Cla97C05G080740 (gene) Watermelon (97103) v2

NameCla97C05G080740
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionSNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein, putative isoform 1
LocationCla97Chr05 : 700192 .. 703428 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATATCACTGAAGAGCAGCGAAAGCGAGCCGAAGCAAACCGTTTAGCTGCCGCATCCAAACGCAAAGCACTGGTTGAAGCTTTTCAAATGTCGTAAGCTTTCCACTGAACTTAATACTGCGAGTTCCGTCCATTCATCGAAAAACTTATCCTACAACAACACTCATTTGCCTCAAAGGTTCCAAGTAAGGTTGGAAATTTTCTCCCCAGACTCGTTCTCGTTCACTGTCTTTGTTTTGCGCGTCTCGACGATAAGAAATCAGTGGAAAAACTCGATACCTTTTGGATTTTGTAGGCATTTTTCATTTAATTGTCTTCTGAACGGGAGAACTTGTGATTTGTAGTAGCCTTACTTTTTATTCCCTCTGCATTTGTCTAGCTCGCTCGGATATTTCTTTTGGTTTACTTGATTGCCTGGCTTATCCGGTTTCACCCAGTTCCACTGCGTACCTTAGAGAGTGATAGACGATATATTTAAAATTTTCAACAATTCTTTATTTTCGAAGTAAAATGGGCATAAATCACTATGCTGTACATCATTATGAGTGTGTAGTTCATTTAATCATTGTGTTGTATGGTACCTTCGCTGAAGATTGGCAAGCGGCACTATTCTGTCGCCAGAAAATTCATGTAATATGGACTAATATGCTTCATTAGAAAGAATCAAGAGAACCTTGAAGGGCGTAGAGGGGTCTTGGGGGAGATCTGAATTGTGGTCCACTTCCTTCCTTTGGGCGTTGCCTGTAGAAATTATTTGTACTTTCTCGTTGTTTTGATTTATAATAATTGGAGTCAATTTCTTGTAATTGCGTAGTTTTGTTGTAGCAGGTTCCTTTGCCTTGAAATTTTTATGTGTGTTGGTCCTCTTTTTTGTATCTTCATTTATCATATATCCTGGTTTTTTGTTTAAGAAAAAGGATTAATAAGTTTGCATAGGGAGATGTGTTGTAACCTCTTGTGTTTTTGCACGGATAAATGCTGTTCTTGATTTAGCAACCAAGGTTCAGCATATTATTCTTCTATCTGGAACTCCCTTATCAAGGTTGCATCGTGGCTTTCTCAAAGTGAATTCTTTAATGGTCTTTTGAGTATGATGTCTTTTCTCACTGAAGACATGTCTATCAAATTATATCTTTTATTTTCCATTTTAATTTCTATTCATTATAACATCTCACTTTAAATTTACCTAGGTGATCTTAGGCCATATGATATTTTTCATCAGATAGACATGGTATGGAAATTTCTCTTCAACCTTTACATCTTAGATCTGAATTGGATGACTTATTCTATTTCTAATGATCTATTATGTCAGAAGTTCATTTGCTCAATTCTGTATTTATTGTAGGCCTGGTTTGCTTGGAAAGACCAAGTACGAGTTTGCAGAGACTTGCGCTGTCAAATTTGTCTCGACTTCTTAGGGGAAAACTTTTAAGGTACTGGTTGGACTTGAAATTCTTGTTGAAGAGCATTCTATCTTCTTATTCTCAAAGTTTAGAATCTTAATGTGGTGTTGTCTACAAAATTTTGAATGAAGAGGGAAAGGAGGGTAAAAAAGAAAGAAGAAACTAAAATGGTTGTTTCTTTTTGGATAATACAAGAGGATCAACTATTTGGAATGCTGTTTTTGTTGAGAAAAAAATCAAAGGATCTCACACTGTTTATGAGATATATGAGCTTCACCTCCCATTGCCAATTGGTTTTGAGATGGAATCCCAACGTTATCTAATAGTTTTATATTTCAACCTTATTTTGGCTTTTATTTAAGATTAATATTTACATTTAATATTGGACCTGTCGCCTACAGACTTGAGCTGCCACTTGACGTTAAGATACATGATGTCTTTCATATTGCGGCATTGCCCCAGCTGGTAGCCCCCTGGTTTTTGACCCCTTCCTTCTCTGCTCCTTTGAAACCAATGGCACTGTTGGGTTGGGTCTAAGACAAATAAAGTTTTCCACAAATAGGAAAGATGAGCTTGAAGTGTTGATACAGTGGGAAGGTGTTGGACTGGAAGATGCCACTTGGGAGTCCAGACAAATTCTGACTGAGCAATTTCCTGAGTTCCACCTTGAAGACAAAGTGGCTTGTTGGGGGGTGGGTAATGATAGACCCTCGATCAAGAAGGTGTAATATTTGAAAGAAAAATAGAGGAAAGGGAGGGGGAAATAGACAAAGCAATGTAATCAATAATAAATAAGAAGTAATTACATGAGAGTGGGAATGATGTGATTGTGTGGGGTCCATGGGATAATTCGGTTAGTTGAGATTTTTCCTTTTTAAGAGAGGTAGGGAGGCAGGCATTGATTATCTTTTTGACATTTTAGTGAATGTGTAGCTCTTTGAGCAAATTGAGAGAGGGGAAGGTCTCAAGCTTCCTTGGCGTTTAGCCTAAATAGTGAATATATAAGCTTGGGGCTCTGTCATATTTATGCTTCATTTTAAGGTACAAAGTTTAAATTTAGATAGAATTTCTGCTGCAGAACTTCTCAAAAGGCATTCGATTAGATGAGTTGAATGTGCTGCTCAAGCAAACTGTTATGGTGTGCGTTCATTCTCTCTATTACTTATGTTTGAGTAGACTGGACAATGCTGTTGTTGAAAAGTTCTGATGTTGCTGAAAACAAATACTCACAATATTTTGGGGGAAGAGTACTGATGTTATGAGTGTGTATTTTATCTGTTATTTGTGGTCTTTTTGTTACATGTGATATCTTTTGGCGTACTACTTTGCTGTATGAGTCTATGACAACAAGACAATTTAATGTTTTTAACTATTCTATTTTTAGATTCTTGTGTGTACTTGATCGCATTTGTTTTAATTTCCCAGTATCTCATCCATTGTTGGAATTTCTACTATTTAGTATTTATAAATATTCATGTATACATATTAGTTGTCAATATTTGGTCTTTGTTTTCGTTATTCTTTCCTTATTTGTAATAAGTCTTCTAAGTTGCATAGTTTAAGATATAGCACAATATATATTTTTTTATCCTTTGTAAATTTGGAATTACATTCTCATCTACCTAATGGACATCAATTTGGTTGTTGTTCTTATATTATTATTATTATTATTATTACTACTACTATTATTATTTGAGAGTCGTTTTGAGTTCGGTGTTTCTTGAATGTCTATTATTTTGTTGGTGTTTTGAAAGGAAGATATGGAAGTGATGAGAGACTCTGTGAAAGAGCACCATTTCAGCTACTTTTTGGACTTCACATCTCTTTTTTGA

mRNA sequence

ATGGATATCACTGAAGAGCAGCGAAAGCGAGCCGAAGCAAACCGTTTAGCTGCCGCATCCAAACGCAAAGCACTGGTTGAAGCTTTTCAAATGTCGCCTGGTTTGCTTGGAAAGACCAAGTACGAGTTTGCAGAGACTTGCGCTGAAGATATGGAAGTGATGAGAGACTCTGTGAAAGAGCACCATTTCAGCTACTTTTTGGACTTCACATCTCTTTTTTGA

Coding sequence (CDS)

ATGGATATCACTGAAGAGCAGCGAAAGCGAGCCGAAGCAAACCGTTTAGCTGCCGCATCCAAACGCAAAGCACTGGTTGAAGCTTTTCAAATGTCGCCTGGTTTGCTTGGAAAGACCAAGTACGAGTTTGCAGAGACTTGCGCTGAAGATATGGAAGTGATGAGAGACTCTGTGAAAGAGCACCATTTCAGCTACTTTTTGGACTTCACATCTCTTTTTTGA

Protein sequence

MDITEEQRKRAEANRLAAASKRKALVEAFQMSPGLLGKTKYEFAETCAEDMEVMRDSVKEHHFSYFLDFTSLF
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
molecular_function GO:0005524 ATP binding
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0004386 helicase activity
molecular_function GO:0003676 nucleic acid binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G080740.1Cla97C05G080740.1mRNA


Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 3..23

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C05G080740Watermelon (97103) v2wmbwmbB016
Cla97C05G080740Silver-seed gourdcarwmbB0130
Cla97C05G080740Silver-seed gourdcarwmbB1047
Cla97C05G080740Cucumber (Gy14) v2cgybwmbB196
Cla97C05G080740Cucumber (Gy14) v2cgybwmbB364
Cla97C05G080740Cucumber (Gy14) v1cgywmbB381
Cla97C05G080740Cucumber (Gy14) v1cgywmbB452
Cla97C05G080740Cucurbita maxima (Rimu)cmawmbB012
Cla97C05G080740Cucurbita maxima (Rimu)cmawmbB263
Cla97C05G080740Cucurbita maxima (Rimu)cmawmbB859
Cla97C05G080740Cucurbita maxima (Rimu)cmawmbB862
Cla97C05G080740Cucurbita moschata (Rifu)cmowmbB243
Cla97C05G080740Cucurbita moschata (Rifu)cmowmbB625
Cla97C05G080740Cucurbita moschata (Rifu)cmowmbB833
Cla97C05G080740Wild cucumber (PI 183967)cpiwmbB209
Cla97C05G080740Wild cucumber (PI 183967)cpiwmbB399
Cla97C05G080740Cucumber (Chinese Long) v3cucwmbB206
Cla97C05G080740Cucumber (Chinese Long) v3cucwmbB395
Cla97C05G080740Cucumber (Chinese Long) v2cuwmbB204
Cla97C05G080740Cucumber (Chinese Long) v2cuwmbB381
Cla97C05G080740Bottle gourd (USVL1VR-Ls)lsiwmbB333
Cla97C05G080740Melon (DHL92) v3.6.1medwmbB024
Cla97C05G080740Melon (DHL92) v3.6.1medwmbB423
Cla97C05G080740Melon (DHL92) v3.5.1mewmbB027
Cla97C05G080740Melon (DHL92) v3.5.1mewmbB434
Cla97C05G080740Watermelon (Charleston Gray)wcgwmbB105
Cla97C05G080740Watermelon (Charleston Gray)wcgwmbB229
Cla97C05G080740Watermelon (97103) v1wmwmbB206
Cla97C05G080740Watermelon (97103) v1wmwmbB262
Cla97C05G080740Wax gourdwgowmbB082
Cla97C05G080740Wax gourdwgowmbB191