Cla97C05G085460 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G085460
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Cellulose synthase
Location	Cla97Chr05 : 4095174 .. 4095398 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGGCCTCGTCTTCTTGAATCTCGTCGCCTTCGCAACCGGATTCGGGAGAATCGTAGCGAACCTTGAAGATTGGGAGGAAACATTTGGGCAGCTTTTTCTTTGCTTCTATATATTGTTGATGAGTTTTCCCATCACTGAGGCCATGGTTATAAGAACTGATAAAGCTTGCTTTCCATTTAAAATCACTTTAGGATCCACAGTGGTTCTCTTTGTGGAGTAA

mRNA sequence

ATGGCGGGCCTCGTCTTCTTGAATCTCGTCGCCTTCGCAACCGGATTCGGGAGAATCGTAGCGAACCTTGAAGATTGGGAGGAAACATTTGGGCAGCTTTTTCTTTGCTTCTATATATTGTTGATGAGTTTTCCCATCACTGAGGCCATGGTTATAAGAACTGATAAAGCTTGCTTTCCATTTAAAATCACTTTAGGATCCACAGTGGTTCTCTTTGTGGAGTAA

Coding sequence (CDS)

ATGGCGGGCCTCGTCTTCTTGAATCTCGTCGCCTTCGCAACCGGATTCGGGAGAATCGTAGCGAACCTTGAAGATTGGGAGGAAACATTTGGGCAGCTTTTTCTTTGCTTCTATATATTGTTGATGAGTTTTCCCATCACTGAGGCCATGGTTATAAGAACTGATAAAGCTTGCTTTCCATTTAAAATCACTTTAGGATCCACAGTGGTTCTCTTTGTGGAGTAA

Protein sequence

MAGLVFLNLVAFATGFGRIVANLEDWEETFGQLFLCFYILLMSFPITEAMVIRTDKACFPFKITLGSTVVLFVE

Homology

[Close]

BLAST of Cla97C05G085460 vs. NCBI nr
Match: XP_004134083.1 (PREDICTED: cellulose synthase-like protein E1 [Cucumis sativus] >KGN56893.1 hypothetical protein Csa_3G141890 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 3.6e-25
Identity = 59/73 (80.82%), Postives = 67/73 (91.78%), Query Frame = 0


Query: 1   MAGLVFLNLVAFATGFGRIVANLEDWEETFGQLFLCFYILLMSFPITEAMVIRTDKACFP 60
           MAGLV LNLVA A G GRIVA+LE+WEETFGQLFLCFYILLMSFPI EAMV+RTDKACFP
Sbjct: 661 MAGLVVLNLVALAVGLGRIVASLENWEETFGQLFLCFYILLMSFPIIEAMVLRTDKACFP 720

Query: 61  FKITLGSTVVLFV 74
           FK+TLGS++V+ +
Sbjct: 721 FKVTLGSSLVVLL 733

[Close]

BLAST of Cla97C05G085460 vs. NCBI nr
Match: XP_016899079.1 (PREDICTED: cellulose synthase-like protein G2 isoform X1 [Cucumis melo])

HSP 1 Score: 122.1 bits (305), Expect = 8.0e-25
Identity = 58/73 (79.45%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1   MAGLVFLNLVAFATGFGRIVANLEDWEETFGQLFLCFYILLMSFPITEAMVIRTDKACFP 60
           M GLV LNLVAFA GFGRIV +LEDWEETFGQLFLCFY LLMSFPI EAMV+RTDKAC P
Sbjct: 657 MVGLVVLNLVAFAIGFGRIVGSLEDWEETFGQLFLCFYTLLMSFPIIEAMVLRTDKACIP 716

Query: 61  FKITLGSTVVLFV 74
           FK+TLGS++V+ +
Sbjct: 717 FKVTLGSSLVVLL 729

[Close]

BLAST of Cla97C05G085460 vs. NCBI nr
Match: XP_016899080.1 (PREDICTED: cellulose synthase-like protein G2 isoform X2 [Cucumis melo])

HSP 1 Score: 122.1 bits (305), Expect = 8.0e-25
Identity = 58/73 (79.45%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1   MAGLVFLNLVAFATGFGRIVANLEDWEETFGQLFLCFYILLMSFPITEAMVIRTDKACFP 60
           M GLV LNLVAFA GFGRIV +LEDWEETFGQLFLCFY LLMSFPI EAMV+RTDKAC P
Sbjct: 656 MVGLVVLNLVAFAIGFGRIVGSLEDWEETFGQLFLCFYTLLMSFPIIEAMVLRTDKACIP 715

Query: 61  FKITLGSTVVLFV 74
           FK+TLGS++V+ +
Sbjct: 716 FKVTLGSSLVVLL 728

[Close]

BLAST of Cla97C05G085460 vs. NCBI nr
Match: XP_022144630.1 (cellulose synthase-like protein G1 [Momordica charantia])

HSP 1 Score: 100.9 bits (250), Expect = 1.9e-18
Identity = 49/73 (67.12%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 1   MAGLVFLNLVAFATGFGRIVANLEDWEETFGQLFLCFYILLMSFPITEAMVIRTDKACFP 60
           MAGLVFLNLV+F  G GRIV  L  WEE F Q+FLCFYILL++FPI E MVIR+DK CFP
Sbjct: 655 MAGLVFLNLVSFTIGIGRIV-RLGSWEEMFVQVFLCFYILLVNFPIIEGMVIRSDKGCFP 714

Query: 61  FKITLGSTVVLFV 74
           FK+TLGS + + +
Sbjct: 715 FKVTLGSALAVLI 726

[Close]

BLAST of Cla97C05G085460 vs. NCBI nr
Match: KNA17849.1 (hypothetical protein SOVF_076680 [Spinacia oleracea])

HSP 1 Score: 68.6 bits (166), Expect = 1.0e-08
Identity = 31/70 (44.29%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 4   LVFLNLVAFATGFGRIVANLEDWEETFGQLFLCFYILLMSFPITEAMVIRTDKACFPFKI 63
           +V LNL  F  G  ++V+ + +W+  F Q FL FY+L+MS+P+ EAM +R D  C PF  
Sbjct: 657 VVSLNLCCFIGGVAKLVSGVGNWDALFVQGFLSFYVLIMSYPVMEAMFVRQDNGCIPFST 716

Query: 64  TLGSTVVLFV 74
           TL ST ++ V
Sbjct: 717 TLTSTAIVVV 726

[Close]

BLAST of Cla97C05G085460 vs. TrEMBL
Match: tr|A0A0A0L580|A0A0A0L580_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G141890 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.4e-25
Identity = 59/73 (80.82%), Postives = 67/73 (91.78%), Query Frame = 0


Query: 1   MAGLVFLNLVAFATGFGRIVANLEDWEETFGQLFLCFYILLMSFPITEAMVIRTDKACFP 60
           MAGLV LNLVA A G GRIVA+LE+WEETFGQLFLCFYILLMSFPI EAMV+RTDKACFP
Sbjct: 661 MAGLVVLNLVALAVGLGRIVASLENWEETFGQLFLCFYILLMSFPIIEAMVLRTDKACFP 720

Query: 61  FKITLGSTVVLFV 74
           FK+TLGS++V+ +
Sbjct: 721 FKVTLGSSLVVLL 733

[Close]

BLAST of Cla97C05G085460 vs. TrEMBL
Match: tr|A0A1S4DTQ6|A0A1S4DTQ6_CUCME (cellulose synthase-like protein G2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483628 PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.3e-25
Identity = 58/73 (79.45%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1   MAGLVFLNLVAFATGFGRIVANLEDWEETFGQLFLCFYILLMSFPITEAMVIRTDKACFP 60
           M GLV LNLVAFA GFGRIV +LEDWEETFGQLFLCFY LLMSFPI EAMV+RTDKAC P
Sbjct: 656 MVGLVVLNLVAFAIGFGRIVGSLEDWEETFGQLFLCFYTLLMSFPIIEAMVLRTDKACIP 715

Query: 61  FKITLGSTVVLFV 74
           FK+TLGS++V+ +
Sbjct: 716 FKVTLGSSLVVLL 728

[Close]

BLAST of Cla97C05G085460 vs. TrEMBL
Match: tr|A0A1S4DSW7|A0A1S4DSW7_CUCME (cellulose synthase-like protein G2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483628 PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.3e-25
Identity = 58/73 (79.45%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1   MAGLVFLNLVAFATGFGRIVANLEDWEETFGQLFLCFYILLMSFPITEAMVIRTDKACFP 60
           M GLV LNLVAFA GFGRIV +LEDWEETFGQLFLCFY LLMSFPI EAMV+RTDKAC P
Sbjct: 657 MVGLVVLNLVAFAIGFGRIVGSLEDWEETFGQLFLCFYTLLMSFPIIEAMVLRTDKACIP 716

Query: 61  FKITLGSTVVLFV 74
           FK+TLGS++V+ +
Sbjct: 717 FKVTLGSSLVVLL 729

[Close]

BLAST of Cla97C05G085460 vs. TrEMBL
Match: tr|A0A0K9RFU8|A0A0K9RFU8_SPIOL (Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_076680 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.9e-09
Identity = 31/70 (44.29%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 4   LVFLNLVAFATGFGRIVANLEDWEETFGQLFLCFYILLMSFPITEAMVIRTDKACFPFKI 63
           +V LNL  F  G  ++V+ + +W+  F Q FL FY+L+MS+P+ EAM +R D  C PF  
Sbjct: 657 VVSLNLCCFIGGVAKLVSGVGNWDALFVQGFLSFYVLIMSYPVMEAMFVRQDNGCIPFST 716

Query: 64  TLGSTVVLFV 74
           TL ST ++ V
Sbjct: 717 TLTSTAIVVV 726

[Close]

BLAST of Cla97C05G085460 vs. TrEMBL
Match: tr|A0A061EUJ4|A0A061EUJ4_THECC (Cellulose synthase like G2, putative isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_020815 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.0e-08
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 4   LVFLNLVAFATGFGRIVANLEDWEETFGQLFLCFYILLMSFPITEAMVIRTDKACFPFKI 63
           LV LN+++FA G  RI+    +W E FGQ+FL F+IL++ FPI E M+ R DK   P  +
Sbjct: 658 LVSLNMISFAGGLARIIVKGSNWNEMFGQIFLSFFILMVHFPIVEGMMFRKDKGRIPPSV 717

Query: 64  TLGS 68
           TL S
Sbjct: 718 TLFS 721

[Close]

BLAST of Cla97C05G085460 vs. Swiss-Prot
Match: sp|Q651X6|CSLE6_ORYSJ (Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica OX=39947 GN=CSLE6 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.1e-04
Identity = 24/67 (35.82%), Postives = 35/67 (52.24%), Query Frame = 0


Query: 1   MAGLVFLNLVAFATGFGRIVANLEDWEETFGQLFLCFYILLMSFPITEAMVIRTDKACFP 60
           +A +  LN V    G  +I+A +  W     Q+ LC  I++ + PI EAM +R DK   P
Sbjct: 651 IATVALLNFVCLVAGLSKIMAGV--WNVFLPQVILCGLIVITNIPIYEAMFVRKDKGRIP 710

Query: 61  FKITLGS 68
             +TL S
Sbjct: 711 LPVTLAS 715

The following BLAST results are available for this feature:

BLAST of Cla97C05G085460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134083.1	3.6e-25	80.82	PREDICTED: cellulose synthase-like protein E1 [Cucumis sativus] >KGN56893.1 hypo...	[more]
XP_016899079.1	8.0e-25	79.45	PREDICTED: cellulose synthase-like protein G2 isoform X1 [Cucumis melo]	[more]
XP_016899080.1	8.0e-25	79.45	PREDICTED: cellulose synthase-like protein G2 isoform X2 [Cucumis melo]	[more]
XP_022144630.1	1.9e-18	67.12	cellulose synthase-like protein G1 [Momordica charantia]	[more]
KNA17849.1	1.0e-08	44.29	hypothetical protein SOVF_076680 [Spinacia oleracea]	[more]

BLAST of Cla97C05G085460 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L580\|A0A0A0L580_CUCSA	2.4e-25	80.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G141890 PE=3 SV=1	[more]
tr\|A0A1S4DTQ6\|A0A1S4DTQ6_CUCME	5.3e-25	79.45	cellulose synthase-like protein G2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
tr\|A0A1S4DSW7\|A0A1S4DSW7_CUCME	5.3e-25	79.45	cellulose synthase-like protein G2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
tr\|A0A0K9RFU8\|A0A0K9RFU8_SPIOL	6.9e-09	44.29	Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_076680 PE=3 SV=1	[more]
tr\|A0A061EUJ4\|A0A061EUJ4_THECC	2.0e-08	48.44	Cellulose synthase like G2, putative isoform 1 OS=Theobroma cacao OX=3641 GN=TCM...	[more]

BLAST of Cla97C05G085460 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q651X6\|CSLE6_ORYSJ	3.1e-04	35.82	Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica OX=39947 GN=C...	[more]

BLAST of Cla97C05G085460 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030244	cellulose biosynthetic process
biological_process	GO:0071555	cell wall organization
biological_process	GO:0009833	plant-type primary cell wall biogenesis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005802	trans-Golgi network
molecular_function	GO:0016760	cellulose synthase (UDP-forming) activity
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0016757	transferase activity, transferring glycosyl groups

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G085460.1	Cla97C05G085460.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR13301:SF41	SUBFAMILY NOT NAMED	coord: 2..72
None	No IPR available	PANTHER	PTHR13301	X-BOX TRANSCRIPTION FACTOR-RELATED	coord: 2..72

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G085460	BhiUN425G8	Wax gourd	wgowmbB395

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G085460	Watermelon (97103) v2	wmbwmbB103
Cla97C05G085460	Watermelon (97103) v2	wmbwmbB137
Cla97C05G085460	Watermelon (97103) v2	wmbwmbB141
Cla97C05G085460	Silver-seed gourd	carwmbB0229
Cla97C05G085460	Silver-seed gourd	carwmbB0236
Cla97C05G085460	Silver-seed gourd	carwmbB1008
Cla97C05G085460	Silver-seed gourd	carwmbB0817
Cla97C05G085460	Silver-seed gourd	carwmbB1131
Cla97C05G085460	Cucumber (Gy14) v2	cgybwmbB124
Cla97C05G085460	Cucumber (Gy14) v2	cgybwmbB196
Cla97C05G085460	Cucumber (Gy14) v1	cgywmbB214
Cla97C05G085460	Cucumber (Gy14) v1	cgywmbB452
Cla97C05G085460	Cucumber (Gy14) v1	cgywmbB657
Cla97C05G085460	Cucurbita maxima (Rimu)	cmawmbB004
Cla97C05G085460	Cucurbita maxima (Rimu)	cmawmbB263
Cla97C05G085460	Cucurbita maxima (Rimu)	cmawmbB366
Cla97C05G085460	Cucurbita maxima (Rimu)	cmawmbB648
Cla97C05G085460	Cucurbita maxima (Rimu)	cmawmbB822
Cla97C05G085460	Cucurbita maxima (Rimu)	cmawmbB856
Cla97C05G085460	Cucurbita maxima (Rimu)	cmawmbB914
Cla97C05G085460	Cucurbita moschata (Rifu)	cmowmbB243
Cla97C05G085460	Cucurbita moschata (Rifu)	cmowmbB350
Cla97C05G085460	Cucurbita moschata (Rifu)	cmowmbB622
Cla97C05G085460	Cucurbita moschata (Rifu)	cmowmbB833
Cla97C05G085460	Cucurbita moschata (Rifu)	cmowmbB886
Cla97C05G085460	Wild cucumber (PI 183967)	cpiwmbB133
Cla97C05G085460	Wild cucumber (PI 183967)	cpiwmbB136
Cla97C05G085460	Wild cucumber (PI 183967)	cpiwmbB209
Cla97C05G085460	Cucumber (Chinese Long) v3	cucwmbB134
Cla97C05G085460	Cucumber (Chinese Long) v3	cucwmbB206
Cla97C05G085460	Cucumber (Chinese Long) v2	cuwmbB131
Cla97C05G085460	Cucumber (Chinese Long) v2	cuwmbB134
Cla97C05G085460	Cucumber (Chinese Long) v2	cuwmbB204
Cla97C05G085460	Bottle gourd (USVL1VR-Ls)	lsiwmbB015
Cla97C05G085460	Bottle gourd (USVL1VR-Ls)	lsiwmbB333
Cla97C05G085460	Bottle gourd (USVL1VR-Ls)	lsiwmbB336
Cla97C05G085460	Melon (DHL92) v3.6.1	medwmbB374
Cla97C05G085460	Melon (DHL92) v3.6.1	medwmbB377
Cla97C05G085460	Melon (DHL92) v3.6.1	medwmbB423
Cla97C05G085460	Melon (DHL92) v3.5.1	mewmbB384
Cla97C05G085460	Melon (DHL92) v3.5.1	mewmbB386
Cla97C05G085460	Melon (DHL92) v3.5.1	mewmbB434
Cla97C05G085460	Watermelon (Charleston Gray)	wcgwmbB160
Cla97C05G085460	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G085460	Watermelon (Charleston Gray)	wcgwmbB269
Cla97C05G085460	Watermelon (Charleston Gray)	wcgwmbB304
Cla97C05G085460	Watermelon (97103) v1	wmwmbB161
Cla97C05G085460	Watermelon (97103) v1	wmwmbB206
Cla97C05G085460	Watermelon (97103) v1	wmwmbB402
Cla97C05G085460	Wax gourd	wgowmbB072
Cla97C05G085460	Wax gourd	wgowmbB257