Cla97C04G074480 (gene) Watermelon (97103) v2

Overview
NameCla97C04G074480
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr04 : 22161046 .. 22161444 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCAACCAGCATTCATCATCTTACCCATTGTCTCGGTTTCCATCTTTATTACTATATGTGTGCTGAATATTATTTGCCGGAGCAGAGTTTATAATGGCAAGACTGACAGCGCCTTCTCCGGACGCACTTACAATGGGGGCCAAATTGACGTAGTTATTGATCATGGGAACAATACCGATACAAGCGCCTTTGCCGGAGATGGAGCTGTACATACTGGTGGTGATTGGGGTTTTAATGGCAACAGTGGATGGGGCTATGATGCTGGAGGTGGTGGCGGTGGCTTCGGTGGGGGAGGAGGATATGATGGTGGAGGTGGTGGTGGCTTCGGTGGAGGAGGGGGATGTGACACCGGAGGTGGTGGCGGTGGCGGAGGTGGAGGTTCAACTAGCTATTGA

mRNA sequence

ATGGTTCAACCAGCATTCATCATCTTACCCATTGTCTCGGTTTCCATCTTTATTACTATATGTGTGCTGAATATTATTTGCCGGAGCAGAGTTTATAATGGCAAGACTGACAGCGCCTTCTCCGGACGCACTTACAATGGGGGCCAAATTGACGTAGTTATTGATCATGGGAACAATACCGATACAAGCGCCTTTGCCGGAGATGGAGCTGTACATACTGGTGGTGATTGGGGTTTTAATGGCAACAGTGGATGGGGCTATGATGCTGGAGGTGGTGGCGGTGGCTTCGGTGGGGGAGGAGGATATGATGGTGGAGGTGGTGGTGGCTTCGGTGGAGGAGGGGGATGTGACACCGGAGGTGGTGGCGGTGGCGGAGGTGGAGGTTCAACTAGCTATTGA

Coding sequence (CDS)

ATGGTTCAACCAGCATTCATCATCTTACCCATTGTCTCGGTTTCCATCTTTATTACTATATGTGTGCTGAATATTATTTGCCGGAGCAGAGTTTATAATGGCAAGACTGACAGCGCCTTCTCCGGACGCACTTACAATGGGGGCCAAATTGACGTAGTTATTGATCATGGGAACAATACCGATACAAGCGCCTTTGCCGGAGATGGAGCTGTACATACTGGTGGTGATTGGGGTTTTAATGGCAACAGTGGATGGGGCTATGATGCTGGAGGTGGTGGCGGTGGCTTCGGTGGGGGAGGAGGATATGATGGTGGAGGTGGTGGTGGCTTCGGTGGAGGAGGGGGATGTGACACCGGAGGTGGTGGCGGTGGCGGAGGTGGAGGTTCAACTAGCTATTGA

Protein sequence

MVQPAFIILPIVSVSIFITICVLNIICRSRVYNGKTDSAFSGRTYNGGQIDVVIDHGNNTDTSAFAGDGAVHTGGDWGFNGNSGWGYDAGGGGGGFGGGGGYDGGGGGGFGGGGGCDTGGGGGGGGGGSTSY
Homology
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BLAST of Cla97C04G074480 vs. NCBI nr
Match: XP_022931866.1 (glycine-rich protein 5-like [Cucurbita moschata])

HSP 1 Score: 54.7 bits (130), Expect = 2.8e-04
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 0 

Query: 6  FIILPIVSVSIFITICVLNIICRSRVYNGKTDSAFSGRTYNGGQIDVVID 56
          FIILP+V VS++ITICVL+IICRSRV NGK      G  Y+G Q+++ ID
Sbjct: 7  FIILPVVFVSLWITICVLSIICRSRVSNGKVSGGGVG-AYDGNQVNIDID 55

The following BLAST results are available for this feature:
BLAST of Cla97C04G074480 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022931866.12.8e-0460.00glycine-rich protein 5-like [Cucurbita moschata][more]
BLAST of Cla97C04G074480 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Cla97C04G074480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C04G074480 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C04G074480.1Cla97C04G074480.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C04G074480Cla018177Watermelon (97103) v1wmwmbB291
Cla97C04G074480ClCG04G007790Watermelon (Charleston Gray)wcgwmbB200
Cla97C04G074480CmaCh07G010160Cucurbita maxima (Rimu)cmawmbB897
Cla97C04G074480Bhi03G001602Wax gourdwgowmbB431
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C04G074480Watermelon (97103) v2wmbwmbB052
Cla97C04G074480Watermelon (97103) v2wmbwmbB126
Cla97C04G074480Silver-seed gourdcarwmbB0090
Cla97C04G074480Silver-seed gourdcarwmbB0583
Cla97C04G074480Silver-seed gourdcarwmbB0609
Cla97C04G074480Silver-seed gourdcarwmbB0695
Cla97C04G074480Silver-seed gourdcarwmbB1054
Cla97C04G074480Cucumber (Gy14) v2cgybwmbB195
Cla97C04G074480Cucumber (Gy14) v2cgybwmbB282
Cla97C04G074480Cucurbita moschata (Rifu)cmowmbB239
Cla97C04G074480Cucumber (Gy14) v1cgywmbB062
Cla97C04G074480Cucumber (Gy14) v1cgywmbB294
Cla97C04G074480Cucumber (Gy14) v1cgywmbB321
Cla97C04G074480Cucurbita maxima (Rimu)cmawmbB259
Cla97C04G074480Cucurbita maxima (Rimu)cmawmbB684
Cla97C04G074480Cucurbita maxima (Rimu)cmawmbB751
Cla97C04G074480Cucurbita maxima (Rimu)cmawmbB754
Cla97C04G074480Cucurbita maxima (Rimu)cmawmbB855
Cla97C04G074480Cucurbita moschata (Rifu)cmowmbB657
Cla97C04G074480Cucurbita moschata (Rifu)cmowmbB722
Cla97C04G074480Cucurbita moschata (Rifu)cmowmbB725
Cla97C04G074480Cucurbita moschata (Rifu)cmowmbB867
Cla97C04G074480Cucurbita moschata (Rifu)cmowmbB831
Cla97C04G074480Wild cucumber (PI 183967)cpiwmbB207
Cla97C04G074480Wild cucumber (PI 183967)cpiwmbB307
Cla97C04G074480Wild cucumber (PI 183967)cpiwmbB394
Cla97C04G074480Cucumber (Chinese Long) v3cucwmbB205
Cla97C04G074480Cucumber (Chinese Long) v3cucwmbB307
Cla97C04G074480Cucumber (Chinese Long) v3cucwmbB390
Cla97C04G074480Cucumber (Chinese Long) v2cuwmbB202
Cla97C04G074480Cucumber (Chinese Long) v2cuwmbB298
Cla97C04G074480Cucumber (Chinese Long) v2cuwmbB376
Cla97C04G074480Bottle gourd (USVL1VR-Ls)lsiwmbB140
Cla97C04G074480Bottle gourd (USVL1VR-Ls)lsiwmbB235
Cla97C04G074480Melon (DHL92) v3.6.1medwmbB318
Cla97C04G074480Melon (DHL92) v3.6.1medwmbB532
Cla97C04G074480Melon (DHL92) v3.5.1mewmbB059
Cla97C04G074480Melon (DHL92) v3.5.1mewmbB330
Cla97C04G074480Melon (DHL92) v3.5.1mewmbB538
Cla97C04G074480Watermelon (Charleston Gray)wcgwmbB047
Cla97C04G074480Watermelon (Charleston Gray)wcgwmbB303
Cla97C04G074480Watermelon (97103) v1wmwmbB066
Cla97C04G074480Watermelon (97103) v1wmwmbB160