Cla97C05G081330 (gene) Watermelon (97103) v2

Overview
NameCla97C05G081330
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptionexosome complex component RRP41
LocationCla97Chr05 : 1101237 .. 1101826 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCACGCTATTGCAGAACTCCTTTTAGGTCGCACACTCTTCAAACACAAGGCCAATGATATTAATGGGAAACTTGGCTTGAAATTAGCTACATAACATTCAAAGACTCAGTAGTGACCTAATTTTCCAACTCCATTATTTTTGTAATGTAACTATGATCTTTTTGTTTTATAAATGCTTATAGGAGGAACTTTGCCTAATTGGCTGAGTTTCCCCCATCTTGGTTTCTCTACTCGTTGTCAATGTGTAATGTTTTGTCTTGAGTGGTAGTGACTTGAAGAGTCTGGACTGCTTGGTTCATAAGCATGAAACATATAGATGTAGACTTATAGTGCACTTAGTTTTCAAGCTTGTTATGAAGAACTTAGATTCATACATATTTCCAAGTTTTCTTGCCTGCAGGTACTACTAGATCGGCATACATCAATGCTGCAACTGTGGCTCTTGCAACTGCTGGAATTTCCATGAGTGATAATGTTACTTCCTGCACTGCTGGCTATCTCAATGACGCTTCTCTGGTCGGTAATTTATTCCTCCGCACCCTCATTCAGTCCCATGTTAAAACATGTGAGGAAACCTTTAGGTGA

mRNA sequence

ATGGCTCACGCTATTGCAGAACTCCTTTTAGGTACTACTAGATCGGCATACATCAATGCTGCAACTGTGGCTCTTGCAACTGCTGGAATTTCCATGAGTGATAATGTTACTTCCTGCACTGCTGGCTATCTCAATGACGCTTCTCTGGTCGGTAATTTATTCCTCCGCACCCTCATTCAGTCCCATGTTAAAACATGTGAGGAAACCTTTAGGTGA

Coding sequence (CDS)

ATGGCTCACGCTATTGCAGAACTCCTTTTAGGTACTACTAGATCGGCATACATCAATGCTGCAACTGTGGCTCTTGCAACTGCTGGAATTTCCATGAGTGATAATGTTACTTCCTGCACTGCTGGCTATCTCAATGACGCTTCTCTGGTCGGTAATTTATTCCTCCGCACCCTCATTCAGTCCCATGTTAAAACATGTGAGGAAACCTTTAGGTGA

Protein sequence

MAHAIAELLLGTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVGNLFLRTLIQSHVKTCEETFR
Homology
[Close]
BLAST of Cla97C05G081330 vs. NCBI nr
Match: KYP51340.1 (Exosome complex exonuclease RRP41 [Cajanus cajan])

HSP 1 Score: 53.9 bits (128), Expect = 2.6e-04
Identity = 30/43 (69.77%), Postives = 33/43 (76.74%), Query Frame = 0 

Query: 11  GTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVGNL 54
           G TRSA INAAT+ALA AGI M D VTSC+AGYLN   L+ NL
Sbjct: 128 GGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDNL 170

[Close]
BLAST of Cla97C05G081330 vs. NCBI nr
Match: BAU03576.1 (hypothetical protein VIGAN_UM133200 [Vigna angularis var. angularis] >BAU03621.1 hypothetical protein VIGAN_UM143700 [Vigna angularis var. angularis])

HSP 1 Score: 52.8 bits (125), Expect = 5.7e-04
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 11  GTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLV 51
           G TRSA INAAT+ALA AGI M D VTSC+AGYLN+ SL+
Sbjct: 127 GGTRSACINAATLALADAGIPMRDLVTSCSAGYLNNTSLL 166

[Close]
BLAST of Cla97C05G081330 vs. NCBI nr
Match: BAU03795.1 (hypothetical protein VIGAN_UM182300 [Vigna angularis var. angularis])

HSP 1 Score: 52.8 bits (125), Expect = 5.7e-04
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 11  GTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLV 51
           G TRSA INAAT+ALA AGI M D VTSC+AGYLN+ SL+
Sbjct: 97  GGTRSACINAATLALADAGIPMRDLVTSCSAGYLNNTSLL 136

[Close]
BLAST of Cla97C05G081330 vs. NCBI nr
Match: BAU03802.1 (hypothetical protein VIGAN_UM185900 [Vigna angularis var. angularis])

HSP 1 Score: 52.8 bits (125), Expect = 5.7e-04
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 11 GTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLV 51
          G TRSA INAAT+ALA AGI M D VTSC+AGYLN+ SL+
Sbjct: 20 GGTRSACINAATLALADAGIPMRDLVTSCSAGYLNNTSLL 59

[Close]
BLAST of Cla97C05G081330 vs. NCBI nr
Match: XP_018821609.1 (PREDICTED: exosome complex component RRP41 homolog isoform X1 [Juglans regia])

HSP 1 Score: 52.8 bits (125), Expect = 5.7e-04
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 0 

Query: 11  GTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLV 51
           G TRSAYINAAT+ALA AGI + D VTSC+AGYLN   L+
Sbjct: 128 GGTRSAYINAATLALADAGIPLRDLVTSCSAGYLNSTPLL 167

[Close]
BLAST of Cla97C05G081330 vs. TrEMBL
Match: tr|A0A151S959|A0A151S959_CAJCA (Exosome complex exonuclease RRP41 OS=Cajanus cajan OX=3821 GN=KK1_026769 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.7e-04
Identity = 30/43 (69.77%), Postives = 33/43 (76.74%), Query Frame = 0 

Query: 11  GTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVGNL 54
           G TRSA INAAT+ALA AGI M D VTSC+AGYLN   L+ NL
Sbjct: 128 GGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDNL 170

[Close]
BLAST of Cla97C05G081330 vs. TrEMBL
Match: tr|A0A0S3TEU4|A0A0S3TEU4_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.UMG143700 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.8e-04
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 11  GTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLV 51
           G TRSA INAAT+ALA AGI M D VTSC+AGYLN+ SL+
Sbjct: 127 GGTRSACINAATLALADAGIPMRDLVTSCSAGYLNNTSLL 166

[Close]
BLAST of Cla97C05G081330 vs. TrEMBL
Match: tr|A0A2I4EQD7|A0A2I4EQD7_9ROSI (exosome complex component RRP41 homolog isoform X1 OS=Juglans regia OX=51240 GN=LOC108991702 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.8e-04
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 0 

Query: 11  GTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLV 51
           G TRSAYINAAT+ALA AGI + D VTSC+AGYLN   L+
Sbjct: 128 GGTRSAYINAATLALADAGIPLRDLVTSCSAGYLNSTPLL 167

[Close]
BLAST of Cla97C05G081330 vs. TrEMBL
Match: tr|A0A2I4EQE7|A0A2I4EQE7_9ROSI (exosome complex component RRP41 homolog isoform X2 OS=Juglans regia OX=51240 GN=LOC108991702 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.8e-04
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 0 

Query: 11  GTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLV 51
           G TRSAYINAAT+ALA AGI + D VTSC+AGYLN   L+
Sbjct: 115 GGTRSAYINAATLALADAGIPLRDLVTSCSAGYLNSTPLL 154

[Close]
BLAST of Cla97C05G081330 vs. TrEMBL
Match: tr|A0A0S3TFK5|A0A0S3TFK5_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.UMG182300 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.8e-04
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 11  GTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLV 51
           G TRSA INAAT+ALA AGI M D VTSC+AGYLN+ SL+
Sbjct: 97  GGTRSACINAATLALADAGIPMRDLVTSCSAGYLNNTSLL 136

[Close]
BLAST of Cla97C05G081330 vs. Swiss-Prot
Match: sp|Q9SP08|RRP41_ARATH (Exosome complex component RRP41 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP41 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.0e-04
Identity = 26/40 (65.00%), Postives = 29/40 (72.50%), Query Frame = 0 

Query: 11  GTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLV 51
           G TRSA INAAT+ALA AGI M D   SC+AGYLN   L+
Sbjct: 128 GGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLL 167

[Close]
BLAST of Cla97C05G081330 vs. TAIR10
Match: AT3G61620.1 (3'-5'-exoribonuclease family protein)

HSP 1 Score: 47.0 bits (110), Expect = 5.7e-06
Identity = 26/40 (65.00%), Postives = 29/40 (72.50%), Query Frame = 0 

Query: 11  GTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLV 51
           G TRSA INAAT+ALA AGI M D   SC+AGYLN   L+
Sbjct: 128 GGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLL 167

The following BLAST results are available for this feature:
BLAST of Cla97C05G081330 vs. NCBI nr
Match NameE-valueIdentityDescription
KYP51340.12.6e-0469.77Exosome complex exonuclease RRP41 [Cajanus cajan][more]
BAU03576.15.7e-0472.50hypothetical protein VIGAN_UM133200 [Vigna angularis var. angularis] >BAU03621.1... [more]
BAU03795.15.7e-0472.50hypothetical protein VIGAN_UM182300 [Vigna angularis var. angularis][more]
BAU03802.15.7e-0472.50hypothetical protein VIGAN_UM185900 [Vigna angularis var. angularis][more]
XP_018821609.15.7e-0470.00PREDICTED: exosome complex component RRP41 homolog isoform X1 [Juglans regia][more]
BLAST of Cla97C05G081330 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A151S959|A0A151S959_CAJCA1.7e-0469.77Exosome complex exonuclease RRP41 OS=Cajanus cajan OX=3821 GN=KK1_026769 PE=4 SV... [more]
tr|A0A0S3TEU4|A0A0S3TEU4_PHAAN3.8e-0472.50Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.UMG... [more]
tr|A0A2I4EQD7|A0A2I4EQD7_9ROSI3.8e-0470.00exosome complex component RRP41 homolog isoform X1 OS=Juglans regia OX=51240 GN=... [more]
tr|A0A2I4EQE7|A0A2I4EQE7_9ROSI3.8e-0470.00exosome complex component RRP41 homolog isoform X2 OS=Juglans regia OX=51240 GN=... [more]
tr|A0A0S3TFK5|A0A0S3TFK5_PHAAN3.8e-0472.50Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.UMG... [more]
BLAST of Cla97C05G081330 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SP08|RRP41_ARATH1.0e-0465.00Exosome complex component RRP41 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP41... [more]
BLAST of Cla97C05G081330 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G61620.15.7e-0665.003'-5'-exoribonuclease family protein[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027408PNPase/RNase_PH_dom_sf
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G081330.1Cla97C05G081330.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027408PNPase/RNase PH domain superfamilyGENE3DG3DSA:3.30.230.70coord: 2..71
e-value: 6.2E-9
score: 37.4

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C05G081330Watermelon (97103) v2wmbwmbB016
Cla97C05G081330Watermelon (97103) v2wmbwmbB130
Cla97C05G081330Watermelon (97103) v2wmbwmbB136
Cla97C05G081330Silver-seed gourdcarwmbB0513
Cla97C05G081330Silver-seed gourdcarwmbB0627
Cla97C05G081330Silver-seed gourdcarwmbB1041
Cla97C05G081330Silver-seed gourdcarwmbB1047
Cla97C05G081330Cucumber (Gy14) v2cgybwmbB196
Cla97C05G081330Cucumber (Gy14) v2cgybwmbB294
Cla97C05G081330Cucumber (Gy14) v2cgybwmbB364
Cla97C05G081330Cucumber (Gy14) v2cgybwmbB444
Cla97C05G081330Cucumber (Gy14) v1cgywmbB144
Cla97C05G081330Cucumber (Gy14) v1cgywmbB226
Cla97C05G081330Cucumber (Gy14) v1cgywmbB381
Cla97C05G081330Cucumber (Gy14) v1cgywmbB452
Cla97C05G081330Cucurbita maxima (Rimu)cmawmbB000
Cla97C05G081330Cucurbita maxima (Rimu)cmawmbB263
Cla97C05G081330Cucurbita maxima (Rimu)cmawmbB344
Cla97C05G081330Cucurbita maxima (Rimu)cmawmbB345
Cla97C05G081330Cucurbita maxima (Rimu)cmawmbB429
Cla97C05G081330Cucurbita maxima (Rimu)cmawmbB652
Cla97C05G081330Cucurbita maxima (Rimu)cmawmbB761
Cla97C05G081330Cucurbita maxima (Rimu)cmawmbB860
Cla97C05G081330Cucurbita moschata (Rifu)cmowmbB243
Cla97C05G081330Cucurbita moschata (Rifu)cmowmbB328
Cla97C05G081330Cucurbita moschata (Rifu)cmowmbB330
Cla97C05G081330Cucurbita moschata (Rifu)cmowmbB410
Cla97C05G081330Cucurbita moschata (Rifu)cmowmbB625
Cla97C05G081330Cucurbita moschata (Rifu)cmowmbB733
Cla97C05G081330Cucurbita moschata (Rifu)cmowmbB833
Cla97C05G081330Cucurbita moschata (Rifu)cmowmbB889
Cla97C05G081330Wild cucumber (PI 183967)cpiwmbB209
Cla97C05G081330Wild cucumber (PI 183967)cpiwmbB321
Cla97C05G081330Wild cucumber (PI 183967)cpiwmbB399
Cla97C05G081330Wild cucumber (PI 183967)cpiwmbB492
Cla97C05G081330Cucumber (Chinese Long) v3cucwmbB206
Cla97C05G081330Cucumber (Chinese Long) v3cucwmbB319
Cla97C05G081330Cucumber (Chinese Long) v3cucwmbB395
Cla97C05G081330Cucumber (Chinese Long) v2cuwmbB204
Cla97C05G081330Cucumber (Chinese Long) v2cuwmbB311
Cla97C05G081330Cucumber (Chinese Long) v2cuwmbB381
Cla97C05G081330Bottle gourd (USVL1VR-Ls)lsiwmbB023
Cla97C05G081330Bottle gourd (USVL1VR-Ls)lsiwmbB333
Cla97C05G081330Bottle gourd (USVL1VR-Ls)lsiwmbB339
Cla97C05G081330Melon (DHL92) v3.6.1medwmbB024
Cla97C05G081330Melon (DHL92) v3.6.1medwmbB117
Cla97C05G081330Melon (DHL92) v3.6.1medwmbB423
Cla97C05G081330Melon (DHL92) v3.6.1medwmbB476
Cla97C05G081330Melon (DHL92) v3.5.1mewmbB027
Cla97C05G081330Melon (DHL92) v3.5.1mewmbB126
Cla97C05G081330Melon (DHL92) v3.5.1mewmbB434
Cla97C05G081330Melon (DHL92) v3.5.1mewmbB437
Cla97C05G081330Melon (DHL92) v3.5.1mewmbB483
Cla97C05G081330Watermelon (Charleston Gray)wcgwmbB105
Cla97C05G081330Watermelon (Charleston Gray)wcgwmbB229
Cla97C05G081330Watermelon (Charleston Gray)wcgwmbB231
Cla97C05G081330Watermelon (Charleston Gray)wcgwmbB268
Cla97C05G081330Watermelon (97103) v1wmwmbB206
Cla97C05G081330Watermelon (97103) v1wmwmbB210
Cla97C05G081330Watermelon (97103) v1wmwmbB262
Cla97C05G081330Wax gourdwgowmbB082
Cla97C05G081330Wax gourdwgowmbB191
Cla97C05G081330Wax gourdwgowmbB196