Cla97C05G082820 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G082820
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	50S ribosomal protein L2, chloroplastic
Location	Cla97Chr05 : 2140310 .. 2140618 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCGTAACCATATGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTTTGA

mRNA sequence

ATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTTTGA

Coding sequence (CDS)

ATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTTTGA

Protein sequence

MDSIVVVKVVMPEESLPQGIEGEVISVYTVKSIFDGMKKTYMVESGAIIGDTIVSGTEVPIKMGNALPLSAV

Homology

[Close]

BLAST of Cla97C05G082820 vs. NCBI nr
Match: PIN21046.1 (hypothetical protein CDL12_06263 [Handroanthus impetiginosus])

HSP 1 Score: 92.0 bits (227), Expect = 8.6e-16
Identity = 52/71 (73.24%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 5  VVVKVVMPEESLPQGIEGEVISVYTVKSIFDGMKK--TYMVE-SGAIIGDTIVSGTEVPI 64
          +VVKVV+PEESLPQGIE E +++YTVK IFDGMKK   Y++   GAIIGDTIVSG EVPI
Sbjct: 1  MVVKVVIPEESLPQGIEKEAMNIYTVKLIFDGMKKHIRYILHPRGAIIGDTIVSGIEVPI 60

Query: 65 KMGNALPLSAV 73
          K+GNAL LSAV
Sbjct: 61 KIGNALSLSAV 71

[Close]

BLAST of Cla97C05G082820 vs. NCBI nr
Match: OAY85567.1 (50S ribosomal protein L2, chloroplastic [Ananas comosus])

HSP 1 Score: 85.5 bits (210), Expect = 8.1e-14
Identity = 49/80 (61.25%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 1  MDSIVVVKVVMPEESLPQGIEGEVISV---------YTVKSIFDGMKKTYMVESGAIIGD 60
          MD IVVVKVVMPEESLPQGIEG ++++           +    DG K+  +   GAIIGD
Sbjct: 1  MDGIVVVKVVMPEESLPQGIEGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGD 60

Query: 61 TIVSGTEVPIKMGNALPLSA 72
          TIVSGTEVPI MGNALPLSA
Sbjct: 61 TIVSGTEVPISMGNALPLSA 80

[Close]

BLAST of Cla97C05G082820 vs. NCBI nr
Match: OMP12368.1 (Ribosomal protein L2 [Corchorus olitorius])

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-09
Identity = 49/102 (48.04%), Postives = 57/102 (55.88%), Query Frame = 0


Query: 1   MDSIVVVKVVMPEESLP---------------------QGIEGEVISV---------YTV 60
           MDSIVVVKVVMPEESLP                     + I G ++++           +
Sbjct: 1   MDSIVVVKVVMPEESLPARHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICL 60

Query: 61  KSIFDGMKKTYMVESGAIIGDTIVSGTEVPIKMGNALPLSAV 73
               DG K+  +   GAIIGDTIVSGTEVPIKMGNALPLSAV
Sbjct: 61  IHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 102

[Close]

BLAST of Cla97C05G082820 vs. NCBI nr
Match: YP_003587709.1 (ribosomal protein L2 [Anomochloa marantoidea] >ACT15447.1 ribosomal protein L2 (chloroplast) [Anomochloa marantoidea])

HSP 1 Score: 67.0 bits (162), Expect = 3.0e-08
Identity = 46/96 (47.92%), Postives = 50/96 (52.08%), Query Frame = 0


Query: 5   VVVKVVMPEESLPQGIEGEVISVYTVKSIF------------------------------ 64
           VVVKVVMPEESLPQGIEGE       K  F                              
Sbjct: 36  VVVKVVMPEESLPQGIEGEAHKRLYRKIDFRRNQKDISGRIVTIEYDPNRNAYICLIHYG 95

Query: 65  DGMKKTYMVESGAIIGDTIVSGTEVPIKMGNALPLS 71
           DG K+  +   GAIIGDTIVSGT+VPI MGNALPL+
Sbjct: 96  DGEKRYILHPRGAIIGDTIVSGTKVPISMGNALPLT 131

[Close]

BLAST of Cla97C05G082820 vs. NCBI nr
Match: XP_007162786.1 (hypothetical protein PHAVU_001G180400g [Phaseolus vulgaris] >ESW34780.1 hypothetical protein PHAVU_001G180400g [Phaseolus vulgaris])

HSP 1 Score: 60.1 bits (144), Expect = 3.6e-06
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 35  DGMKKTYMVESGAIIGDTIVSGTEVPIKMGNALPLSAV 73
           DG KK  +   GAIIGDTIVSGTEVPIKMGNALPLSAV
Sbjct: 96  DGEKKYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 133

[Close]

BLAST of Cla97C05G082820 vs. TrEMBL
Match: tr|A0A2G9HU46|A0A2G9HU46_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_06263 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.7e-16
Identity = 52/71 (73.24%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 5  VVVKVVMPEESLPQGIEGEVISVYTVKSIFDGMKK--TYMVE-SGAIIGDTIVSGTEVPI 64
          +VVKVV+PEESLPQGIE E +++YTVK IFDGMKK   Y++   GAIIGDTIVSG EVPI
Sbjct: 1  MVVKVVIPEESLPQGIEKEAMNIYTVKLIFDGMKKHIRYILHPRGAIIGDTIVSGIEVPI 60

Query: 65 KMGNALPLSAV 73
          K+GNAL LSAV
Sbjct: 61 KIGNALSLSAV 71

[Close]

BLAST of Cla97C05G082820 vs. TrEMBL
Match: tr|A0A199W7Y2|A0A199W7Y2_ANACO (50S ribosomal protein L2, chloroplastic OS=Ananas comosus OX=4615 GN=ACMD2_07644 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.3e-14
Identity = 49/80 (61.25%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 1  MDSIVVVKVVMPEESLPQGIEGEVISV---------YTVKSIFDGMKKTYMVESGAIIGD 60
          MD IVVVKVVMPEESLPQGIEG ++++           +    DG K+  +   GAIIGD
Sbjct: 1  MDGIVVVKVVMPEESLPQGIEGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGD 60

Query: 61 TIVSGTEVPIKMGNALPLSA 72
          TIVSGTEVPI MGNALPLSA
Sbjct: 61 TIVSGTEVPISMGNALPLSA 80

[Close]

BLAST of Cla97C05G082820 vs. TrEMBL
Match: tr|A0A1R3KZC3|A0A1R3KZC3_9ROSI (Ribosomal protein L2 OS=Corchorus olitorius OX=93759 GN=COLO4_03279 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.0e-09
Identity = 49/102 (48.04%), Postives = 57/102 (55.88%), Query Frame = 0


Query: 1   MDSIVVVKVVMPEESLP---------------------QGIEGEVISV---------YTV 60
           MDSIVVVKVVMPEESLP                     + I G ++++           +
Sbjct: 1   MDSIVVVKVVMPEESLPARHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICL 60

Query: 61  KSIFDGMKKTYMVESGAIIGDTIVSGTEVPIKMGNALPLSAV 73
               DG K+  +   GAIIGDTIVSGTEVPIKMGNALPLSAV
Sbjct: 61  IHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 102

[Close]

BLAST of Cla97C05G082820 vs. TrEMBL
Match: tr|D5HQK1|D5HQK1_ANOMA (50S ribosomal protein L2, chloroplastic OS=Anomochloa marantoidea OX=38684 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.0e-08
Identity = 46/96 (47.92%), Postives = 50/96 (52.08%), Query Frame = 0


Query: 5   VVVKVVMPEESLPQGIEGEVISVYTVKSIF------------------------------ 64
           VVVKVVMPEESLPQGIEGE       K  F                              
Sbjct: 36  VVVKVVMPEESLPQGIEGEAHKRLYRKIDFRRNQKDISGRIVTIEYDPNRNAYICLIHYG 95

Query: 65  DGMKKTYMVESGAIIGDTIVSGTEVPIKMGNALPLS 71
           DG K+  +   GAIIGDTIVSGT+VPI MGNALPL+
Sbjct: 96  DGEKRYILHPRGAIIGDTIVSGTKVPISMGNALPLT 131

[Close]

BLAST of Cla97C05G082820 vs. TrEMBL
Match: tr|M0S2W2|M0S2W2_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.7e-07
Identity = 35/45 (77.78%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 1  MDSIVVVKVVMPEESLPQGIEGEVISVYTVKSIFDGMKKTYMVES 46
          MDSIVVV    PE+SLP GIEGEVISVY VKSIF GMKKTYM +S
Sbjct: 1  MDSIVVV----PEKSLPHGIEGEVISVYIVKSIFKGMKKTYMNKS 41

[Close]

BLAST of Cla97C05G082820 vs. Swiss-Prot
Match: sp|Q2PMM3|RK2B_SOYBN (50S ribosomal protein L2-B, chloroplastic OS=Glycine max OX=3847 GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.0e-07
Identity = 29/36 (80.56%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 35  DGMKKTYMVESGAIIGDTIVSGTEVPIKMGNALPLS 71
           DG KK  +   GAIIGDTIVSGTEVPIKMGNALPLS
Sbjct: 96  DGEKKYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 131

[Close]

BLAST of Cla97C05G082820 vs. Swiss-Prot
Match: sp|A0A398|RK2B_COFAR (50S ribosomal protein L2-B, chloroplastic OS=Coffea arabica OX=13443 GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-07
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 35  DGMKKTYMVESGAIIGDTIVSGTEVPIKMGNALPLSA 72
           DG K+  +   GA+IGDTIVSGTEVPIKMGNALPLSA
Sbjct: 96  DGEKRYILHPRGALIGDTIVSGTEVPIKMGNALPLSA 132

[Close]

BLAST of Cla97C05G082820 vs. Swiss-Prot
Match: sp|P18663|RK2A_SOYBN (50S ribosomal protein L2-A, chloroplastic OS=Glycine max OX=3847 GN=rpl2-A PE=3 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 2.2e-07
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 35  DGMKKTYMVESGAIIGDTIVSGTEVPIKMGNALPLS 71
           DG KK  +   GAIIGDTIVSGTEVPIKMGNALPL+
Sbjct: 96  DGEKKYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131

[Close]

BLAST of Cla97C05G082820 vs. Swiss-Prot
Match: sp|Q8LVH2|RK2_PHAAN (50S ribosomal protein L2, chloroplastic OS=Phaseolus angularis OX=3914 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.2e-07
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 35  DGMKKTYMVESGAIIGDTIVSGTEVPIKMGNALPLS 71
           DG KK  +   GAIIGDTIVSGTEVPIKMGNALPL+
Sbjct: 97  DGEKKYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 132

[Close]

BLAST of Cla97C05G082820 vs. Swiss-Prot
Match: sp|A4GGF8|RK2_PHAVU (50S ribosomal protein L2, chloroplastic OS=Phaseolus vulgaris OX=3885 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.2e-07
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 35  DGMKKTYMVESGAIIGDTIVSGTEVPIKMGNALPLS 71
           DG KK  +   GAIIGDTIVSGTEVPIKMGNALPL+
Sbjct: 96  DGEKKYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131

[Close]

BLAST of Cla97C05G082820 vs. TAIR10
Match: ATCG00830.1 (ribosomal protein L2)

HSP 1 Score: 54.7 bits (130), Expect = 2.8e-08
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 35  DGMKKTYMVESGAIIGDTIVSGTEVPIKMGNALPLS 71
           DG K+  +   GAIIGDTIVSGTEVPIKMGNALPL+
Sbjct: 96  DGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131

[Close]

BLAST of Cla97C05G082820 vs. TAIR10
Match: ATCG01310.1 (ribosomal protein L2)

HSP 1 Score: 54.7 bits (130), Expect = 2.8e-08
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 35  DGMKKTYMVESGAIIGDTIVSGTEVPIKMGNALPLS 71
           DG K+  +   GAIIGDTIVSGTEVPIKMGNALPL+
Sbjct: 96  DGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131

The following BLAST results are available for this feature:

BLAST of Cla97C05G082820 vs. NCBI nr


Match Name	E-value	Identity	Description
PIN21046.1	8.6e-16	73.24	hypothetical protein CDL12_06263 [Handroanthus impetiginosus]	[more]
OAY85567.1	8.1e-14	61.25	50S ribosomal protein L2, chloroplastic [Ananas comosus]	[more]
OMP12368.1	1.6e-09	48.04	Ribosomal protein L2 [Corchorus olitorius]	[more]
YP_003587709.1	3.0e-08	47.92	ribosomal protein L2 [Anomochloa marantoidea] >ACT15447.1 ribosomal protein L2 (...	[more]
XP_007162786.1	3.6e-06	81.58	hypothetical protein PHAVU_001G180400g [Phaseolus vulgaris] >ESW34780.1 hypothet...	[more]

BLAST of Cla97C05G082820 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2G9HU46\|A0A2G9HU46_9LAMI	5.7e-16	73.24	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_06263 P...	[more]
tr\|A0A199W7Y2\|A0A199W7Y2_ANACO	5.3e-14	61.25	50S ribosomal protein L2, chloroplastic OS=Ananas comosus OX=4615 GN=ACMD2_07644...	[more]
tr\|A0A1R3KZC3\|A0A1R3KZC3_9ROSI	1.0e-09	48.04	Ribosomal protein L2 OS=Corchorus olitorius OX=93759 GN=COLO4_03279 PE=4 SV=1	[more]
tr\|D5HQK1\|D5HQK1_ANOMA	2.0e-08	47.92	50S ribosomal protein L2, chloroplastic OS=Anomochloa marantoidea OX=38684 GN=rp...	[more]
tr\|M0S2W2\|M0S2W2_MUSAM	3.7e-07	77.78	Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1	[more]

BLAST of Cla97C05G082820 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q2PMM3\|RK2B_SOYBN	1.0e-07	80.56	50S ribosomal protein L2-B, chloroplastic OS=Glycine max OX=3847 GN=rpl2-B PE=3 ...	[more]
sp\|A0A398\|RK2B_COFAR	1.3e-07	75.68	50S ribosomal protein L2-B, chloroplastic OS=Coffea arabica OX=13443 GN=rpl2-B P...	[more]
sp\|P18663\|RK2A_SOYBN	2.2e-07	77.78	50S ribosomal protein L2-A, chloroplastic OS=Glycine max OX=3847 GN=rpl2-A PE=3 ...	[more]
sp\|Q8LVH2\|RK2_PHAAN	2.2e-07	77.78	50S ribosomal protein L2, chloroplastic OS=Phaseolus angularis OX=3914 GN=rpl2 P...	[more]
sp\|A4GGF8\|RK2_PHAVU	2.2e-07	77.78	50S ribosomal protein L2, chloroplastic OS=Phaseolus vulgaris OX=3885 GN=rpl2-A ...	[more]

BLAST of Cla97C05G082820 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00830.1	2.8e-08	75.00	ribosomal protein L2	[more]
ATCG01310.1	2.8e-08	75.00	ribosomal protein L2	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G082820.1	Cla97C05G082820.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G082820	Watermelon (97103) v2	wmbwmbB131
Cla97C05G082820	Silver-seed gourd	carwmbB0229
Cla97C05G082820	Silver-seed gourd	carwmbB1008
Cla97C05G082820	Silver-seed gourd	carwmbB0647
Cla97C05G082820	Cucumber (Gy14) v2	cgybwmbB196
Cla97C05G082820	Cucumber (Gy14) v2	cgybwmbB437
Cla97C05G082820	Cucumber (Gy14) v1	cgywmbB452
Cla97C05G082820	Cucumber (Gy14) v1	cgywmbB622
Cla97C05G082820	Cucurbita maxima (Rimu)	cmawmbB263
Cla97C05G082820	Cucurbita maxima (Rimu)	cmawmbB366
Cla97C05G082820	Cucurbita maxima (Rimu)	cmawmbB856
Cla97C05G082820	Cucurbita moschata (Rifu)	cmowmbB243
Cla97C05G082820	Cucurbita moschata (Rifu)	cmowmbB350
Cla97C05G082820	Cucurbita moschata (Rifu)	cmowmbB833
Cla97C05G082820	Wild cucumber (PI 183967)	cpiwmbB209
Cla97C05G082820	Wild cucumber (PI 183967)	cpiwmbB485
Cla97C05G082820	Cucumber (Chinese Long) v3	cucwmbB206
Cla97C05G082820	Cucumber (Chinese Long) v3	cucwmbB478
Cla97C05G082820	Cucumber (Chinese Long) v2	cuwmbB204
Cla97C05G082820	Cucumber (Chinese Long) v2	cuwmbB460
Cla97C05G082820	Bottle gourd (USVL1VR-Ls)	lsiwmbB020
Cla97C05G082820	Bottle gourd (USVL1VR-Ls)	lsiwmbB333
Cla97C05G082820	Melon (DHL92) v3.6.1	medwmbB116
Cla97C05G082820	Melon (DHL92) v3.6.1	medwmbB423
Cla97C05G082820	Melon (DHL92) v3.5.1	mewmbB125
Cla97C05G082820	Melon (DHL92) v3.5.1	mewmbB434
Cla97C05G082820	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G082820	Watermelon (Charleston Gray)	wcgwmbB264
Cla97C05G082820	Watermelon (97103) v1	wmwmbB206
Cla97C05G082820	Watermelon (97103) v1	wmwmbB398
Cla97C05G082820	Wax gourd	wgowmbB080
Cla97C05G082820	Wax gourd	wgowmbB193