Cla97C04G072410 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C04G072410
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23330
Location	Cla97Chr04 : 19522421 .. 19522812 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCCCTCTGCTTGTGCCCAATGCCCAACAGTTACCCAGAAACGCCGGTTGTGCTCGATGCCTGACGCTAGACGTTGCCCTTCCTGCTTGTGCCAACGTCGCCTTCTACTTGTGCCAACGCCCTCTGCTTCTTTTCTCCTCCTTCTGCTCCTTCTTTCTCTCTTTGCCTCCCTTCAGGTATTCATCTAACATTTCTCTCCCTTTTCTTTCTTCTTTATAGCATTCTTATGTGGGGATTTGATTTGTATTCTTTGTTCGATGTTTGTAAGGTGTATTCTGCGGAAGTGGAGAAAGATGAGTTGGATGGACCTAAAGATCTTGGTCGACGTAGCAAGGTGAGTACGATTCATTATCTTTCTCGTTATGCTTTGTATAAAGTGGTTTTATAG

mRNA sequence

ATGCCGCCCTCTGCTTGTGCCCAATGCCCAACAGTTACCCAGAAACGCCGGTTGTGCTCGATGCCTGACGCTAGACGTTGCCCTTCCTGCTTGTGCCAACGTCGCCTTCTACTTGTGCCAACGCCCTCTGCTTCTTTTCTCCTCCTTCTGCTCCTTCTTTCTCTCTTTGCCTCCCTTCAGGTGTATTCTGCGGAAGTGGAGAAAGATGAGTTGGATGGACCTAAAGATCTTGGTCGACGTAGCAAGGTGAGTACGATTCATTATCTTTCTCGTTATGCTTTGTATAAAGTGGTTTTATAG

Coding sequence (CDS)

ATGCCGCCCTCTGCTTGTGCCCAATGCCCAACAGTTACCCAGAAACGCCGGTTGTGCTCGATGCCTGACGCTAGACGTTGCCCTTCCTGCTTGTGCCAACGTCGCCTTCTACTTGTGCCAACGCCCTCTGCTTCTTTTCTCCTCCTTCTGCTCCTTCTTTCTCTCTTTGCCTCCCTTCAGGTGTATTCTGCGGAAGTGGAGAAAGATGAGTTGGATGGACCTAAAGATCTTGGTCGACGTAGCAAGGTGAGTACGATTCATTATCTTTCTCGTTATGCTTTGTATAAAGTGGTTTTATAG

Protein sequence

MPPSACAQCPTVTQKRRLCSMPDARRCPSCLCQRRLLLVPTPSASFLLLLLLLSLFASLQVYSAEVEKDELDGPKDLGRRSKVSTIHYLSRYALYKVVL

Homology

[Close]

BLAST of Cla97C04G072410 vs. NCBI nr
Match: XP_008441858.1 (PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23330 [Cucumis melo])

HSP 1 Score: 61.2 bits (147), Expect = 2.2e-06
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 54 SLFASLQVYSAEVEKDELDGPKDLGRRSKVS 85
          SLFAS+QVYSAE EKDELDGPKDLGRRSK+S
Sbjct: 25 SLFASIQVYSAEAEKDELDGPKDLGRRSKIS 55

[Close]

BLAST of Cla97C04G072410 vs. NCBI nr
Match: XP_022997610.1 (putative pentatricopeptide repeat-containing protein At3g23330 [Cucurbita maxima])

HSP 1 Score: 60.8 bits (146), Expect = 2.9e-06
Identity = 28/31 (90.32%), Postives = 31/31 (100.00%), Query Frame = 0


Query: 54 SLFASLQVYSAEVEKDELDGPKDLGRRSKVS 85
          SLFAS+QVYSAEVEK+ELDGPKDLGRRSK+S
Sbjct: 25 SLFASVQVYSAEVEKEELDGPKDLGRRSKIS 55

[Close]

BLAST of Cla97C04G072410 vs. NCBI nr
Match: XP_023545881.1 (putative pentatricopeptide repeat-containing protein At3g23330 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 59.3 bits (142), Expect = 8.5e-06
Identity = 27/31 (87.10%), Postives = 31/31 (100.00%), Query Frame = 0


Query: 54 SLFASLQVYSAEVEKDELDGPKDLGRRSKVS 85
          SLFAS+QV+SAEVEK+ELDGPKDLGRRSK+S
Sbjct: 25 SLFASVQVFSAEVEKEELDGPKDLGRRSKIS 55

[Close]

BLAST of Cla97C04G072410 vs. NCBI nr
Match: KGN61261.1 (hypothetical protein Csa_2G074220 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-05
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 54 SLFASLQVYSAEVEKDELDGPKDLGRRSKVS 85
          SLFAS QVYSAEVEKD+LDGPKDLGRRSK+S
Sbjct: 25 SLFASHQVYSAEVEKDDLDGPKDLGRRSKMS 55

[Close]

BLAST of Cla97C04G072410 vs. NCBI nr
Match: XP_011648996.1 (PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23330 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-05
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 54 SLFASLQVYSAEVEKDELDGPKDLGRRSKVS 85
          SLFAS QVYSAEVEKD+LDGPKDLGRRSK+S
Sbjct: 25 SLFASHQVYSAEVEKDDLDGPKDLGRRSKMS 55

[Close]

BLAST of Cla97C04G072410 vs. TrEMBL
Match: tr|A0A1S3B4E3|A0A1S3B4E3_CUCME (LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23330 OS=Cucumis melo OX=3656 GN=LOC103485889 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-06
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 54 SLFASLQVYSAEVEKDELDGPKDLGRRSKVS 85
          SLFAS+QVYSAE EKDELDGPKDLGRRSK+S
Sbjct: 25 SLFASIQVYSAEAEKDELDGPKDLGRRSKIS 55

[Close]

BLAST of Cla97C04G072410 vs. TrEMBL
Match: tr|A0A0A0LMQ4|A0A0A0LMQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G074220 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.3e-06
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 54 SLFASLQVYSAEVEKDELDGPKDLGRRSKVS 85
          SLFAS QVYSAEVEKD+LDGPKDLGRRSK+S
Sbjct: 25 SLFASHQVYSAEVEKDDLDGPKDLGRRSKMS 55

[Close]

BLAST of Cla97C04G072410 vs. TrEMBL
Match: tr|A0A0A0K4H3|A0A0A0K4H3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336440 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-05
Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 55  LFASLQVYSAEVEKDELDGPKDLGRRSKVSTIHYLSR--YALYKVVL 100
           LFAS+QVYSAEVEKD+LDGPKDLGR SK S ++ ++R  Y L +  L
Sbjct: 24  LFASVQVYSAEVEKDDLDGPKDLGRCSKFSFLYIVNRTNYCLLRYTL 70

The following BLAST results are available for this feature:

BLAST of Cla97C04G072410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441858.1	2.2e-06	90.32	PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing pro...	[more]
XP_022997610.1	2.9e-06	90.32	putative pentatricopeptide repeat-containing protein At3g23330 [Cucurbita maxima...	[more]
XP_023545881.1	8.5e-06	87.10	putative pentatricopeptide repeat-containing protein At3g23330 [Cucurbita pepo s...	[more]
KGN61261.1	1.1e-05	90.32	hypothetical protein Csa_2G074220 [Cucumis sativus]	[more]
XP_011648996.1	1.1e-05	90.32	PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing pro...	[more]

BLAST of Cla97C04G072410 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B4E3\|A0A1S3B4E3_CUCME	1.5e-06	90.32	LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23...	[more]
tr\|A0A0A0LMQ4\|A0A0A0LMQ4_CUCSA	7.3e-06	90.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G074220 PE=4 SV=1	[more]
tr\|A0A0A0K4H3\|A0A0A0K4H3_CUCSA	1.3e-05	63.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336440 PE=4 SV=1	[more]

BLAST of Cla97C04G072410 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C04G072410 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C04G072410.1	Cla97C04G072410.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C04G072410	Cla012085	Watermelon (97103) v1	wmwmbB291
Cla97C04G072410	ClCG04G005850	Watermelon (Charleston Gray)	wcgwmbB200

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C04G072410	Silver-seed gourd	carwmbB0606
Cla97C04G072410	Cucumber (Gy14) v2	cgybwmbB285
Cla97C04G072410	Cucumber (Gy14) v1	cgywmbB613
Cla97C04G072410	Cucurbita maxima (Rimu)	cmawmbB686
Cla97C04G072410	Cucurbita maxima (Rimu)	cmawmbB892
Cla97C04G072410	Cucurbita moschata (Rifu)	cmowmbB862
Cla97C04G072410	Wild cucumber (PI 183967)	cpiwmbB310
Cla97C04G072410	Cucumber (Chinese Long) v3	cucwmbB310
Cla97C04G072410	Cucumber (Chinese Long) v2	cuwmbB300
Cla97C04G072410	Bottle gourd (USVL1VR-Ls)	lsiwmbB141
Cla97C04G072410	Melon (DHL92) v3.6.1	medwmbB527
Cla97C04G072410	Melon (DHL92) v3.5.1	mewmbB535
Cla97C04G072410	Wax gourd	wgowmbB425