Cla97C05G084170 (gene) Watermelon (97103) v2

Overview
NameCla97C05G084170
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr05 : 3185297 .. 3186062 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAAACGAGGAAGAAAGAGGAAGTGGAAGTGCAAGTTCCTTCTTTTCTGGCTCACATGGCGACTTTCCATTTTGGACCATCTGTCTTCTTCTGACTTCGTATTACCCTCACCTGTGTTCTTCTTATCTAATAAACTTCCAGTTCGCAAAGGTAAAAACGATTGACATAAAACCCTTTTACTTCAATTTCTTTCGCTTTCTTCTATGCAATTCGATTTCATTTCATTTCATTTTTGAATCCGCCTCTCTCTTTGACAAAAACCCCTCCAAAATCCCCTTCAATTGCTCTTTTTCTCTCAAATTATCTCTTCTTTTAGATCTCGTTGTTCTCCCTTGTTCCTCTTTTTGATACAAACATTATTTGTTGGGTTTTGCCCTTTGCTTGGATGGTGGGGTTTTCCTGCTTTTTTCTTGTATTCTTTTCTTGATTCCTTTACATATTTTTATCCATTTCTTTACAGATTCTACTGCTCTTGATTATATTTCTTTAATTTATAATTCCTGCTTCACGCACCCACATGCATGTTTTTGGGTTTGTCTGATCTGGATTGGATCACAAGGATCTTATGTTCTTTTTCTACTTGCAGAGAGAGAAAGAGAGCGAGAGGAAAGAAAGAGAGAGTGGGGTTTAGGCTCCTTTCCTGCAATCTTGGTCTCTAGAGCGGGTCATGGAAGAAGCAAACAGGAGAAGGAGAAGGTGAGTTTTCTTGAATTGAAGGATATTCCCATTGGCCCACTTGAGAAACCTTTCTTCTTTGTTTGA

mRNA sequence

ATGGGTAAACGAGGAAGAAAGAGGAAGTGGAAGTGCAAGTTCCTTCTTTTCTGGCTCACATGGCGACTTTCCATTTTGGACCATCTGTCTTCTTCTGACTTCGTATTACCCTCACCTGTGTTCTTCTTATCTAATAAACTTCCAGTTCGCAAAGAGAGAGAAAGAGAGCGAGAGGAAAGAAAGAGAGAGTGGGGTTTAGGCTCCTTTCCTGCAATCTTGGTCTCTAGAGCGGGTCATGGAAGAAGCAAACAGGAGAAGGAGAAGGTGAGTTTTCTTGAATTGAAGGATATTCCCATTGGCCCACTTGAGAAACCTTTCTTCTTTGTTTGA

Coding sequence (CDS)

ATGGGTAAACGAGGAAGAAAGAGGAAGTGGAAGTGCAAGTTCCTTCTTTTCTGGCTCACATGGCGACTTTCCATTTTGGACCATCTGTCTTCTTCTGACTTCGTATTACCCTCACCTGTGTTCTTCTTATCTAATAAACTTCCAGTTCGCAAAGAGAGAGAAAGAGAGCGAGAGGAAAGAAAGAGAGAGTGGGGTTTAGGCTCCTTTCCTGCAATCTTGGTCTCTAGAGCGGGTCATGGAAGAAGCAAACAGGAGAAGGAGAAGGTGAGTTTTCTTGAATTGAAGGATATTCCCATTGGCCCACTTGAGAAACCTTTCTTCTTTGTTTGA

Protein sequence

MGKRGRKRKWKCKFLLFWLTWRLSILDHLSSSDFVLPSPVFFLSNKLPVRKEREREREERKREWGLGSFPAILVSRAGHGRSKQEKEKVSFLELKDIPIGPLEKPFFFV
Homology
[Close]
BLAST of Cla97C05G084170 vs. NCBI nr
Match: KGN56758.1 (hypothetical protein Csa_3G132600 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 1.4e-22
Identity = 60/84 (71.43%), Postives = 62/84 (73.81%), Query Frame = 0 

Query: 1  MGKRGRKRKWKCKFLLFWLTWRLSILDHLSSSDFVLPSPVFFLSNKLPVRKEXXXXXXXX 60
          MGKRGRKRKWKCKFLLFWLTWRLSI D LSSSDFVLP  VFFLSNKLP+ +E        
Sbjct: 1  MGKRGRKRKWKCKFLLFWLTWRLSIFDILSSSDFVLPFSVFFLSNKLPLLEE---RGIER 60

Query: 61 XXXWGLGSFPAILVSRAGHGRSKQ 85
             WGLGSFPAILVSR      KQ
Sbjct: 61 ERGWGLGSFPAILVSRERVSWKKQ 81

[Close]
BLAST of Cla97C05G084170 vs. TrEMBL
Match: tr|A0A0A0L4R3|A0A0A0L4R3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G132600 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 9.5e-23
Identity = 60/84 (71.43%), Postives = 62/84 (73.81%), Query Frame = 0 

Query: 1  MGKRGRKRKWKCKFLLFWLTWRLSILDHLSSSDFVLPSPVFFLSNKLPVRKEXXXXXXXX 60
          MGKRGRKRKWKCKFLLFWLTWRLSI D LSSSDFVLP  VFFLSNKLP+ +E        
Sbjct: 1  MGKRGRKRKWKCKFLLFWLTWRLSIFDILSSSDFVLPFSVFFLSNKLPLLEE---RGIER 60

Query: 61 XXXWGLGSFPAILVSRAGHGRSKQ 85
             WGLGSFPAILVSR      KQ
Sbjct: 61 ERGWGLGSFPAILVSRERVSWKKQ 81

The following BLAST results are available for this feature:
BLAST of Cla97C05G084170 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN56758.11.4e-2271.43hypothetical protein Csa_3G132600 [Cucumis sativus][more]
BLAST of Cla97C05G084170 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L4R3|A0A0A0L4R3_CUCSA9.5e-2371.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G132600 PE=4 SV=1[more]
BLAST of Cla97C05G084170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C05G084170 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G084170.1Cla97C05G084170.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C05G084170Csa3G132600Cucumber (Chinese Long) v2cuwmbB204
Cla97C05G084170CSPI03G11090Wild cucumber (PI 183967)cpiwmbB209
Cla97C05G084170CsaV3_3G011190Cucumber (Chinese Long) v3cucwmbB206
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C05G084170Watermelon (97103) v2wmbwmbB137
Cla97C05G084170Watermelon (97103) v2wmbwmbB141
Cla97C05G084170Silver-seed gourdcarwmbB0229
Cla97C05G084170Silver-seed gourdcarwmbB0236
Cla97C05G084170Silver-seed gourdcarwmbB1008
Cla97C05G084170Silver-seed gourdcarwmbB0817
Cla97C05G084170Silver-seed gourdcarwmbB1131
Cla97C05G084170Cucumber (Gy14) v2cgybwmbB133
Cla97C05G084170Cucumber (Gy14) v2cgybwmbB196
Cla97C05G084170Cucumber (Gy14) v2cgybwmbB213
Cla97C05G084170Cucumber (Gy14) v1cgywmbB237
Cla97C05G084170Cucumber (Gy14) v1cgywmbB452
Cla97C05G084170Cucurbita maxima (Rimu)cmawmbB263
Cla97C05G084170Cucurbita maxima (Rimu)cmawmbB366
Cla97C05G084170Cucurbita maxima (Rimu)cmawmbB537
Cla97C05G084170Cucurbita maxima (Rimu)cmawmbB648
Cla97C05G084170Cucurbita maxima (Rimu)cmawmbB856
Cla97C05G084170Cucurbita maxima (Rimu)cmawmbB914
Cla97C05G084170Cucurbita moschata (Rifu)cmowmbB243
Cla97C05G084170Cucurbita moschata (Rifu)cmowmbB350
Cla97C05G084170Cucurbita moschata (Rifu)cmowmbB518
Cla97C05G084170Cucurbita moschata (Rifu)cmowmbB622
Cla97C05G084170Cucurbita moschata (Rifu)cmowmbB833
Cla97C05G084170Cucurbita moschata (Rifu)cmowmbB886
Cla97C05G084170Wild cucumber (PI 183967)cpiwmbB142
Cla97C05G084170Wild cucumber (PI 183967)cpiwmbB229
Cla97C05G084170Cucumber (Chinese Long) v3cucwmbB224
Cla97C05G084170Cucumber (Chinese Long) v2cuwmbB225
Cla97C05G084170Bottle gourd (USVL1VR-Ls)lsiwmbB015
Cla97C05G084170Bottle gourd (USVL1VR-Ls)lsiwmbB333
Cla97C05G084170Bottle gourd (USVL1VR-Ls)lsiwmbB335
Cla97C05G084170Melon (DHL92) v3.6.1medwmbB374
Cla97C05G084170Melon (DHL92) v3.6.1medwmbB423
Cla97C05G084170Melon (DHL92) v3.5.1mewmbB384
Cla97C05G084170Melon (DHL92) v3.5.1mewmbB434
Cla97C05G084170Watermelon (Charleston Gray)wcgwmbB229
Cla97C05G084170Watermelon (Charleston Gray)wcgwmbB269
Cla97C05G084170Watermelon (Charleston Gray)wcgwmbB304
Cla97C05G084170Watermelon (97103) v1wmwmbB162
Cla97C05G084170Watermelon (97103) v1wmwmbB206
Cla97C05G084170Watermelon (97103) v1wmwmbB402
Cla97C05G084170Wax gourdwgowmbB072
Cla97C05G084170Wax gourdwgowmbB184
Cla97C05G084170Wax gourdwgowmbB257