Cla97C05G082640 (gene) Watermelon (97103) v2

Overview
NameCla97C05G082640
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr05 : 1971147 .. 1971440 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGAGAAAGGAGTGGAGCCCAACGAAGTGAGAAGGAGACAGAGATGGTCGCAGATCGGTAGGTCCTACGAAGAAGAAAATCGAGAGAAAATAAATCGACCACGATGTGAAACAACTCGTCGGAGAAAACTGTGCAGCGGCCGAAACGCCCCCACGTCGGCGACCACTCTTAAATATCGCCGACGGTTTTCACAGCGAGCCTTTGTGTCGAATTTTTTCTACAGATTAAAAGAAAATGAAATTATCTTCAATGGGAAAGTCAAAAACGAACTGATTTCGCCGCAAAAGTAA

mRNA sequence

ATGATGGAGAAAGGAGTGGAGCCCAACGAAGTGAGAAGGAGACAGAGATGGTCGCAGATCGGTAGGTCCTACGAAGAAGAAAATCGAGAGAAAATAAATCGACCACGATGTGAAACAACTCGTCGGAGAAAACTGTGCAGCGGCCGAAACGCCCCCACGTCGGCGACCACTCTTAAATATCGCCGACGGTTTTCACAGCGAGCCTTTGTGTCGAATTTTTTCTACAGATTAAAAGAAAATGAAATTATCTTCAATGGGAAAGTCAAAAACGAACTGATTTCGCCGCAAAAGTAA

Coding sequence (CDS)

ATGATGGAGAAAGGAGTGGAGCCCAACGAAGTGAGAAGGAGACAGAGATGGTCGCAGATCGGTAGGTCCTACGAAGAAGAAAATCGAGAGAAAATAAATCGACCACGATGTGAAACAACTCGTCGGAGAAAACTGTGCAGCGGCCGAAACGCCCCCACGTCGGCGACCACTCTTAAATATCGCCGACGGTTTTCACAGCGAGCCTTTGTGTCGAATTTTTTCTACAGATTAAAAGAAAATGAAATTATCTTCAATGGGAAAGTCAAAAACGAACTGATTTCGCCGCAAAAGTAA

Protein sequence

MMEKGVEPNEVRRRQRWSQIGRSYEEENREKINRPRCETTRRRKLCSGRNAPTSATTLKYRRRFSQRAFVSNFFYRLKENEIIFNGKVKNELISPQK
Homology
[Close]
BLAST of Cla97C05G082640 vs. NCBI nr
Match: KGN56588.1 (hypothetical protein Csa_3G125550 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 4.4e-23
Identity = 68/97 (70.10%), Postives = 72/97 (74.23%), Query Frame = 0 

Query: 1  MMEKGVEPNEVRRRQRWSQIGRSYEEENREKINRPRCETTRRRKLCSGRNAPTSATTLKY 60
          MMEKGVEPNEVRRRQRWSQIGRSYEEEN  K      +  RRRK CSG NAPTSATTLKY
Sbjct: 1  MMEKGVEPNEVRRRQRWSQIGRSYEEENERKSIDHDVKQPRRRKPCSGGNAPTSATTLKY 60

Query: 61 RRRFSQRAFVSNFFYRLKENEIIFNGKVKNELISPQK 98
          RRRFSQR FVS      +E+EIIFNG  +   IS QK
Sbjct: 61 RRRFSQRPFVSIILQIRRESEIIFNGIKQKIAISRQK 97

[Close]
BLAST of Cla97C05G082640 vs. TrEMBL
Match: tr|A0A0A0L4D2|A0A0A0L4D2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G125550 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.9e-23
Identity = 68/97 (70.10%), Postives = 72/97 (74.23%), Query Frame = 0 

Query: 1  MMEKGVEPNEVRRRQRWSQIGRSYEEENREKINRPRCETTRRRKLCSGRNAPTSATTLKY 60
          MMEKGVEPNEVRRRQRWSQIGRSYEEEN  K      +  RRRK CSG NAPTSATTLKY
Sbjct: 1  MMEKGVEPNEVRRRQRWSQIGRSYEEENERKSIDHDVKQPRRRKPCSGGNAPTSATTLKY 60

Query: 61 RRRFSQRAFVSNFFYRLKENEIIFNGKVKNELISPQK 98
          RRRFSQR FVS      +E+EIIFNG  +   IS QK
Sbjct: 61 RRRFSQRPFVSIILQIRRESEIIFNGIKQKIAISRQK 97

The following BLAST results are available for this feature:
BLAST of Cla97C05G082640 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN56588.14.4e-2370.10hypothetical protein Csa_3G125550 [Cucumis sativus][more]
BLAST of Cla97C05G082640 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L4D2|A0A0A0L4D2_CUCSA2.9e-2370.10Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G125550 PE=4 SV=1[more]
BLAST of Cla97C05G082640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C05G082640 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G082640.1Cla97C05G082640.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C05G082640Csa3G125550Cucumber (Chinese Long) v2cuwmbB204
Cla97C05G082640CsaV3_3G009590Cucumber (Chinese Long) v3cucwmbB206
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C05G082640Watermelon (97103) v2wmbwmbB018
Cla97C05G082640Watermelon (97103) v2wmbwmbB131
Cla97C05G082640Silver-seed gourdcarwmbB0229
Cla97C05G082640Silver-seed gourdcarwmbB0511
Cla97C05G082640Silver-seed gourdcarwmbB0647
Cla97C05G082640Silver-seed gourdcarwmbB0983
Cla97C05G082640Silver-seed gourdcarwmbB1132
Cla97C05G082640Cucumber (Gy14) v2cgybwmbB196
Cla97C05G082640Cucumber (Gy14) v2cgybwmbB362
Cla97C05G082640Cucumber (Gy14) v2cgybwmbB437
Cla97C05G082640Cucumber (Gy14) v1cgywmbB452
Cla97C05G082640Cucumber (Gy14) v1cgywmbB525
Cla97C05G082640Cucumber (Gy14) v1cgywmbB622
Cla97C05G082640Cucurbita maxima (Rimu)cmawmbB263
Cla97C05G082640Cucurbita maxima (Rimu)cmawmbB311
Cla97C05G082640Cucurbita maxima (Rimu)cmawmbB366
Cla97C05G082640Cucurbita maxima (Rimu)cmawmbB856
Cla97C05G082640Cucurbita maxima (Rimu)cmawmbB915
Cla97C05G082640Cucurbita moschata (Rifu)cmowmbB243
Cla97C05G082640Cucurbita moschata (Rifu)cmowmbB293
Cla97C05G082640Cucurbita moschata (Rifu)cmowmbB833
Cla97C05G082640Cucurbita moschata (Rifu)cmowmbB888
Cla97C05G082640Wild cucumber (PI 183967)cpiwmbB209
Cla97C05G082640Wild cucumber (PI 183967)cpiwmbB401
Cla97C05G082640Wild cucumber (PI 183967)cpiwmbB485
Cla97C05G082640Cucumber (Chinese Long) v3cucwmbB397
Cla97C05G082640Cucumber (Chinese Long) v3cucwmbB478
Cla97C05G082640Cucumber (Chinese Long) v2cuwmbB460
Cla97C05G082640Bottle gourd (USVL1VR-Ls)lsiwmbB020
Cla97C05G082640Bottle gourd (USVL1VR-Ls)lsiwmbB333
Cla97C05G082640Melon (DHL92) v3.6.1medwmbB026
Cla97C05G082640Melon (DHL92) v3.6.1medwmbB116
Cla97C05G082640Melon (DHL92) v3.6.1medwmbB423
Cla97C05G082640Melon (DHL92) v3.5.1mewmbB029
Cla97C05G082640Melon (DHL92) v3.5.1mewmbB125
Cla97C05G082640Melon (DHL92) v3.5.1mewmbB434
Cla97C05G082640Watermelon (Charleston Gray)wcgwmbB229
Cla97C05G082640Watermelon (Charleston Gray)wcgwmbB264
Cla97C05G082640Watermelon (97103) v1wmwmbB206
Cla97C05G082640Watermelon (97103) v1wmwmbB265
Cla97C05G082640Watermelon (97103) v1wmwmbB398
Cla97C05G082640Wax gourdwgowmbB077
Cla97C05G082640Wax gourdwgowmbB193