Cla97C05G086310 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G086310
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Pre-rRNA-processing protein TSR2
Location	Cla97Chr05 : 4736162 .. 4736700 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCAATTGATGGATTAGCCTCAACCAATTACAAGGCGGGATCTCTCTCCAGCCTCCAAATGGCCATTTCGTCCGTGTTTTCTCGGTGGGACGGCCTTCAAATGGCCATTGAAAATCGATGGGGAGGTCGCGACTCTCATCAGAAATCTCTGAATCTCGCCTCTGATGTCTTCTCTTGGTTCTCTCAATCCAAACGTTATTATCCTTCTTCCTTAAATTATCATCCGCCATTAAAATTAACCTTCTGCAATTTCTTGATGTATGTGTTTTGTTTCCAATAATTGCAGCTCCTTTATACGTGGAAGATCTGGAAAATTTGCTCCATGAAACCCTGTTGCTCTCCTTCAACACCGAGATTGAAGATGGCAGCATCGAACAGGTAAAAATTCCCATGACCAATTGTTGGGGTTACGCTACACAACATTGAAATTACAATCAATTTGAACAGAGAAGTTGATGTTTTGGATGAAAATTCGAGCAGGTAGCAGAACACTTGATGATGATATACGAAGAAAATTTGGTGGGAAGTCGTTAG

mRNA sequence

ATGGAGTCAATTGATGGATTAGCCTCAACCAATTACAAGGCGGGATCTCTCTCCAGCCTCCAAATGGCCATTTCGTCCGTGTTTTCTCGGTGGGACGGCCTTCAAATGGCCATTGAAAATCGATGGGGAGGTCGCGACTCTCATCAGAAATCTCTGAATCTCGCCTCTGATGTCTTCTCTTGGTTCTCTCAATCCAAACCTCCTTTATACGTGGAAGATCTGGAAAATTTGCTCCATGAAACCCTGTTGCTCTCCTTCAACACCGAGATTGAAGATGGCAGCATCGAACAGGTAGCAGAACACTTGATGATGATATACGAAGAAAATTTGGTGGGAAGTCGTTAG

Coding sequence (CDS)

ATGGAGTCAATTGATGGATTAGCCTCAACCAATTACAAGGCGGGATCTCTCTCCAGCCTCCAAATGGCCATTTCGTCCGTGTTTTCTCGGTGGGACGGCCTTCAAATGGCCATTGAAAATCGATGGGGAGGTCGCGACTCTCATCAGAAATCTCTGAATCTCGCCTCTGATGTCTTCTCTTGGTTCTCTCAATCCAAACCTCCTTTATACGTGGAAGATCTGGAAAATTTGCTCCATGAAACCCTGTTGCTCTCCTTCAACACCGAGATTGAAGATGGCAGCATCGAACAGGTAGCAGAACACTTGATGATGATATACGAAGAAAATTTGGTGGGAAGTCGTTAG

Protein sequence

MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEHLMMIYEENLVGSR

Homology

[Close]

BLAST of Cla97C05G086310 vs. NCBI nr
Match: XP_008438674.1 (PREDICTED: pre-rRNA-processing protein TSR2 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 213.4 bits (542), Expect = 4.1e-52
Identity = 107/114 (93.86%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFS 60
           ME IDGL STNYKAGS+SSLQMAISSVFSRWDGLQMAIEN+WGGRDSHQKSLNL SDVFS
Sbjct: 1   MEPIDGLTSTNYKAGSVSSLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFS 60

Query: 61  WFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEHLMMIYEENLVGSR 115
           WFS SKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE LMMIYEENLVGSR
Sbjct: 61  WFSYSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEQLMMIYEENLVGSR 114

[Close]

BLAST of Cla97C05G086310 vs. NCBI nr
Match: XP_004134444.1 (PREDICTED: pre-rRNA-processing protein TSR2 isoform X2 [Cucumis sativus] >KGN56979.1 hypothetical protein Csa_3G146640 [Cucumis sativus])

HSP 1 Score: 212.6 bits (540), Expect = 6.9e-52
Identity = 106/114 (92.98%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFS 60
           ME IDGL STNYKAGS+S+LQMAISSVFSRWDGLQMAIEN+WGGRDSHQKSLNL SDVFS
Sbjct: 1   MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFS 60

Query: 61  WFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEHLMMIYEENLVGSR 115
           WFS SKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE LMMIYEENLVGSR
Sbjct: 61  WFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEQLMMIYEENLVGSR 114

[Close]

BLAST of Cla97C05G086310 vs. NCBI nr
Match: XP_008438673.1 (PREDICTED: pre-rRNA-processing protein TSR2 isoform X1 [Cucumis melo])

HSP 1 Score: 208.8 bits (530), Expect = 1.0e-50
Identity = 107/115 (93.04%), Postives = 109/115 (94.78%), Query Frame = 0


Query: 1   MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFS 60
           ME IDGL STNYKAGS+SSLQMAISSVFSRWDGLQMAIEN+WGGRDSHQKSLNL SDVFS
Sbjct: 1   MEPIDGLTSTNYKAGSVSSLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFS 60

Query: 61  WFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIE-QVAEHLMMIYEENLVGSR 115
           WFS SKPPLYVEDLENLLHETLLLSFNTEIEDGSIE QVAE LMMIYEENLVGSR
Sbjct: 61  WFSYSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQQVAEQLMMIYEENLVGSR 115

[Close]

BLAST of Cla97C05G086310 vs. NCBI nr
Match: XP_011650975.1 (PREDICTED: pre-rRNA-processing protein TSR2 isoform X1 [Cucumis sativus])

HSP 1 Score: 208.0 bits (528), Expect = 1.7e-50
Identity = 106/115 (92.17%), Postives = 109/115 (94.78%), Query Frame = 0


Query: 1   MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFS 60
           ME IDGL STNYKAGS+S+LQMAISSVFSRWDGLQMAIEN+WGGRDSHQKSLNL SDVFS
Sbjct: 1   MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFS 60

Query: 61  WFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIE-QVAEHLMMIYEENLVGSR 115
           WFS SKPPLYVEDLENLLHETLLLSFNTEIEDGSIE QVAE LMMIYEENLVGSR
Sbjct: 61  WFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQQVAEQLMMIYEENLVGSR 115

[Close]

BLAST of Cla97C05G086310 vs. NCBI nr
Match: XP_022137757.1 (pre-rRNA-processing protein TSR2 homolog [Momordica charantia])

HSP 1 Score: 204.1 bits (518), Expect = 2.5e-49
Identity = 102/114 (89.47%), Postives = 108/114 (94.74%), Query Frame = 0


Query: 1   MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFS 60
           ME  DGLASTNYKAGS+S LQ AISSVFSRWDGLQMAI+N+WGGRDSHQKSLNLASDVFS
Sbjct: 1   MEPSDGLASTNYKAGSVSGLQTAISSVFSRWDGLQMAIQNQWGGRDSHQKSLNLASDVFS 60

Query: 61  WFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEHLMMIYEENLVGSR 115
           WFS+SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIEQVAE LMMIYEE+L GSR
Sbjct: 61  WFSRSKPPLYVEDLENLLHESLLLSFNTEIEDGSIEQVAEQLMMIYEEHLQGSR 114

[Close]

BLAST of Cla97C05G086310 vs. TrEMBL
Match: tr|A0A1S3AWZ6|A0A1S3AWZ6_CUCME (pre-rRNA-processing protein TSR2 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483709 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.7e-52
Identity = 107/114 (93.86%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFS 60
           ME IDGL STNYKAGS+SSLQMAISSVFSRWDGLQMAIEN+WGGRDSHQKSLNL SDVFS
Sbjct: 1   MEPIDGLTSTNYKAGSVSSLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFS 60

Query: 61  WFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEHLMMIYEENLVGSR 115
           WFS SKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE LMMIYEENLVGSR
Sbjct: 61  WFSYSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEQLMMIYEENLVGSR 114

[Close]

BLAST of Cla97C05G086310 vs. TrEMBL
Match: tr|A0A0A0L7I9|A0A0A0L7I9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G146640 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 4.6e-52
Identity = 106/114 (92.98%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFS 60
           ME IDGL STNYKAGS+S+LQMAISSVFSRWDGLQMAIEN+WGGRDSHQKSLNL SDVFS
Sbjct: 1   MEPIDGLTSTNYKAGSVSNLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFS 60

Query: 61  WFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEHLMMIYEENLVGSR 115
           WFS SKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE LMMIYEENLVGSR
Sbjct: 61  WFSHSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEQLMMIYEENLVGSR 114

[Close]

BLAST of Cla97C05G086310 vs. TrEMBL
Match: tr|A0A1S3AX32|A0A1S3AX32_CUCME (pre-rRNA-processing protein TSR2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483709 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 6.6e-51
Identity = 107/115 (93.04%), Postives = 109/115 (94.78%), Query Frame = 0


Query: 1   MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFS 60
           ME IDGL STNYKAGS+SSLQMAISSVFSRWDGLQMAIEN+WGGRDSHQKSLNL SDVFS
Sbjct: 1   MEPIDGLTSTNYKAGSVSSLQMAISSVFSRWDGLQMAIENQWGGRDSHQKSLNLVSDVFS 60

Query: 61  WFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIE-QVAEHLMMIYEENLVGSR 115
           WFS SKPPLYVEDLENLLHETLLLSFNTEIEDGSIE QVAE LMMIYEENLVGSR
Sbjct: 61  WFSYSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQQVAEQLMMIYEENLVGSR 115

[Close]

BLAST of Cla97C05G086310 vs. TrEMBL
Match: tr|A0A1S3AXM9|A0A1S3AXM9_CUCME (uncharacterized protein LOC103483709 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103483709 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.8e-33
Identity = 85/115 (73.91%), Postives = 87/115 (75.65%), Query Frame = 0


Query: 1   MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFS 60
           ME IDGL STNYKAGS+SSLQMAISSVFSRWDGLQMAIEN+WG                 
Sbjct: 1   MEPIDGLTSTNYKAGSVSSLQMAISSVFSRWDGLQMAIENQWGA---------------- 60

Query: 61  WFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIE-QVAEHLMMIYEENLVGSR 115
                  PLYVEDLENLLHETLLLSFNTEIEDGSIE QVAE LMMIYEENLVGSR
Sbjct: 61  -------PLYVEDLENLLHETLLLSFNTEIEDGSIEQQVAEQLMMIYEENLVGSR 92

[Close]

BLAST of Cla97C05G086310 vs. TrEMBL
Match: tr|D7T6Z4|D7T6Z4_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0020g03580 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.9e-30
Identity = 66/89 (74.16%), Postives = 80/89 (89.89%), Query Frame = 0


Query: 20  LQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLH 79
           LQ  IS   S+W+GLQMA++N+WGGRDSHQKSL LA+D+FSWFS+SK PL VEDLENLLH
Sbjct: 18  LQDGISRHLSQWNGLQMAVQNQWGGRDSHQKSLQLAADIFSWFSESKAPLCVEDLENLLH 77

Query: 80  ETLLLSFNTEIEDGSIEQVAEHLMMIYEE 109
           E++LLSFNTEIEDGSIEQVAE LM+++E+
Sbjct: 78  ESMLLSFNTEIEDGSIEQVAEELMIMHED 106

[Close]

BLAST of Cla97C05G086310 vs. Swiss-Prot
Match: sp|Q8C8T8|TSR2_MOUSE (Pre-rRNA-processing protein TSR2 homolog OS=Mus musculus OX=10090 GN=Tsr2 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.0e-06
Identity = 28/84 (33.33%), Postives = 49/84 (58.33%), Query Frame = 0


Query: 23  AISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETL 82
           A+ +    W  LQ+A+EN +GG  S +K+  L   V  +F  +   L +E++E+ L E +
Sbjct: 15  AVRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEDYFI-ANADLELEEIEDFLGELM 74

Query: 83  LLSFNTEIEDGSIEQVAEHLMMIY 107
              F+T +EDGS+ QV++ L  ++
Sbjct: 75  TTEFDTVVEDGSLPQVSQQLQTMF 97

[Close]

BLAST of Cla97C05G086310 vs. Swiss-Prot
Match: sp|Q3T090|TSR2_BOVIN (Pre-rRNA-processing protein TSR2 homolog OS=Bos taurus OX=9913 GN=TSR2 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-06
Identity = 29/92 (31.52%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 23  AISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETL 82
           A+ +    W  LQ+A+EN +GG  S +K+  L   V  +F ++   L ++++E+ L E +
Sbjct: 15  AVRAALEAWPALQIAVENGFGGVYSQEKAEWLGGAVEEYFFRN-ADLELDEVEDFLGELM 74

Query: 83  LLSFNTEIEDGSIEQVAEHLMMIYEENLVGSR 115
           +  F+T +EDGS+ QV++ L  ++     G R
Sbjct: 75  MNEFDTVVEDGSLPQVSQQLQTMFHHFQKGDR 105

[Close]

BLAST of Cla97C05G086310 vs. Swiss-Prot
Match: sp|Q969E8|TSR2_HUMAN (Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens OX=9606 GN=TSR2 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 5.1e-06
Identity = 27/83 (32.53%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 24  ISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLL 83
           + +    W  LQ+A+EN +GG  S +K+  L   V  +F ++   L ++++E+ L E L 
Sbjct: 16  VCAALEAWPALQIAVENGFGGVHSQEKAKWLGGAVEDYFMRN-ADLELDEVEDFLGELLT 75

Query: 84  LSFNTEIEDGSIEQVAEHLMMIY 107
             F+T +EDGS+ QV++ L  ++
Sbjct: 76  NEFDTVVEDGSLPQVSQQLQTMF 97

[Close]

BLAST of Cla97C05G086310 vs. Swiss-Prot
Match: sp|Q06672|TSR2_YEAST (Pre-rRNA-processing protein TSR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TSR2 PE=1 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 2.5e-05
Identity = 32/92 (34.78%), Postives = 47/92 (51.09%), Query Frame = 0


Query: 21  QMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHE 80
           ++ +S V  +WD L +A+EN WGG DS +K   +   V   F   K    V D   L+ E
Sbjct: 33  ELGVSMVIYKWDALDVAVENSWGGPDSAEKRDWITGIVVDLFKNEK----VVDAA-LIEE 92

Query: 81  TLLLS----FNTEIEDGSIEQVAEHLMMIYEE 109
           TLL +    F T +ED S   +A  ++ IY +
Sbjct: 93  TLLYAMIDEFETNVEDDSALPIAVEVINIYND 119

[Close]

BLAST of Cla97C05G086310 vs. Swiss-Prot
Match: sp|Q3KRG3|TSR2_DANRE (Pre-rRNA-processing protein TSR2 homolog OS=Danio rerio OX=7955 GN=tsr2 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 9.6e-05
Identity = 24/86 (27.91%), Postives = 52/86 (60.47%), Query Frame = 0


Query: 23  AISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETL 82
           A+ +V   W  LQ+A++N +GG  S QK+  +   +  +F+ +   L  +++E+ + E +
Sbjct: 15  AVRAVLETWPVLQIAVDNGFGGAFSQQKAEWMVDALQQYFTDN-GDLQPDEVEDFISELM 74

Query: 83  LLSFNTEIEDGSIEQVAEHLMMIYEE 109
              F+T ++DGS+ QVA+ +  ++++
Sbjct: 75  NNEFDTVVDDGSLPQVAQQVCGMFQQ 99

[Close]

BLAST of Cla97C05G086310 vs. TAIR10
Match: AT3G22510.1 (Pre-rRNA-processing protein TSR2, conserved region)

HSP 1 Score: 112.1 bits (279), Expect = 2.3e-25
Identity = 58/96 (60.42%), Postives = 75/96 (78.12%), Query Frame = 0


Query: 18  SSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENL 77
           S LQ  I  + SRW GLQMA++N+WGG DS +KS  LA ++F   SQS   + VE++ENL
Sbjct: 29  SVLQRDIGELLSRWGGLQMAVKNQWGGHDSLKKSQELAHNLFHLISQSN-VITVEEIENL 88

Query: 78  LHETLLLSFNTEIEDGSIEQVAEHLMMIYEENLVGS 114
           LHE+LLLSFNTEIEDGSIE+VAE LM+++EE+L G+
Sbjct: 89  LHESLLLSFNTEIEDGSIEEVAEQLMILHEEHLRGT 123

[Close]

BLAST of Cla97C05G086310 vs. TAIR10
Match: AT5G27990.1 (Pre-rRNA-processing protein TSR2, conserved region)

HSP 1 Score: 67.8 bits (164), Expect = 5.0e-12
Identity = 38/91 (41.76%), Postives = 55/91 (60.44%), Query Frame = 0


Query: 20  LQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENL-- 79
           L+  I  +  RW  ++ A+EN WGGRDS  K+    + VF +F QSK P  V+D+E L  
Sbjct: 15  LKEGIGLILWRWTAMRAAVENGWGGRDSQAKANETVATVFDFFIQSKDP--VKDIEKLGD 74

Query: 80  LHETLLLSFNTEIEDGSIEQVAEHLMMIYEE 109
           L +  L   NT  EDGS+++VA  L+ +YE+
Sbjct: 75  LLDKGLDELNTTAEDGSVDEVANLLVDLYED 103

The following BLAST results are available for this feature:

BLAST of Cla97C05G086310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008438674.1	4.1e-52	93.86	PREDICTED: pre-rRNA-processing protein TSR2 homolog isoform X2 [Cucumis melo]	[more]
XP_004134444.1	6.9e-52	92.98	PREDICTED: pre-rRNA-processing protein TSR2 isoform X2 [Cucumis sativus] >KGN569...	[more]
XP_008438673.1	1.0e-50	93.04	PREDICTED: pre-rRNA-processing protein TSR2 isoform X1 [Cucumis melo]	[more]
XP_011650975.1	1.7e-50	92.17	PREDICTED: pre-rRNA-processing protein TSR2 isoform X1 [Cucumis sativus]	[more]
XP_022137757.1	2.5e-49	89.47	pre-rRNA-processing protein TSR2 homolog [Momordica charantia]	[more]

BLAST of Cla97C05G086310 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AWZ6\|A0A1S3AWZ6_CUCME	2.7e-52	93.86	pre-rRNA-processing protein TSR2 homolog isoform X2 OS=Cucumis melo OX=3656 GN=L...	[more]
tr\|A0A0A0L7I9\|A0A0A0L7I9_CUCSA	4.6e-52	92.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G146640 PE=4 SV=1	[more]
tr\|A0A1S3AX32\|A0A1S3AX32_CUCME	6.6e-51	93.04	pre-rRNA-processing protein TSR2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483...	[more]
tr\|A0A1S3AXM9\|A0A1S3AXM9_CUCME	2.8e-33	73.91	uncharacterized protein LOC103483709 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|D7T6Z4\|D7T6Z4_VITVI	2.9e-30	74.16	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0020g03580 PE=4 SV=...	[more]

BLAST of Cla97C05G086310 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8C8T8\|TSR2_MOUSE	1.0e-06	33.33	Pre-rRNA-processing protein TSR2 homolog OS=Mus musculus OX=10090 GN=Tsr2 PE=1 S...	[more]
sp\|Q3T090\|TSR2_BOVIN	1.3e-06	31.52	Pre-rRNA-processing protein TSR2 homolog OS=Bos taurus OX=9913 GN=TSR2 PE=2 SV=1	[more]
sp\|Q969E8\|TSR2_HUMAN	5.1e-06	32.53	Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens OX=9606 GN=TSR2 PE=1 SV...	[more]
sp\|Q06672\|TSR2_YEAST	2.5e-05	34.78	Pre-rRNA-processing protein TSR2 OS=Saccharomyces cerevisiae (strain ATCC 204508...	[more]
sp\|Q3KRG3\|TSR2_DANRE	9.6e-05	27.91	Pre-rRNA-processing protein TSR2 homolog OS=Danio rerio OX=7955 GN=tsr2 PE=2 SV=...	[more]

BLAST of Cla97C05G086310 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G22510.1	2.3e-25	60.42	Pre-rRNA-processing protein TSR2, conserved region	[more]
AT5G27990.1	5.0e-12	41.76	Pre-rRNA-processing protein TSR2, conserved region	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019398	Pre-rRNA_process_TSR2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G086310.1	Cla97C05G086310.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019398	Pre-rRNA-processing protein TSR2	PFAM	PF10273	WGG	coord: 22..100 e-value: 3.2E-22 score: 78.9
IPR019398	Pre-rRNA-processing protein TSR2	PANTHER	PTHR21250	UNCHARACTERIZED	coord: 16..112
None	No IPR available	PANTHER	PTHR21250:SF2	SUBFAMILY NOT NAMED	coord: 16..112

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G086310	Cla021622	Watermelon (97103) v1	wmwmbB206
Cla97C05G086310	Csa3G146640	Cucumber (Chinese Long) v2	cuwmbB204
Cla97C05G086310	ClCG05G005150	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G086310	CmaCh06G014050	Cucurbita maxima (Rimu)	cmawmbB856
Cla97C05G086310	CmoCh06G014100	Cucurbita moschata (Rifu)	cmowmbB833
Cla97C05G086310	CsGy3G013260	Cucumber (Gy14) v2	cgybwmbB196
Cla97C05G086310	MELO3C031694.2	Melon (DHL92) v3.6.1	medwmbB423
Cla97C05G086310	Carg17422	Silver-seed gourd	carwmbB0631
Cla97C05G086310	Bhi01G000581	Wax gourd	wgowmbB178

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G086310	Watermelon (97103) v2	wmbwmbB137
Cla97C05G086310	Watermelon (97103) v2	wmbwmbB153
Cla97C05G086310	Silver-seed gourd	carwmbB0112
Cla97C05G086310	Silver-seed gourd	carwmbB0333
Cla97C05G086310	Silver-seed gourd	carwmbB0883
Cla97C05G086310	Cucumber (Gy14) v2	cgybwmbB511
Cla97C05G086310	Cucumber (Gy14) v1	cgywmbB422
Cla97C05G086310	Cucumber (Gy14) v1	cgywmbB452
Cla97C05G086310	Cucurbita maxima (Rimu)	cmawmbB263
Cla97C05G086310	Cucurbita maxima (Rimu)	cmawmbB366
Cla97C05G086310	Cucurbita maxima (Rimu)	cmawmbB367
Cla97C05G086310	Cucurbita maxima (Rimu)	cmawmbB914
Cla97C05G086310	Cucurbita moschata (Rifu)	cmowmbB243
Cla97C05G086310	Cucurbita moschata (Rifu)	cmowmbB352
Cla97C05G086310	Cucurbita moschata (Rifu)	cmowmbB886
Cla97C05G086310	Wild cucumber (PI 183967)	cpiwmbB209
Cla97C05G086310	Wild cucumber (PI 183967)	cpiwmbB566
Cla97C05G086310	Cucumber (Chinese Long) v3	cucwmbB206
Cla97C05G086310	Cucumber (Chinese Long) v3	cucwmbB561
Cla97C05G086310	Bottle gourd (USVL1VR-Ls)	lsiwmbB015
Cla97C05G086310	Bottle gourd (USVL1VR-Ls)	lsiwmbB187
Cla97C05G086310	Bottle gourd (USVL1VR-Ls)	lsiwmbB333
Cla97C05G086310	Melon (DHL92) v3.5.1	mewmbB434
Cla97C05G086310	Watermelon (Charleston Gray)	wcgwmbB021
Cla97C05G086310	Watermelon (Charleston Gray)	wcgwmbB269
Cla97C05G086310	Watermelon (97103) v1	wmwmbB026
Cla97C05G086310	Watermelon (97103) v1	wmwmbB402
Cla97C05G086310	Wax gourd	wgowmbB074
Cla97C05G086310	Wax gourd	wgowmbB578