Cla97C03G064860 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C03G064860
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	SH3 domain-binding protein 1, putative
Location	Cla97Chr03 : 28330399 .. 28330767 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCTGCAGCAAATCGTAAGAAACAATTATGCAAGTACTTAAAGCCCGGCGCGTTGGCGCAAATGCGAGACTCACGAATCAGAGCCAAAAGGAACAGAGACAAATCGGTGGATCAAATATACCTCTGCCGTACTTCTGCTCTGGAATCGTCTCCGGTTTCCGGTACCGCTGCTCAATCGGAGATTAAGATCGTCGAGGATTTCCGTGTCGGTGCTCCGTTGTGCCTTAATAGGAAGAAGATCACCGCGATTAAGCCGACCACTTGGTTTCCGAACCCTGATTTGGAGATTCCAACTTCCGATTTAACTCGAGACCGCCCGGTTATTGATGCGCTTAGTAGCGATGTTGCTGCCCCTCAAGTTTGA

mRNA sequence

ATGGAACCTGCAGCAAATCGTAAGAAACAATTATGCAAGTACTTAAAGCCCGGCGCGTTGGCGCAAATGCGAGACTCACGAATCAGAGCCAAAAGGAACAGAGACAAATCGGTGGATCAAATATACCTCTGCCGTACTTCTGCTCTGGAATCGTCTCCGGTTTCCGGTACCGCTGCTCAATCGGAGATTAAGATCGTCGAGGATTTCCGTGTCGGTGCTCCGTTGTGCCTTAATAGGAAGAAGATCACCGCGATTAAGCCGACCACTTGGTTTCCGAACCCTGATTTGGAGATTCCAACTTCCGATTTAACTCGAGACCGCCCGGTTATTGATGCGCTTAGTAGCGATGTTGCTGCCCCTCAAGTTTGA

Coding sequence (CDS)

ATGGAACCTGCAGCAAATCGTAAGAAACAATTATGCAAGTACTTAAAGCCCGGCGCGTTGGCGCAAATGCGAGACTCACGAATCAGAGCCAAAAGGAACAGAGACAAATCGGTGGATCAAATATACCTCTGCCGTACTTCTGCTCTGGAATCGTCTCCGGTTTCCGGTACCGCTGCTCAATCGGAGATTAAGATCGTCGAGGATTTCCGTGTCGGTGCTCCGTTGTGCCTTAATAGGAAGAAGATCACCGCGATTAAGCCGACCACTTGGTTTCCGAACCCTGATTTGGAGATTCCAACTTCCGATTTAACTCGAGACCGCCCGGTTATTGATGCGCTTAGTAGCGATGTTGCTGCCCCTCAAGTTTGA

Protein sequence

MEPAANRKKQLCKYLKPGALAQMRDSRIRAKRNRDKSVDQIYLCRTSALESSPVSGTAAQSEIKIVEDFRVGAPLCLNRKKITAIKPTTWFPNPDLEIPTSDLTRDRPVIDALSSDVAAPQV

Homology

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BLAST of Cla97C03G064860 vs. NCBI nr
Match: XP_023513131.1 (uncharacterized protein LOC111777660 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 119.4 bits (298), Expect = 8.5e-24
Identity = 72/120 (60.00%), Postives = 88/120 (73.33%), Query Frame = 0


Query: 5   ANRKKQLCKYLKPGALAQMRDSRIRAKRNRDKSVDQIYLCRTSALESSPVSGTAAQSEIK 64
           ANR +Q  KYLKPGALA+MRDSRI A+  R  S+ QIYL RT++LESSP+S    QSEI 
Sbjct: 13  ANRTEQFHKYLKPGALAKMRDSRISARSYRYNSLSQIYLRRTASLESSPLS-AIGQSEID 72

Query: 65  IVEDF-----RVGAPLCLNRKKITAIKPTTWFPNPDLEIPTSDLTRDRPVIDALSSDVAA 120
            V+DF     RV  PLCL RKK   IK +TWFP+P+L+ PT+DLT + P+IDA +SDVAA
Sbjct: 73  -VDDFPSLAGRVYGPLCLKRKKFAGIK-STWFPSPNLQTPTTDLTGE-PIIDAFNSDVAA 128

[Close]

BLAST of Cla97C03G064860 vs. NCBI nr
Match: XP_022986202.1 (uncharacterized protein LOC111484017 [Cucurbita maxima])

HSP 1 Score: 117.1 bits (292), Expect = 4.2e-23
Identity = 70/120 (58.33%), Postives = 88/120 (73.33%), Query Frame = 0


Query: 5   ANRKKQLCKYLKPGALAQMRDSRIRAKRNRDKSVDQIYLCRTSALESSPVSGTAAQSEIK 64
           ANR +Q  K+LKPGALA+MRDSRI A+  R  S+ QI+L RT++LESSP+S    QSEI 
Sbjct: 13  ANRTEQFHKFLKPGALAKMRDSRISARSYRYNSLSQIHLRRTASLESSPLS-AIGQSEID 72

Query: 65  IVEDF-----RVGAPLCLNRKKITAIKPTTWFPNPDLEIPTSDLTRDRPVIDALSSDVAA 120
            V+DF     RV  PLCL RKK+  IK TTWFP+P+L+ PT+DLT D  ++DA +SDVAA
Sbjct: 73  -VDDFPSLSGRVYGPLCLKRKKLAGIK-TTWFPSPNLQTPTTDLTGDH-IVDAFNSDVAA 128

[Close]

BLAST of Cla97C03G064860 vs. NCBI nr
Match: XP_022944248.1 (uncharacterized protein LOC111448755 [Cucurbita moschata])

HSP 1 Score: 112.5 bits (280), Expect = 1.0e-21
Identity = 69/120 (57.50%), Postives = 88/120 (73.33%), Query Frame = 0


Query: 5   ANRKKQLCKYLKPGALAQMRDSRIRAKRNRDKSVDQIYLCRTSALESSPVSGTAAQSEIK 64
           ANR +Q  KYLKPGALA++RDSRI A+  R  S+ QIYL RT++ ESSP+S +  QSEI 
Sbjct: 13  ANRTEQFHKYLKPGALAKIRDSRISARLYRYNSLSQIYLRRTASPESSPLS-SIGQSEID 72

Query: 65  IVEDF-----RVGAPLCLNRKKITAIKPTTWFPNPDLEIPTSDLTRDRPVIDALSSDVAA 120
            V+DF     RV  PLCL RKK + IK +TWFP+P+L+ PT+DL+ D  +IDA +SDVAA
Sbjct: 73  -VDDFPSLSGRVYGPLCLKRKKFSGIK-STWFPSPNLQTPTADLSGD-SIIDAFNSDVAA 128

[Close]

BLAST of Cla97C03G064860 vs. NCBI nr
Match: KGN66369.1 (hypothetical protein Csa_1G600090 [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 2.8e-14
Identity = 52/115 (45.22%), Postives = 70/115 (60.87%), Query Frame = 0


Query: 1   MEPAANRKKQLCKYLKPGALAQMRDSRIRAKRNRDKSVDQIYLCRTSALESSPVSGTAAQ 60
           M+  +N KKQ  KY KPG LAQ+RDS+I AKRNR KS+ +I  C    +ES  +   + Q
Sbjct: 1   MKSESNDKKQSRKYFKPGELAQIRDSQINAKRNRVKSISKI--CLHPIVESPSIFDISNQ 60

Query: 61  SEIKIVEDFRVGAPLCLNRKKITAIKPTTWFPNPDLEIPTSDLTRDRPVIDALSS 116
            E ++ +    GA    NRKKI AIKP   F NP+LE P  +LT D+ +I ++ S
Sbjct: 61  LEFRMAKVCPNGASFFPNRKKIAAIKPDNLFSNPNLESPIIELTSDQLIIGSVDS 113

[Close]

BLAST of Cla97C03G064860 vs. NCBI nr
Match: KGN66347.1 (hypothetical protein Csa_1G599410 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 7.0e-10
Identity = 44/105 (41.90%), Postives = 58/105 (55.24%), Query Frame = 0


Query: 1   MEPAANRKKQLCKYLKPGALAQMRDSRIRAKRNRDKSVDQIYLCRTSALESSPVSGTAAQ 60
           M+   N KKQ  KY K   LA +RDS+I  KRN               +ES P+   + Q
Sbjct: 1   MKGEPNGKKQSRKYFKSNELAHIRDSQINVKRNH------------PIMESPPIFDISDQ 60

Query: 61  SEIKIVEDFRVGAPLCLNRKKITAIKPTTWFPNPDLEIPTSDLTR 106
            E ++V+ +R GA   LN+KKI AIKP   F NP+LE P ++LTR
Sbjct: 61  LEFRMVKVYRNGASFFLNKKKIVAIKPVNLFLNPNLESPITELTR 93

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BLAST of Cla97C03G064860 vs. TrEMBL
Match: tr|A0A0A0LZ95|A0A0A0LZ95_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G600090 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.8e-14
Identity = 52/115 (45.22%), Postives = 70/115 (60.87%), Query Frame = 0


Query: 1   MEPAANRKKQLCKYLKPGALAQMRDSRIRAKRNRDKSVDQIYLCRTSALESSPVSGTAAQ 60
           M+  +N KKQ  KY KPG LAQ+RDS+I AKRNR KS+ +I  C    +ES  +   + Q
Sbjct: 1   MKSESNDKKQSRKYFKPGELAQIRDSQINAKRNRVKSISKI--CLHPIVESPSIFDISNQ 60

Query: 61  SEIKIVEDFRVGAPLCLNRKKITAIKPTTWFPNPDLEIPTSDLTRDRPVIDALSS 116
            E ++ +    GA    NRKKI AIKP   F NP+LE P  +LT D+ +I ++ S
Sbjct: 61  LEFRMAKVCPNGASFFPNRKKIAAIKPDNLFSNPNLESPIIELTSDQLIIGSVDS 113

[Close]

BLAST of Cla97C03G064860 vs. TrEMBL
Match: tr|A0A0A0LZP6|A0A0A0LZP6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G599410 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.6e-10
Identity = 44/105 (41.90%), Postives = 58/105 (55.24%), Query Frame = 0


Query: 1   MEPAANRKKQLCKYLKPGALAQMRDSRIRAKRNRDKSVDQIYLCRTSALESSPVSGTAAQ 60
           M+   N KKQ  KY K   LA +RDS+I  KRN               +ES P+   + Q
Sbjct: 1   MKGEPNGKKQSRKYFKSNELAHIRDSQINVKRNH------------PIMESPPIFDISDQ 60

Query: 61  SEIKIVEDFRVGAPLCLNRKKITAIKPTTWFPNPDLEIPTSDLTR 106
            E ++V+ +R GA   LN+KKI AIKP   F NP+LE P ++LTR
Sbjct: 61  LEFRMVKVYRNGASFFLNKKKIVAIKPVNLFLNPNLESPITELTR 93

[Close]

BLAST of Cla97C03G064860 vs. TrEMBL
Match: tr|A0A2P5EE91|A0A2P5EE91_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_203870 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.7e-08
Identity = 47/119 (39.50%), Postives = 64/119 (53.78%), Query Frame = 0


Query: 6   NRKKQLCKYLKPGALAQMRDSRIRAKRNRDKSVDQIYLCRTSALESSPVSGTAAQSEIKI 65
           +R +   KYLKPGALAQ+RDSRI A+ +R  S+ QI     S+  SSP   T  Q  +  
Sbjct: 14  SRTEPFLKYLKPGALAQIRDSRISARSHRVVSLAQI----RSSQPSSPPPSTPGQLSVAA 73

Query: 66  VEDF-----RVGAPLCLNRKKITAIKPTTWFPNPDLEIPTSDLTRDRPVIDALSSDVAA 120
           ++ F     RV  P C  RKK+ A K    FP+ +   P  D     P++D  S+D+AA
Sbjct: 74  MDGFPCFSGRVFGPRCPQRKKLVASK-AVLFPSQNPSSPVLDAA--DPIMDVFSTDIAA 125

[Close]

BLAST of Cla97C03G064860 vs. TrEMBL
Match: tr|A0A2P5D5Y9|A0A2P5D5Y9_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_093300 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.7e-08
Identity = 47/119 (39.50%), Postives = 65/119 (54.62%), Query Frame = 0


Query: 6   NRKKQLCKYLKPGALAQMRDSRIRAKRNRDKSVDQIYLCRTSALESSPVSGTAAQSEIKI 65
           +R +   KYLKPGALAQ+RDSRI AK +R  S+ QI   R+S   S P S T +Q  +  
Sbjct: 14  SRTEPFLKYLKPGALAQIRDSRISAKSHRVVSLAQI---RSSQPSSPPPSSTPSQLSVAA 73

Query: 66  VEDF-----RVGAPLCLNRKKITAIKPTTWFPNPDLEIPTSDLTRDRPVIDALSSDVAA 120
           ++ F     R+  P C  RKK+ A K    F + +   P  D     P++D  S+D+AA
Sbjct: 74  MDGFPCFSGRIFGPRCPQRKKLVASK-AVLFTSQNPSSPVLDAA--DPIMDVFSTDIAA 126

[Close]

BLAST of Cla97C03G064860 vs. TrEMBL
Match: tr|A0A1U8B596|A0A1U8B596_NELNU (uncharacterized protein LOC104610941 OS=Nelumbo nucifera OX=4432 GN=LOC104610941 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.8e-07
Identity = 47/120 (39.17%), Postives = 70/120 (58.33%), Query Frame = 0


Query: 4   AANRKKQLCKYLKPGALAQMRDSRIRAKRNRDKSVDQIYLCR-TSALESSPVSGTAAQSE 63
           AA   +   +YLKPGALAQ+RDSRI A+  R     QI   R TS+L SS  +G++ Q++
Sbjct: 12  AAKGDEGFYRYLKPGALAQIRDSRISARCQRLDLQAQISTYRFTSSLSSSVSTGSSIQAQ 71

Query: 64  IKIVEDF-----RVGAPLCLNRKKITAIKPTTWFPNPDLEIPTSDLTRDRPVIDALSSDV 118
           I  ++ F     R+ +P C  RKK+ A K + +F + +   P SD     P++D LS+D+
Sbjct: 72  IATIDGFPCFGRRIHSPRCPQRKKLVAAK-SIFFLSSNPSSPVSDSL--DPLMDVLSTDL 128

The following BLAST results are available for this feature:

BLAST of Cla97C03G064860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023513131.1	8.5e-24	60.00	uncharacterized protein LOC111777660 [Cucurbita pepo subsp. pepo]	[more]
XP_022986202.1	4.2e-23	58.33	uncharacterized protein LOC111484017 [Cucurbita maxima]	[more]
XP_022944248.1	1.0e-21	57.50	uncharacterized protein LOC111448755 [Cucurbita moschata]	[more]
KGN66369.1	2.8e-14	45.22	hypothetical protein Csa_1G600090 [Cucumis sativus]	[more]
KGN66347.1	7.0e-10	41.90	hypothetical protein Csa_1G599410 [Cucumis sativus]	[more]

BLAST of Cla97C03G064860 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LZ95\|A0A0A0LZ95_CUCSA	1.8e-14	45.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G600090 PE=4 SV=1	[more]
tr\|A0A0A0LZP6\|A0A0A0LZP6_CUCSA	4.6e-10	41.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G599410 PE=4 SV=1	[more]
tr\|A0A2P5EE91\|A0A2P5EE91_9ROSA	5.7e-08	39.50	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_203870 PE=4 S...	[more]
tr\|A0A2P5D5Y9\|A0A2P5D5Y9_PARAD	5.7e-08	39.50	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_093300 PE...	[more]
tr\|A0A1U8B596\|A0A1U8B596_NELNU	2.8e-07	39.17	uncharacterized protein LOC104610941 OS=Nelumbo nucifera OX=4432 GN=LOC104610941...	[more]

BLAST of Cla97C03G064860 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C03G064860 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C03G064860.1	Cla97C03G064860.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35495	FAMILY NOT NAMED	coord: 5..118
None	No IPR available	PANTHER	PTHR35495:SF2	SUBFAMILY NOT NAMED	coord: 5..118

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C03G064860	Cla011117	Watermelon (97103) v1	wmwmbB125
Cla97C03G064860	Csa1G599410	Cucumber (Chinese Long) v2	cuwmbB042
Cla97C03G064860	ClCG03G014620	Watermelon (Charleston Gray)	wcgwmbB186
Cla97C03G064860	Lsi06G003850	Bottle gourd (USVL1VR-Ls)	lsiwmbB365
Cla97C03G064860	CsaV3_1G041540	Cucumber (Chinese Long) v3	cucwmbB041
Cla97C03G064860	Bhi02G001463	Wax gourd	wgowmbB630

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C03G064860	Silver-seed gourd	carwmbB0094
Cla97C03G064860	Silver-seed gourd	carwmbB0526
Cla97C03G064860	Cucumber (Gy14) v2	cgybwmbB041
Cla97C03G064860	Cucumber (Gy14) v1	cgywmbB241
Cla97C03G064860	Cucurbita maxima (Rimu)	cmawmbB064
Cla97C03G064860	Cucurbita maxima (Rimu)	cmawmbB115
Cla97C03G064860	Cucurbita moschata (Rifu)	cmowmbB051
Cla97C03G064860	Cucurbita moschata (Rifu)	cmowmbB100
Cla97C03G064860	Wild cucumber (PI 183967)	cpiwmbB043
Cla97C03G064860	Melon (DHL92) v3.6.1	medwmbB235
Cla97C03G064860	Melon (DHL92) v3.5.1	mewmbB249