Cla97C05G083970 (gene) Watermelon (97103) v2

Overview
NameCla97C05G083970
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptionmultiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like
LocationCla97Chr05 : 3028517 .. 3028750 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCTCTCGTTCCTTCCTTACTGCGACCGGAACCGCCGTATCCGCTTCTTCTCACTCATCTTTCTCCCTTCTGCGCCGCCTCCGTCCCCTCACTGCCATAGTCGCCGCTGATTTCCGGTCTCTCTCTCCGGCCCCGAGCGTGAGGGAGTTCGCTACTTCTTACTCTCTCCACGATCCGAATCCTAACTGGTCTAATCGCCCACCCAAGGAGCAGATTGCCCGATGGCTGTGA

mRNA sequence

ATGTTCTCTCGTTCCTTCCTTACTGCGACCGGAACCGCCGTATCCGCTTCTTCTCACTCATCTTTCTCCCTTCTGCGCCGCCTCCGTCCCCTCACTGCCATAGTCGCCGCTGATTTCCGGTCTCTCTCTCCGGCCCCGAGCGTGAGGGAGTTCGCTACTTCTTACTCTCTCCACGATCCGAATCCTAACTGGTCTAATCGCCCACCCAAGGAGCAGATTGCCCGATGGCTGTGA

Coding sequence (CDS)

ATGTTCTCTCGTTCCTTCCTTACTGCGACCGGAACCGCCGTATCCGCTTCTTCTCACTCATCTTTCTCCCTTCTGCGCCGCCTCCGTCCCCTCACTGCCATAGTCGCCGCTGATTTCCGGTCTCTCTCTCCGGCCCCGAGCGTGAGGGAGTTCGCTACTTCTTACTCTCTCCACGATCCGAATCCTAACTGGTCTAATCGCCCACCCAAGGAGCAGATTGCCCGATGGCTGTGA

Protein sequence

MFSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFRSLSPAPSVREFATSYSLHDPNPNWSNRPPKEQIARWL
Homology
[Close]
BLAST of Cla97C05G083970 vs. NCBI nr
Match: XP_022142853.1 (multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like [Momordica charantia])

HSP 1 Score: 121.7 bits (304), Expect = 1.1e-24
Identity = 66/76 (86.84%), Postives = 67/76 (88.16%), Query Frame = 0 

Query: 1  MFSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFRSLSPAPSVREF---ATSYSL 60
          MFSRSFLTATG AVSASSHSSFSLLRRLRPL AIVAADFR LSPAPS REF   ATS SL
Sbjct: 19 MFSRSFLTATGAAVSASSHSSFSLLRRLRPLAAIVAADFRRLSPAPSAREFSTRATSSSL 78

Query: 61 HDPNPNWSNRPPKEQI 74
          +DPNPNWSNRPPKE I
Sbjct: 79 NDPNPNWSNRPPKETI 94

[Close]
BLAST of Cla97C05G083970 vs. NCBI nr
Match: XP_022941885.1 (multiple organellar RNA editing factor 8, chloroplastic/mitochondrial isoform X1 [Cucurbita moschata])

HSP 1 Score: 110.5 bits (275), Expect = 2.5e-21
Identity = 61/76 (80.26%), Postives = 63/76 (82.89%), Query Frame = 0 

Query: 1  MFSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFRSLSPAPSVREFAT---SYSL 60
          +FSRSFLTATGTA+SASSHSS  LLRRLRPL AIV ADFR LSPA S REFAT   S SL
Sbjct: 19 IFSRSFLTATGTALSASSHSSAYLLRRLRPLAAIVVADFRGLSPAASAREFATSTASSSL 78

Query: 61 HDPNPNWSNRPPKEQI 74
           DPNPNWSNRPPKE I
Sbjct: 79 KDPNPNWSNRPPKETI 94

[Close]
BLAST of Cla97C05G083970 vs. NCBI nr
Match: XP_022941886.1 (multiple organellar RNA editing factor 8, chloroplastic/mitochondrial isoform X2 [Cucurbita moschata])

HSP 1 Score: 110.5 bits (275), Expect = 2.5e-21
Identity = 61/76 (80.26%), Postives = 63/76 (82.89%), Query Frame = 0 

Query: 1  MFSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFRSLSPAPSVREFAT---SYSL 60
          +FSRSFLTATGTA+SASSHSS  LLRRLRPL AIV ADFR LSPA S REFAT   S SL
Sbjct: 19 IFSRSFLTATGTALSASSHSSAYLLRRLRPLAAIVVADFRGLSPAASAREFATSTASSSL 78

Query: 61 HDPNPNWSNRPPKEQI 74
           DPNPNWSNRPPKE I
Sbjct: 79 KDPNPNWSNRPPKETI 94

[Close]
BLAST of Cla97C05G083970 vs. NCBI nr
Match: XP_008451724.1 (PREDICTED: multiple organellar RNA editing factor 8, chloroplastic/mitochondrial [Cucumis melo])

HSP 1 Score: 109.0 bits (271), Expect = 7.3e-21
Identity = 60/75 (80.00%), Postives = 64/75 (85.33%), Query Frame = 0 

Query: 2  FSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFRSLSPAPSVREF---ATSYSLH 61
          FSRSFLTATG A+SASSHSS SLLRRLRPL AI+AADFR  S APSVR+F   ATS SL+
Sbjct: 20 FSRSFLTATGAALSASSHSSSSLLRRLRPLAAILAADFRCHSAAPSVRDFSTRATSSSLN 79

Query: 62 DPNPNWSNRPPKEQI 74
          DPNPNWSNRPPKE I
Sbjct: 80 DPNPNWSNRPPKETI 94

[Close]
BLAST of Cla97C05G083970 vs. NCBI nr
Match: XP_022922871.1 (multiple organellar RNA editing factor 8, chloroplastic/mitochondrial isoform X2 [Cucurbita moschata])

HSP 1 Score: 109.0 bits (271), Expect = 7.3e-21
Identity = 61/76 (80.26%), Postives = 64/76 (84.21%), Query Frame = 0 

Query: 1  MFSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFRSLSPAPSVREF---ATSYSL 60
          MFSRSFLTA   A+SASS SS SLLR LRPLTAIV ADFRS+SPAPSVREF   ATS SL
Sbjct: 19 MFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFRSVSPAPSVREFATRATSSSL 78

Query: 61 HDPNPNWSNRPPKEQI 74
          +DPNPNWSNRPPKE I
Sbjct: 79 NDPNPNWSNRPPKETI 94

[Close]
BLAST of Cla97C05G083970 vs. TrEMBL
Match: tr|A0A1S3BTA4|A0A1S3BTA4_CUCME (multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103492931 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.8e-21
Identity = 60/75 (80.00%), Postives = 64/75 (85.33%), Query Frame = 0 

Query: 2  FSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFRSLSPAPSVREF---ATSYSLH 61
          FSRSFLTATG A+SASSHSS SLLRRLRPL AI+AADFR  S APSVR+F   ATS SL+
Sbjct: 20 FSRSFLTATGAALSASSHSSSSLLRRLRPLAAILAADFRCHSAAPSVRDFSTRATSSSLN 79

Query: 62 DPNPNWSNRPPKEQI 74
          DPNPNWSNRPPKE I
Sbjct: 80 DPNPNWSNRPPKETI 94

[Close]
BLAST of Cla97C05G083970 vs. TrEMBL
Match: tr|A0A1S3ASM8|A0A1S3ASM8_CUCME (multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103482565 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.1e-20
Identity = 56/76 (73.68%), Postives = 62/76 (81.58%), Query Frame = 0 

Query: 1  MFSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFRSLSPAPSVREFAT---SYSL 60
          MFSRSFL  TG  +SASSHSSFSLLRR RPL AI AADFR LSPAP+V++F+T   S SL
Sbjct: 21 MFSRSFLATTGVTISASSHSSFSLLRRFRPLAAIPAADFRRLSPAPTVKDFSTRVASSSL 80

Query: 61 HDPNPNWSNRPPKEQI 74
          +DPNPNWSNR PKE I
Sbjct: 81 NDPNPNWSNRTPKETI 96

[Close]
BLAST of Cla97C05G083970 vs. TrEMBL
Match: tr|A0A0A0KPF6|A0A0A0KPF6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G167045 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-19
Identity = 56/76 (73.68%), Postives = 61/76 (80.26%), Query Frame = 0 

Query: 1  MFSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFRSLSPAPSVREFAT---SYSL 60
          MF+RSFL   G  +SASSHSSFSLLRR RPL AI AADFR LSPA +VR+FAT   S SL
Sbjct: 21 MFTRSFLATGGATISASSHSSFSLLRRFRPLVAIPAADFRRLSPALTVRDFATRVASSSL 80

Query: 61 HDPNPNWSNRPPKEQI 74
          +DPNPNWSNRPPKE I
Sbjct: 81 NDPNPNWSNRPPKETI 96

[Close]
BLAST of Cla97C05G083970 vs. TrEMBL
Match: tr|A0A0A0KXM3|A0A0A0KXM3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G083630 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-19
Identity = 57/75 (76.00%), Postives = 63/75 (84.00%), Query Frame = 0 

Query: 2  FSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFRSLSPAPSVREF---ATSYSLH 61
          FSRSFLTATG A+SASS SS SL+RRLRPL AI+AADFR  S APS+R+F   ATS SL+
Sbjct: 20 FSRSFLTATGAAISASSPSSSSLIRRLRPLAAILAADFRCHSAAPSLRDFSTRATSSSLN 79

Query: 62 DPNPNWSNRPPKEQI 74
          DPNPNWSNRPPKE I
Sbjct: 80 DPNPNWSNRPPKETI 94

[Close]
BLAST of Cla97C05G083970 vs. TrEMBL
Match: tr|A0A1S3BSY7|A0A1S3BSY7_CUCME (multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103492930 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.7e-16
Identity = 53/76 (69.74%), Postives = 59/76 (77.63%), Query Frame = 0 

Query: 1  MFSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFRSLSPAPSVREF---ATSYSL 60
          +FSRSFLTATG  +S SSHSS SLLRRLRPL AI+AADF   S APSVR F   +TS S+
Sbjct: 16 LFSRSFLTATGATISVSSHSSSSLLRRLRPLAAILAADFLCHSAAPSVRVFSTRSTSSSI 75

Query: 61 HDPNPNWSNRPPKEQI 74
           DPNPN S+RPPKE I
Sbjct: 76 KDPNPNSSSRPPKETI 91

[Close]
BLAST of Cla97C05G083970 vs. Swiss-Prot
Match: sp|Q9LKA5|MORF8_ARATH (Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MORF8 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.3e-08
Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 0 

Query: 1  MFSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFR-SLSPAPSVREFATSYSLHD 60
          +F+RSF ++   A S +S    SLL R RPL A  ++ FR  L     +   ATS SL+D
Sbjct: 21 LFTRSFASSAPLAKSPAS----SLLSRSRPLVAAFSSVFRGGLVSVKGLSTQATSSSLND 80

Query: 61 PNPNWSNRPPKEQI 74
          PNPNWSNRPPKE I
Sbjct: 81 PNPNWSNRPPKETI 90

[Close]
BLAST of Cla97C05G083970 vs. TAIR10
Match: AT3G15000.1 (cobalt ion binding)

HSP 1 Score: 57.8 bits (138), Expect = 3.5e-09
Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 0 

Query: 1  MFSRSFLTATGTAVSASSHSSFSLLRRLRPLTAIVAADFR-SLSPAPSVREFATSYSLHD 60
          +F+RSF ++   A S +S    SLL R RPL A  ++ FR  L     +   ATS SL+D
Sbjct: 21 LFTRSFASSAPLAKSPAS----SLLSRSRPLVAAFSSVFRGGLVSVKGLSTQATSSSLND 80

Query: 61 PNPNWSNRPPKEQI 74
          PNPNWSNRPPKE I
Sbjct: 81 PNPNWSNRPPKETI 90

[Close]
BLAST of Cla97C05G083970 vs. TAIR10
Match: AT3G06790.1 (plastid developmental protein DAG, putative)

HSP 1 Score: 39.7 bits (91), Expect = 9.8e-04
Identity = 27/69 (39.13%), Postives = 39/69 (56.52%), Query Frame = 0 

Query: 9  ATGTAVSASSHSSFSLLRRLRPLTAIVAADFRSLSP---APSVREFATSYS-LHDPNPNW 68
          ++ T+ S+S  +  S  R   PL   V++   SL P   +   +   + YS L+DP+PNW
Sbjct: 19 SSSTSYSSSFPTLSSRSRFAMPLIEKVSSSRTSLGPCYISTRPKTSGSGYSPLNDPSPNW 78

Query: 69 SNRPPKEQI 74
          SNRPPKE I
Sbjct: 79 SNRPPKETI 87

The following BLAST results are available for this feature:
BLAST of Cla97C05G083970 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022142853.11.1e-2486.84multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like [Momo... [more]
XP_022941885.12.5e-2180.26multiple organellar RNA editing factor 8, chloroplastic/mitochondrial isoform X1... [more]
XP_022941886.12.5e-2180.26multiple organellar RNA editing factor 8, chloroplastic/mitochondrial isoform X2... [more]
XP_008451724.17.3e-2180.00PREDICTED: multiple organellar RNA editing factor 8, chloroplastic/mitochondrial... [more]
XP_022922871.17.3e-2180.26multiple organellar RNA editing factor 8, chloroplastic/mitochondrial isoform X2... [more]
BLAST of Cla97C05G083970 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BTA4|A0A1S3BTA4_CUCME4.8e-2180.00multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Cucumis... [more]
tr|A0A1S3ASM8|A0A1S3ASM8_CUCME3.1e-2073.68multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like OS=Cu... [more]
tr|A0A0A0KPF6|A0A0A0KPF6_CUCSA1.5e-1973.68Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G167045 PE=4 SV=1[more]
tr|A0A0A0KXM3|A0A0A0KXM3_CUCSA1.5e-1976.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G083630 PE=4 SV=1[more]
tr|A0A1S3BSY7|A0A1S3BSY7_CUCME2.7e-1669.74multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like OS=Cu... [more]
BLAST of Cla97C05G083970 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LKA5|MORF8_ARATH6.3e-0850.00Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Arabido... [more]
BLAST of Cla97C05G083970 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G15000.13.5e-0950.00cobalt ion binding[more]
AT3G06790.19.8e-0439.13plastid developmental protein DAG, putative[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0016554cytidine to uridine editing
Vocabulary: INTERPRO
TermDefinition
IPR039206MORF/ORRM1/DAG-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032259 methylation
biological_process GO:0016554 cytidine to uridine editing
cellular_component GO:0005575 cellular_component
molecular_function GO:0016874 ligase activity
molecular_function GO:0008168 methyltransferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G083970.1Cla97C05G083970.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31346:SF4MULTIPLE ORGANELLAR RNA EDITING FACTOR 8, CHLOROPLASTIC/MITOCHONDRIALcoord: 2..73
IPR039206MORF/ORRM1/DAG-likePANTHERPTHR31346FAMILY NOT NAMEDcoord: 2..73

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C05G083970Cla021420Watermelon (97103) v1wmwmbB206
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C05G083970Watermelon (97103) v2wmbwmbB137
Cla97C05G083970Watermelon (97103) v2wmbwmbB141
Cla97C05G083970Silver-seed gourdcarwmbB0179
Cla97C05G083970Silver-seed gourdcarwmbB0229
Cla97C05G083970Silver-seed gourdcarwmbB1008
Cla97C05G083970Silver-seed gourdcarwmbB0817
Cla97C05G083970Silver-seed gourdcarwmbB1131
Cla97C05G083970Cucumber (Gy14) v2cgybwmbB133
Cla97C05G083970Cucumber (Gy14) v2cgybwmbB196
Cla97C05G083970Cucumber (Gy14) v2cgybwmbB213
Cla97C05G083970Cucumber (Gy14) v1cgywmbB452
Cla97C05G083970Cucurbita maxima (Rimu)cmawmbB263
Cla97C05G083970Cucurbita maxima (Rimu)cmawmbB366
Cla97C05G083970Cucurbita maxima (Rimu)cmawmbB537
Cla97C05G083970Cucurbita maxima (Rimu)cmawmbB648
Cla97C05G083970Cucurbita maxima (Rimu)cmawmbB856
Cla97C05G083970Cucurbita maxima (Rimu)cmawmbB863
Cla97C05G083970Cucurbita moschata (Rifu)cmowmbB243
Cla97C05G083970Cucurbita moschata (Rifu)cmowmbB350
Cla97C05G083970Cucurbita moschata (Rifu)cmowmbB518
Cla97C05G083970Cucurbita moschata (Rifu)cmowmbB622
Cla97C05G083970Cucurbita moschata (Rifu)cmowmbB833
Cla97C05G083970Cucurbita moschata (Rifu)cmowmbB886
Cla97C05G083970Wild cucumber (PI 183967)cpiwmbB142
Cla97C05G083970Wild cucumber (PI 183967)cpiwmbB209
Cla97C05G083970Wild cucumber (PI 183967)cpiwmbB229
Cla97C05G083970Cucumber (Chinese Long) v3cucwmbB206
Cla97C05G083970Cucumber (Chinese Long) v3cucwmbB224
Cla97C05G083970Cucumber (Chinese Long) v2cuwmbB204
Cla97C05G083970Bottle gourd (USVL1VR-Ls)lsiwmbB015
Cla97C05G083970Bottle gourd (USVL1VR-Ls)lsiwmbB333
Cla97C05G083970Melon (DHL92) v3.6.1medwmbB423
Cla97C05G083970Melon (DHL92) v3.5.1mewmbB384
Cla97C05G083970Melon (DHL92) v3.5.1mewmbB434
Cla97C05G083970Watermelon (Charleston Gray)wcgwmbB229
Cla97C05G083970Watermelon (Charleston Gray)wcgwmbB269
Cla97C05G083970Watermelon (Charleston Gray)wcgwmbB304
Cla97C05G083970Watermelon (97103) v1wmwmbB162
Cla97C05G083970Wax gourdwgowmbB072
Cla97C05G083970Wax gourdwgowmbB180
Cla97C05G083970Wax gourdwgowmbB257