Cla97C05G081940 (gene) Watermelon (97103) v2

Overview
NameCla97C05G081940
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionPentatricopeptide repeat-containing protein, putative
LocationCla97Chr05 : 1505743 .. 1507150 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTGATATTGGGATCGTCTGGAAGTTGTTTTATCAGATACCTTACAAGGATGTTGTTTTGTGGAGTGTCATGATCTCAGCATGCGTGAAAAATGGTCAGTATAATGAAGCATTTGATATTTTCAGAGAGATGCAAAATCAGGGAGGTTCAACCAAACCAAGTAAGTATTTTACCTGCTTGTGCTGATTTTGGTGTGCGTTTTCAATGAGAAGAAAATTGTAAGTCTACTGAATGCTTGTTCTTAATTGGGCGCTCAGGAGCTGGGAGAAAGTATCCAAGCTCATATAACAAAATGGGGGTACTCATCTAATACACATTTGATGTCAGCTTTGGTTGTTTTTTACTGCACACTTGGAAGGATAAAGCTAGGAAAACATGTTTTTGATGAGATTTCAACGAAGGAAGTAATTTGTTTGAGTTCGACGATTAAGGGTACGGAATGAATGGATGTGGGAGTGAGGCACTCAATACATTTTCAGACATGTTAAGTTATGGTTTAAAGCCTAATGGGGTGGTCTTCGTCTCTCTTTTATCTGCTTGTGCTCATTGTGGATTGGAAAAGGAAGGTTGGATATGGTTTCATTCGATGATTGACAAGTATGGCATTACTCCAATGGTGGCACATTATGCTTGTATCGTAGCTCATTCGGCAAGGAAAAATTAGAGAAGCTGTTAAATTTGTGAAGAAATGCCGGTAGAACCTGATACAGGAATCTGGGGTGCTCTTTTTTTCTGGTAGCAAATTAACTCATAGGCCCTGACATTGCAGATTCTTTTGTAAACAGCTCACTGATTGAAAATCCTAACAATATGCAATGTTACTCAACTTTTGTGCCGAGGAAAACAAATGGGAAGATACCCAATAAGGAATTTTGCTACCTTAAGATCGTTATAGTTATGGTCGCTGTTCCTCGGGGCTTCAGTTGCCGGCTCCCCTATTATGAGGTCACCAACTTCTTTGACTTTTTGGCACTGGGAAGGCGTCATACATGGTCTTACGGCTTTGCAAAGTCCTGTGTTTTTGGCAAATAATCGTCTGGGCCTAGTTACTGCAACCCCTTCTTCCATGTCAAGGCTCTTACTGTATCCAGTTGGAAAACTGATGGATGCACGGAAATTTGTCAGGTAACTCATACAGCTGATTTAGTGACTTCAACGTATTCATGTTTACTGATGATCATTGAATTCCATTAAATGTTGTGAGTTTATCTTTAATTTCAATGGAATTAATGACCTTAGTAGTTTTTATTTGCTTGAAACATCACTATGCCATAACACAACCTATCTATTTATGGCGTATGAAAAATGGTAGAGGATGTAGAGGAGCATCACAATAACCTACAAAATCGTTTGTTGAAAACATCTTTGGCCTTCTGCTTGAAGGTTCAAGCTATCCAATACATAA

mRNA sequence

ATGCGTGATATTGGGATCGTCTGGAAGTTGTTTTATCAGATACCTTACAAGGATGTTGTTTTGTGGAGTGTCATGATCTCAGCATGCGTGAAAAATGGTCAGTATAATGAAGCATTTGATATTTTCAGAGAGATGCAAAATCAGGGAGGTTCAACCAAACCAAGGTACGGAATGAATGGATGTGGGAGTGAGGCACTCAATACATTTTCAGACATGTTAAGTTATGGTTTAAAGCCTAATGGGGTGGTCTTCGTCTCTCTTTTATCTGCTTGTGCTCATTGTGGATTGGAAAAGGAAGGTTGGATATGGTTTCATTCGATGATTGACAAGTATGGCATTACTCCAATGGTGGCACATTATGCTTGTATCTTATGGTCGCTGTTCCTCGGGGCTTCAGTTGCCGGCTCCCCTATTATGAGGTCACCAACTTCTTTGACTTTTTGGCACTGGGAAGGCGTCATACATGGTCTTACGGCTTTGCAAAGTCCTGTGTTTTTGGCAAATAATCGTCTGGGCCTAGTTACTGCAACCCCTTCTTCCATGTCAAGGCTCTTACTGTATCCAGTTGGAAAACTGATGGATGCACGGAAATTTGTCAGGTTCAAGCTATCCAATACATAA

Coding sequence (CDS)

ATGCGTGATATTGGGATCGTCTGGAAGTTGTTTTATCAGATACCTTACAAGGATGTTGTTTTGTGGAGTGTCATGATCTCAGCATGCGTGAAAAATGGTCAGTATAATGAAGCATTTGATATTTTCAGAGAGATGCAAAATCAGGGAGGTTCAACCAAACCAAGGTACGGAATGAATGGATGTGGGAGTGAGGCACTCAATACATTTTCAGACATGTTAAGTTATGGTTTAAAGCCTAATGGGGTGGTCTTCGTCTCTCTTTTATCTGCTTGTGCTCATTGTGGATTGGAAAAGGAAGGTTGGATATGGTTTCATTCGATGATTGACAAGTATGGCATTACTCCAATGGTGGCACATTATGCTTGTATCTTATGGTCGCTGTTCCTCGGGGCTTCAGTTGCCGGCTCCCCTATTATGAGGTCACCAACTTCTTTGACTTTTTGGCACTGGGAAGGCGTCATACATGGTCTTACGGCTTTGCAAAGTCCTGTGTTTTTGGCAAATAATCGTCTGGGCCTAGTTACTGCAACCCCTTCTTCCATGTCAAGGCTCTTACTGTATCCAGTTGGAAAACTGATGGATGCACGGAAATTTGTCAGGTTCAAGCTATCCAATACATAA

Protein sequence

MRDIGIVWKLFYQIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTKPRYGMNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKEGWIWFHSMIDKYGITPMVAHYACILWSLFLGASVAGSPIMRSPTSLTFWHWEGVIHGLTALQSPVFLANNRLGLVTATPSSMSRLLLYPVGKLMDARKFVRFKLSNT
Homology
[Close]
BLAST of Cla97C05G081940 vs. NCBI nr
Match: XP_022147491.1 (pentatricopeptide repeat-containing protein DOT4, chloroplastic isoform X1 [Momordica charantia] >XP_022147492.1 pentatricopeptide repeat-containing protein DOT4, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 134.0 bits (336), Expect = 5.7e-28
Identity = 65/115 (56.52%), Postives = 76/115 (66.09%), Query Frame = 0 

Query: 10  LFYQIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTKPRYGMNGCGSEALNTF 69
           +F +I  KD++ WS MI                             YGMNGCG+EAL+TF
Sbjct: 446 VFDEISTKDLICWSTMIKG---------------------------YGMNGCGNEALDTF 505

Query: 70  SDMLSYGLKPNGVVFVSLLSACAHCGLEKEGWIWFHSMIDKYGITPMVAHYACIL 125
           SDMLS GLKPNGV+FVSLLSACA CG+EKEGW+WF SMIDKY ITP VAHYAC++
Sbjct: 506 SDMLSCGLKPNGVLFVSLLSACAQCGIEKEGWVWFRSMIDKYNITPTVAHYACMV 533

[Close]
BLAST of Cla97C05G081940 vs. NCBI nr
Match: XP_022934182.1 (pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 134.0 bits (336), Expect = 5.7e-28
Identity = 67/124 (54.03%), Postives = 79/124 (63.71%), Query Frame = 0 

Query: 1   MRDIGIVWKLFYQIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTKPRYGMNG 60
           +R + +   +FY+I  KD+V WS MI                             YGMNG
Sbjct: 436 LRRVKLGEHVFYEILTKDLVCWSTMIKG---------------------------YGMNG 495

Query: 61  CGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKEGWIWFHSMIDKYGITPMVAHY 120
            G EALNTFSDMLSYGLKPNG +FVSLLSACA CGLEK GW+WF+SMID+Y ITP VAHY
Sbjct: 496 YGKEALNTFSDMLSYGLKPNGTLFVSLLSACAQCGLEKAGWMWFNSMIDEYNITPTVAHY 532

Query: 121 ACIL 125
           AC++
Sbjct: 556 ACMV 532

[Close]
BLAST of Cla97C05G081940 vs. NCBI nr
Match: XP_023538701.1 (pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023538702.1 pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023538703.1 pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023538704.1 pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134.0 bits (336), Expect = 5.7e-28
Identity = 66/124 (53.23%), Postives = 80/124 (64.52%), Query Frame = 0 

Query: 1   MRDIGIVWKLFYQIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTKPRYGMNG 60
           +R + +   +F +I  KD+V WS MI                             YG NG
Sbjct: 436 LRRVKLGEHVFDEIVTKDLVCWSTMIKG---------------------------YGTNG 495

Query: 61  CGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKEGWIWFHSMIDKYGITPMVAHY 120
           CG+EALNTFSDMLSYGLKPNG +FVSLLSACA CGLEKEGW+WF++MID+Y ITP VAHY
Sbjct: 496 CGNEALNTFSDMLSYGLKPNGTLFVSLLSACAQCGLEKEGWMWFNAMIDEYNITPTVAHY 532

Query: 121 ACIL 125
           AC++
Sbjct: 556 ACMV 532

[Close]
BLAST of Cla97C05G081940 vs. NCBI nr
Match: XP_022147493.1 (pentatricopeptide repeat-containing protein DOT4, chloroplastic isoform X2 [Momordica charantia])

HSP 1 Score: 132.9 bits (333), Expect = 1.3e-27
Identity = 72/166 (43.37%), Postives = 92/166 (55.42%), Query Frame = 0 

Query: 4   IGIVWKLFYQIPYKDVVLWSVMISA---------------------------CVKN---- 63
           +G+   +F ++  KD++ WS MISA                           C  N    
Sbjct: 339 LGLAKLIFDELVDKDIIAWSAMISAYSHVNACSSLGAQELGESIHAHIMKSGCSSNTHLM 398

Query: 64  ----------GQYNEAFDIFREMQNQG----GSTKPRYGMNGCGSEALNTFSDMLSYGLK 123
                     G+  +   +F E+  +      +    YGMNGCG+EAL+TFSDMLS GLK
Sbjct: 399 SAFVDLYCTLGRIKQGKHVFDEISTKDLICWSTMIKGYGMNGCGNEALDTFSDMLSCGLK 458

Query: 124 PNGVVFVSLLSACAHCGLEKEGWIWFHSMIDKYGITPMVAHYACIL 125
           PNGV+FVSLLSACA CG+EKEGW+WF SMIDKY ITP VAHYAC++
Sbjct: 459 PNGVLFVSLLSACAQCGIEKEGWVWFRSMIDKYNITPTVAHYACMV 504

[Close]
BLAST of Cla97C05G081940 vs. NCBI nr
Match: XP_022974593.1 (pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Cucurbita maxima] >XP_022974594.1 pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 129.0 bits (323), Expect = 1.8e-26
Identity = 66/124 (53.23%), Postives = 79/124 (63.71%), Query Frame = 0 

Query: 1   MRDIGIVWKLFYQIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTKPRYGMNG 60
           +R + +   +F +I  KD+V WS MI                             YGMNG
Sbjct: 436 LRRVKLGEHVFDEILTKDLVCWSTMIKG---------------------------YGMNG 495

Query: 61  CGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKEGWIWFHSMIDKYGITPMVAHY 120
            G+EALNTFSDMLSYGLK NG +FVSLLSACA CGLEKEGW+WF+SMID+Y ITP VAHY
Sbjct: 496 YGNEALNTFSDMLSYGLKLNGTLFVSLLSACAQCGLEKEGWMWFNSMIDEYNITPTVAHY 532

Query: 121 ACIL 125
           AC++
Sbjct: 556 ACMV 532

[Close]
BLAST of Cla97C05G081940 vs. TrEMBL
Match: tr|A0A1S4DSI8|A0A1S4DSI8_CUCME (LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g56570 OS=Cucumis melo OX=3656 GN=LOC103484166 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.5e-26
Identity = 64/115 (55.65%), Postives = 74/115 (64.35%), Query Frame = 0 

Query: 10  LFYQIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTKPRYGMNGCGSEALNTF 69
           +F +I  KD++ W+ MI                             YG+NGCG++ALNTF
Sbjct: 445 VFDEISTKDLICWNAMIKG---------------------------YGLNGCGNKALNTF 504

Query: 70  SDMLSYGLKPNGVVFVSLLSACAHCGLEKEGWIWFHSMIDKYGITPMVAHYACIL 125
           SDMLSYGLKPNGVVF SLLSACA CGLEKE  +WF SMIDKYGITP  AHYACI+
Sbjct: 505 SDMLSYGLKPNGVVFASLLSACAQCGLEKEVRMWFRSMIDKYGITPTEAHYACIV 532

[Close]
BLAST of Cla97C05G081940 vs. TrEMBL
Match: tr|A0A0A0L489|A0A0A0L489_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122420 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 6.6e-25
Identity = 55/69 (79.71%), Postives = 62/69 (89.86%), Query Frame = 0 

Query: 56  YGMNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKEGWIWFHSMIDKYGITP 115
           YG+NGCG++ALNTFSDMLSYGLKPNGVVF SLLSACA CGLEKE  +WF SM D+YGITP
Sbjct: 464 YGLNGCGNKALNTFSDMLSYGLKPNGVVFASLLSACAQCGLEKEVRMWFRSMNDEYGITP 523

Query: 116 MVAHYACIL 125
            +AHYACI+
Sbjct: 524 TMAHYACIV 532

[Close]
BLAST of Cla97C05G081940 vs. TrEMBL
Match: tr|A0A1U7ZQG1|A0A1U7ZQG1_NELNU (pentatricopeptide repeat-containing protein At1g11290, chloroplastic-like OS=Nelumbo nucifera OX=4432 GN=LOC104596270 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.7e-23
Identity = 64/157 (40.76%), Postives = 83/157 (52.87%), Query Frame = 0 

Query: 10  LFYQIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTKPRYGMNGCGSEALNTF 69
           LF ++P KD++ WS MI                             YG+NGCG EAL+TF
Sbjct: 369 LFDRLPTKDLICWSSMIHG---------------------------YGINGCGIEALDTF 428

Query: 70  SDMLSYGLKPNGVVFVSLLSACAHCGLEKEGWIWFHSMIDKYGITPMVAHYACILWSLFL 129
           S ML  G KPN +VF+S+LSACAHCGL  EGW WF SM +KYGITP + HYAC++  L  
Sbjct: 429 SKMLQCGTKPNDIVFISVLSACAHCGLIDEGWGWFSSMEEKYGITPTLPHYACMVDLLSR 488

Query: 130 GASV--AGSPIMRSPTSLTFWHWEGVIHGLTALQSPV 165
              +  A   + R P       W  ++ G  + Q P+
Sbjct: 489 RGYIEEALQFVYRMPVEPDANIWGALLSGCRSSQGPI 498

[Close]
BLAST of Cla97C05G081940 vs. TrEMBL
Match: tr|A0A0V0H0K5|A0A0V0H0K5_SOLCH (Putative pentatricopeptide repeat-containing protein-like (Fragment) OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.0e-22
Identity = 55/108 (50.93%), Postives = 74/108 (68.52%), Query Frame = 0 

Query: 21  LWSVMISACVKNGQYNEAFDIFREMQNQG----GSTKPRYGMNGCGSEALNTFSDMLSYG 80
           L S +I    + G+ ++   IF E  N       S    YG+NG G+EAL  FSDML+ G
Sbjct: 67  LISSLIDMYCRFGRISQGQAIFSECPNVDLICWSSMINGYGINGHGNEALQCFSDMLNSG 126

Query: 81  LKPNGVVFVSLLSACAHCGLEKEGWIWFHSMIDKYGITPMVAHYACIL 125
           +KPN VVFVS+LSAC+HCGLE EGW WFH+M +++G+TP +AHYAC++
Sbjct: 127 IKPNDVVFVSVLSACSHCGLEYEGWNWFHAMEEQFGVTPKLAHYACVV 174

[Close]
BLAST of Cla97C05G081940 vs. TrEMBL
Match: tr|A0A0K9RKN0|A0A0K9RKN0_SPIOL (Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_055690 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 5.2e-22
Identity = 55/108 (50.93%), Postives = 71/108 (65.74%), Query Frame = 0 

Query: 21  LWSVMISACVKNGQYNEAFDIFREMQNQG----GSTKPRYGMNGCGSEALNTFSDMLSYG 80
           L S +I    K G+ +E   +F E   +      S    YG+NGC +EAL  FS+ML+ G
Sbjct: 349 LISALIDLYCKFGRTDEGKSLFNESSIKDLIIWSSMINGYGLNGCANEALEIFSNMLNSG 408

Query: 81  LKPNGVVFVSLLSACAHCGLEKEGWIWFHSMIDKYGITPMVAHYACIL 125
           +KPN VVFVS+LSAC+HCGLE EGW WF+ M +KYG  P VAHYAC++
Sbjct: 409 VKPNDVVFVSVLSACSHCGLEDEGWYWFNCMQEKYGFVPKVAHYACMV 456

[Close]
BLAST of Cla97C05G081940 vs. Swiss-Prot
Match: sp|O04659|PP398_ARATH (Pentatricopeptide repeat-containing protein At5g27110 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E14 PE=2 SV=2)

HSP 1 Score: 86.7 bits (213), Expect = 3.4e-16
Identity = 46/117 (39.32%), Postives = 63/117 (53.85%), Query Frame = 0 

Query: 8   WKLFYQIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTKPRYGMNGCGSEALN 67
           +++F  IP KDVV W+VMISA                           YG +G   EAL 
Sbjct: 465 FRIFNSIPKKDVVSWTVMISA---------------------------YGSHGQPREALY 524

Query: 68  TFSDMLSYGLKPNGVVFVSLLSACAHCGLEKEGWIWFHSMIDKYGITPMVAHYACIL 125
            F +M  +GLKP+GV  +++LSAC H GL  EG  +F  M  KYGI P++ HY+C++
Sbjct: 525 QFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHYSCMI 554

[Close]
BLAST of Cla97C05G081940 vs. Swiss-Prot
Match: sp|Q9LW32|PP258_ARATH (Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H34 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 9.8e-16
Identity = 40/111 (36.04%), Postives = 66/111 (59.46%), Query Frame = 0 

Query: 18  DVVLWSVMISACVKNGQYNEAFDIFREMQNQG----GSTKPRYGMNGCGSEALNTFSDML 77
           DV++ + +I    K G+   A   F  M+N+      +    YGM+G  ++AL  F  M+
Sbjct: 321 DVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMI 380

Query: 78  SYGLKPNGVVFVSLLSACAHCGLEKEGWIWFHSMIDKYGITPMVAHYACIL 125
             G++PN + FVS+L+AC+H GL  EGW WF++M  ++G+ P + HY C++
Sbjct: 381 DSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMV 431

[Close]
BLAST of Cla97C05G081940 vs. Swiss-Prot
Match: sp|P93005|PP181_ARATH (Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E19 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-15
Identity = 42/115 (36.52%), Postives = 61/115 (53.04%), Query Frame = 0 

Query: 10  LFYQIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTKPRYGMNGCGSEALNTF 69
           +F + P KDVV W+ MIS    NGQ                           G EAL  F
Sbjct: 480 VFRRTPNKDVVSWNAMISGLSHNGQ---------------------------GDEALELF 539

Query: 70  SDMLSYGLKPNGVVFVSLLSACAHCGLEKEGWIWFHSMIDKYGITPMVAHYACIL 125
            +ML+ G++P+ V FV+++SAC+H G  + GW +F+ M D+ G+ P V HYAC++
Sbjct: 540 EEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMV 567

[Close]
BLAST of Cla97C05G081940 vs. Swiss-Prot
Match: sp|Q9SUH6|PP341_ARATH (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX=3702 GN=DYW9 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.9e-14
Identity = 56/198 (28.28%), Postives = 76/198 (38.38%), Query Frame = 0 

Query: 1   MRDIGIVWKLFYQIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTKP------ 60
           + +I    KLF + P K +  W+ MIS   +NG   +A  +FREMQ    S  P      
Sbjct: 367 LNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCI 426

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 427 LSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNE 486

Query: 121 --------RYGMNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKEGWIWFHS 125
                    YG++G G EALN F +ML+ G+ P  V F+ +L AC+H GL KEG   F+S
Sbjct: 487 VTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNS 546

[Close]
BLAST of Cla97C05G081940 vs. Swiss-Prot
Match: sp|Q9LND4|PPR14_ARATH (Pentatricopeptide repeat-containing protein At1g06140, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E61 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.1e-14
Identity = 44/115 (38.26%), Postives = 58/115 (50.43%), Query Frame = 0 

Query: 10  LFYQIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTKPRYGMNGCGSEALNTF 69
           +F  +P ++V+ WS MI+A                           +G+NG   EAL+ F
Sbjct: 369 VFDMMPERNVISWSSMINA---------------------------FGINGLFEEALDCF 428

Query: 70  SDMLSYGLKPNGVVFVSLLSACAHCGLEKEGWIWFHSMIDKYGITPMVAHYACIL 125
             M S  + PN V FVSLLSAC+H G  KEGW  F SM   YG+ P   HYAC++
Sbjct: 429 HKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEEEHYACMV 456

[Close]
BLAST of Cla97C05G081940 vs. TAIR10
Match: AT5G27110.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 86.7 bits (213), Expect = 1.9e-17
Identity = 46/117 (39.32%), Postives = 63/117 (53.85%), Query Frame = 0 

Query: 8   WKLFYQIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTKPRYGMNGCGSEALN 67
           +++F  IP KDVV W+VMISA                           YG +G   EAL 
Sbjct: 465 FRIFNSIPKKDVVSWTVMISA---------------------------YGSHGQPREALY 524

Query: 68  TFSDMLSYGLKPNGVVFVSLLSACAHCGLEKEGWIWFHSMIDKYGITPMVAHYACIL 125
            F +M  +GLKP+GV  +++LSAC H GL  EG  +F  M  KYGI P++ HY+C++
Sbjct: 525 QFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHYSCMI 554

[Close]
BLAST of Cla97C05G081940 vs. TAIR10
Match: AT3G26782.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 85.1 bits (209), Expect = 5.5e-17
Identity = 40/111 (36.04%), Postives = 66/111 (59.46%), Query Frame = 0 

Query: 18  DVVLWSVMISACVKNGQYNEAFDIFREMQNQG----GSTKPRYGMNGCGSEALNTFSDML 77
           DV++ + +I    K G+   A   F  M+N+      +    YGM+G  ++AL  F  M+
Sbjct: 321 DVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMI 380

Query: 78  SYGLKPNGVVFVSLLSACAHCGLEKEGWIWFHSMIDKYGITPMVAHYACIL 125
             G++PN + FVS+L+AC+H GL  EGW WF++M  ++G+ P + HY C++
Sbjct: 381 DSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMV 431

[Close]
BLAST of Cla97C05G081940 vs. TAIR10
Match: AT2G33680.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 84.3 bits (207), Expect = 9.3e-17
Identity = 42/115 (36.52%), Postives = 61/115 (53.04%), Query Frame = 0 

Query: 10  LFYQIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTKPRYGMNGCGSEALNTF 69
           +F + P KDVV W+ MIS    NGQ                           G EAL  F
Sbjct: 480 VFRRTPNKDVVSWNAMISGLSHNGQ---------------------------GDEALELF 539

Query: 70  SDMLSYGLKPNGVVFVSLLSACAHCGLEKEGWIWFHSMIDKYGITPMVAHYACIL 125
            +ML+ G++P+ V FV+++SAC+H G  + GW +F+ M D+ G+ P V HYAC++
Sbjct: 540 EEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMV 567

[Close]
BLAST of Cla97C05G081940 vs. TAIR10
Match: AT4G30700.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 80.9 bits (198), Expect = 1.0e-15
Identity = 56/198 (28.28%), Postives = 76/198 (38.38%), Query Frame = 0 

Query: 1   MRDIGIVWKLFYQIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTKP------ 60
           + +I    KLF + P K +  W+ MIS   +NG   +A  +FREMQ    S  P      
Sbjct: 367 LNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCI 426

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 427 LSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNE 486

Query: 121 --------RYGMNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKEGWIWFHS 125
                    YG++G G EALN F +ML+ G+ P  V F+ +L AC+H GL KEG   F+S
Sbjct: 487 VTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNS 546

[Close]
BLAST of Cla97C05G081940 vs. TAIR10
Match: AT1G06140.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 79.7 bits (195), Expect = 2.3e-15
Identity = 44/115 (38.26%), Postives = 58/115 (50.43%), Query Frame = 0 

Query: 10  LFYQIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTKPRYGMNGCGSEALNTF 69
           +F  +P ++V+ WS MI+A                           +G+NG   EAL+ F
Sbjct: 369 VFDMMPERNVISWSSMINA---------------------------FGINGLFEEALDCF 428

Query: 70  SDMLSYGLKPNGVVFVSLLSACAHCGLEKEGWIWFHSMIDKYGITPMVAHYACIL 125
             M S  + PN V FVSLLSAC+H G  KEGW  F SM   YG+ P   HYAC++
Sbjct: 429 HKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEEEHYACMV 456

The following BLAST results are available for this feature:
BLAST of Cla97C05G081940 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022147491.15.7e-2856.52pentatricopeptide repeat-containing protein DOT4, chloroplastic isoform X1 [Momo... [more]
XP_022934182.15.7e-2854.03pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Cucurbita ... [more]
XP_023538701.15.7e-2853.23pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Cucurbita ... [more]
XP_022147493.11.3e-2743.37pentatricopeptide repeat-containing protein DOT4, chloroplastic isoform X2 [Momo... [more]
XP_022974593.11.8e-2653.23pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Cucurbita ... [more]
BLAST of Cla97C05G081940 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DSI8|A0A1S4DSI8_CUCME3.5e-2655.65LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g56... [more]
tr|A0A0A0L489|A0A0A0L489_CUCSA6.6e-2579.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122420 PE=4 SV=1[more]
tr|A0A1U7ZQG1|A0A1U7ZQG1_NELNU4.7e-2340.76pentatricopeptide repeat-containing protein At1g11290, chloroplastic-like OS=Nel... [more]
tr|A0A0V0H0K5|A0A0V0H0K5_SOLCH4.0e-2250.93Putative pentatricopeptide repeat-containing protein-like (Fragment) OS=Solanum ... [more]
tr|A0A0K9RKN0|A0A0K9RKN0_SPIOL5.2e-2250.93Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_055690 PE=4 SV=1[more]
BLAST of Cla97C05G081940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O04659|PP398_ARATH3.4e-1639.32Pentatricopeptide repeat-containing protein At5g27110 OS=Arabidopsis thaliana OX... [more]
sp|Q9LW32|PP258_ARATH9.8e-1636.04Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidop... [more]
sp|P93005|PP181_ARATH1.7e-1536.52Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana OX... [more]
sp|Q9SUH6|PP341_ARATH1.9e-1428.28Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX... [more]
sp|Q9LND4|PPR14_ARATH4.1e-1438.26Pentatricopeptide repeat-containing protein At1g06140, mitochondrial OS=Arabidop... [more]
BLAST of Cla97C05G081940 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G27110.11.9e-1739.32Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G26782.15.5e-1736.04Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT2G33680.19.3e-1736.52Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT4G30700.11.0e-1528.28Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G06140.12.3e-1538.26Pentatricopeptide repeat (PPR) superfamily protein[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009451 RNA modification
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G081940.1Cla97C05G081940.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 82..110
e-value: 0.076
score: 13.2
coord: 56..77
e-value: 0.51
score: 10.6
coord: 20..49
e-value: 4.0E-9
score: 36.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 20..49
e-value: 7.7E-9
score: 33.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 18..52
score: 11.871
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 80..115
score: 7.552
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 55..130
e-value: 3.6E-12
score: 48.0
coord: 1..54
e-value: 6.0E-9
score: 37.4
NoneNo IPR availablePANTHERPTHR24015:SF47SUBFAMILY NOT NAMEDcoord: 10..48
NoneNo IPR availablePANTHERPTHR24015:SF47SUBFAMILY NOT NAMEDcoord: 58..123
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 58..123
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 10..48
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..29
score: 5.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C05G081940Bhi01G000257Wax gourdwgowmbB182
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C05G081940Watermelon (97103) v2wmbwmbB130
Cla97C05G081940Silver-seed gourdcarwmbB0405
Cla97C05G081940Silver-seed gourdcarwmbB0513
Cla97C05G081940Silver-seed gourdcarwmbB0773
Cla97C05G081940Silver-seed gourdcarwmbB1041
Cla97C05G081940Cucumber (Gy14) v2cgybwmbB196
Cla97C05G081940Cucumber (Gy14) v2cgybwmbB216
Cla97C05G081940Cucumber (Gy14) v1cgywmbB452
Cla97C05G081940Cucumber (Gy14) v1cgywmbB524
Cla97C05G081940Cucurbita maxima (Rimu)cmawmbB263
Cla97C05G081940Cucurbita maxima (Rimu)cmawmbB344
Cla97C05G081940Cucurbita maxima (Rimu)cmawmbB429
Cla97C05G081940Cucurbita maxima (Rimu)cmawmbB856
Cla97C05G081940Cucurbita maxima (Rimu)cmawmbB861
Cla97C05G081940Cucurbita moschata (Rifu)cmowmbB243
Cla97C05G081940Cucurbita moschata (Rifu)cmowmbB410
Cla97C05G081940Cucurbita moschata (Rifu)cmowmbB833
Cla97C05G081940Cucurbita moschata (Rifu)cmowmbB834
Cla97C05G081940Wild cucumber (PI 183967)cpiwmbB209
Cla97C05G081940Wild cucumber (PI 183967)cpiwmbB232
Cla97C05G081940Cucumber (Chinese Long) v3cucwmbB206
Cla97C05G081940Cucumber (Chinese Long) v3cucwmbB227
Cla97C05G081940Cucumber (Chinese Long) v2cuwmbB204
Cla97C05G081940Cucumber (Chinese Long) v2cuwmbB226
Cla97C05G081940Bottle gourd (USVL1VR-Ls)lsiwmbB331
Cla97C05G081940Bottle gourd (USVL1VR-Ls)lsiwmbB333
Cla97C05G081940Melon (DHL92) v3.6.1medwmbB423
Cla97C05G081940Melon (DHL92) v3.6.1medwmbB436
Cla97C05G081940Melon (DHL92) v3.5.1mewmbB434
Cla97C05G081940Melon (DHL92) v3.5.1mewmbB437
Cla97C05G081940Watermelon (Charleston Gray)wcgwmbB229
Cla97C05G081940Watermelon (Charleston Gray)wcgwmbB231
Cla97C05G081940Watermelon (97103) v1wmwmbB206
Cla97C05G081940Watermelon (97103) v1wmwmbB210