVNKIGCESSFIARRPTLISLSLKKRILPRGSIYQVLLSKGLIKKY-VNLPLLFE 121
             +++ VN IG ++  I  RP ++SLS++KRI PR  +  +LLSKGL+KK  +N   + +
Sbjct: 302 YTLEYLVNNIGLQARDIVARPVVLSLSMEKRIKPRNQVISLLLSKGLVKKEDINYFTILK 361

Query: 122 CTENRFLDKFINPYKTRIPGLLK 144
              + F+DKF+  Y+  +P L++
Sbjct: 362 LKSSEFMDKFVLKYQDEMPQLVQ 384

[Close]
BLAST of Cla97C05G087450 vs. TAIR10
Match: AT5G64950.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 82.4 bits (202), Expect = 2.6e-16
Identity = 43/135 (31.85%), Postives = 79/135 (58.52%), Query Frame = 0 

Query: 1   MGFNPLRLKFVLAVFAPRTMSKSTWDKKIGVYRKWGWLEEEIHLAFGRHPWCMMAFEDEI 60
           +GF       V AV +  ++S+ T+D+K+ ++   G+ E+EI     R P  +   ED++
Sbjct: 226 LGFTLNSRMLVHAVISLSSLSEKTFDRKVKLFMANGFSEDEITDIIRRSPGLIRCSEDKL 285

Query: 61  NGVMDFFVNKIGCESSFIARRPTLISLSLKKRILPRGSIYQVLLSKGLI----KKYVNLP 120
               +F++ ++G E   +A+RP ++S +L+KR++PR  + Q+L  KGL+    KK  N+ 
Sbjct: 286 TLGFEFYLKRMGLEREALAKRPCVLSYNLEKRVIPRLKVLQILREKGLLLKEEKKKKNMV 345

Query: 121 LLFECTENRFLDKFI 132
            + E TE  FL+K++
Sbjct: 346 GIVEMTEEAFLEKYV 360

[Close]
BLAST of Cla97C05G087450 vs. TAIR10
Match: AT1G61990.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 75.1 bits (183), Expect = 4.2e-14
Identity = 47/183 (25.68%), Postives = 84/183 (45.90%), Query Frame = 0 

Query: 1   MGFNPLRLKFVLAVFAPRTMSKSTWDKKIGVYRKWGWLEEEIHLAF-------------- 60
           MGF+P   KFVLA+     MS+ T ++K+ V+R  G+  +++   F              
Sbjct: 226 MGFDPTTTKFVLALRMLYQMSEKTIEEKVVVFRSLGFTVDDVWEIFKKTPSVLKVSKKKI 285

Query: 61  ---------------------GRHPWCMMAFEDEINGVMDFFVNKIGCESSFIARRPTLI 120
                                 R+P C+    + +    +F V K+    + +   P + 
Sbjct: 286 LKSAETFLDLGYSRAEFLMMVKRYPPCIEYSVESVKKKNEFLVKKMKWPRNALVLHPQVF 345

Query: 121 SLSLKKRILPRGSIYQVLLSKGLIKKYVNLPL---LFECTENRFLDKFINPYKTRIPGLL 146
             S++KRI+PR +I + LLSKGL++K   LP    +  CT+  FLD+++  +   +P L+
Sbjct: 346 GYSMEKRIIPRCNILEALLSKGLLRKGSELPAVSSVLSCTDEGFLDRYVMKHNELVPTLM 405

[Close]
BLAST of Cla97C05G087450 vs. TAIR10
Match: AT1G61980.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 62.0 bits (149), Expect = 3.7e-10
Identity = 41/173 (23.70%), Postives = 76/173 (43.93%), Query Frame = 0 

Query: 1   MGFNPLRLKFVLAVFAPRTMSKSTWDKKIGVYRKWGWLEEEIHLAFGRHPWCMMAFEDEI 60
           MGF+P   KFV A+   + +S    + K+  Y++ G+  E +   F R P  +   E +I
Sbjct: 233 MGFDPSTSKFVEALCVVQRLSDKNIEDKVNAYKRLGFDVEYVWTVFKRWPNFLTHSEKKI 292

Query: 61  NGVM-----------------------------------DFFVNKIGCESSFIARRPTLI 120
              +                                   +F V K+      +   P ++
Sbjct: 293 LNTIETFLGLGFSRDEFSVLIKRFPQGIGLSAEMVKKKTEFLVKKMNWPLKALVSNPAVL 352

Query: 121 SLSLKKRILPRGSIYQVLLSKGLI-KKYVNLPLLFECTENRFLDKFINPYKTR 138
             SL+KR +PRG++ Q L+SKGLI  +  ++  +F CT+  FL++++  ++ +
Sbjct: 353 GYSLEKRTVPRGNVVQALISKGLIGSELPSISRVFVCTDQVFLNRYVKRHEDK 405

The following BLAST results are available for this feature:
BLAST of Cla97C05G087450 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022956116.12.8e-6479.22uncharacterized protein LOC111457902 isoform X2 [Cucurbita moschata][more]
XP_022933338.12.8e-6479.22uncharacterized protein LOC111440613 isoform X1 [Cucurbita moschata][more]
XP_022933339.12.8e-6479.22uncharacterized protein LOC111440613 isoform X2 [Cucurbita moschata][more]
XP_022979833.11.8e-6377.92uncharacterized protein LOC111479414 [Cucurbita maxima][more]
XP_022973791.12.4e-6380.67transcription termination factor MTERF5, chloroplastic-like [Cucurbita maxima][more]
BLAST of Cla97C05G087450 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DSN7|A0A1S4DSN7_CUCME2.3e-5972.08uncharacterized protein LOC107990329 OS=Cucumis melo OX=3656 GN=LOC107990329 PE=... [more]
tr|A0A1S3AYM0|A0A1S3AYM0_CUCME6.4e-5770.32uncharacterized protein LOC103484197 OS=Cucumis melo OX=3656 GN=LOC103484197 PE=... [more]
tr|A0A1S4DSP1|A0A1S4DSP1_CUCME2.4e-5669.48uncharacterized protein LOC107990398 OS=Cucumis melo OX=3656 GN=LOC107990398 PE=... [more]
tr|A0A1S3AZA9|A0A1S3AZA9_CUCME2.4e-5670.13uncharacterized protein LOC103484198 OS=Cucumis melo OX=3656 GN=LOC103484198 PE=... [more]
tr|A0A1S4DSR4|A0A1S4DSR4_CUCME1.2e-5566.88uncharacterized protein LOC103483819 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... [more]
BLAST of Cla97C05G087450 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C05G087450 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G07900.17.2e-3043.84Mitochondrial transcription termination factor family protein[more]
AT1G21150.11.6e-2134.27Mitochondrial transcription termination factor family protein[more]
AT5G64950.12.6e-1631.85Mitochondrial transcription termination factor family protein[more]
AT1G61990.14.2e-1425.68Mitochondrial transcription termination factor family protein[more]
AT1G61980.13.7e-1023.70Mitochondrial transcription termination factor family protein[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003690double-stranded DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003690 double-stranded DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G087450.1Cla97C05G087450.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3DG3DSA:1.25.70.10coord: 3..137
e-value: 3.0E-9
score: 38.4
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 20..127
e-value: 6.3E-11
score: 41.7
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 1..150
NoneNo IPR availablePANTHERPTHR13068:SF45SUBFAMILY NOT NAMEDcoord: 1..150

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C05G087450Watermelon (97103) v2wmbwmbB137
Cla97C05G087450Watermelon (97103) v2wmbwmbB155
Cla97C05G087450Silver-seed gourdcarwmbB0069
Cla97C05G087450Silver-seed gourdcarwmbB0113
Cla97C05G087450Silver-seed gourdcarwmbB0631
Cla97C05G087450Silver-seed gourdcarwmbB0867
Cla97C05G087450Cucumber (Gy14) v2cgybwmbB061
Cla97C05G087450Cucumber (Gy14) v2cgybwmbB196
Cla97C05G087450Cucumber (Gy14) v2cgybwmbB445
Cla97C05G087450Cucumber (Gy14) v2cgybwmbB510
Cla97C05G087450Cucumber (Gy14) v1cgywmbB311
Cla97C05G087450Cucumber (Gy14) v1cgywmbB452
Cla97C05G087450Cucurbita maxima (Rimu)cmawmbB263
Cla97C05G087450Cucurbita maxima (Rimu)cmawmbB366
Cla97C05G087450Cucurbita maxima (Rimu)cmawmbB368
Cla97C05G087450Cucurbita maxima (Rimu)cmawmbB856
Cla97C05G087450Cucurbita maxima (Rimu)cmawmbB914
Cla97C05G087450Cucurbita moschata (Rifu)cmowmbB243
Cla97C05G087450Cucurbita moschata (Rifu)cmowmbB351
Cla97C05G087450Cucurbita moschata (Rifu)cmowmbB353
Cla97C05G087450Cucurbita moschata (Rifu)cmowmbB833
Cla97C05G087450Cucurbita moschata (Rifu)cmowmbB887
Cla97C05G087450Wild cucumber (PI 183967)cpiwmbB209
Cla97C05G087450Wild cucumber (PI 183967)cpiwmbB494
Cla97C05G087450Wild cucumber (PI 183967)cpiwmbB564
Cla97C05G087450Cucumber (Chinese Long) v3cucwmbB206
Cla97C05G087450Cucumber (Chinese Long) v3cucwmbB485
Cla97C05G087450Cucumber (Chinese Long) v2cuwmbB204
Cla97C05G087450Cucumber (Chinese Long) v2cuwmbB467
Cla97C05G087450Cucumber (Chinese Long) v2cuwmbB539
Cla97C05G087450Bottle gourd (USVL1VR-Ls)lsiwmbB015
Cla97C05G087450Bottle gourd (USVL1VR-Ls)lsiwmbB188
Cla97C05G087450Bottle gourd (USVL1VR-Ls)lsiwmbB330
Cla97C05G087450Melon (DHL92) v3.6.1medwmbB114
Cla97C05G087450Melon (DHL92) v3.6.1medwmbB246
Cla97C05G087450Melon (DHL92) v3.6.1medwmbB423
Cla97C05G087450Melon (DHL92) v3.5.1mewmbB123
Cla97C05G087450Melon (DHL92) v3.5.1mewmbB260
Cla97C05G087450Melon (DHL92) v3.5.1mewmbB434
Cla97C05G087450Watermelon (Charleston Gray)wcgwmbB022
Cla97C05G087450Watermelon (Charleston Gray)wcgwmbB189
Cla97C05G087450Watermelon (Charleston Gray)wcgwmbB229
Cla97C05G087450Watermelon (Charleston Gray)wcgwmbB269
Cla97C05G087450Watermelon (97103) v1wmwmbB027
Cla97C05G087450Watermelon (97103) v1wmwmbB136
Cla97C05G087450Watermelon (97103) v1wmwmbB206
Cla97C05G087450Watermelon (97103) v1wmwmbB402
Cla97C05G087450Wax gourdwgowmbB079
Cla97C05G087450Wax gourdwgowmbB178