Cla97C03G062950 (gene) Watermelon (97103) v2

Overview
NameCla97C03G062950
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptionpentatricopeptide repeat-containing protein At5g01110
LocationCla97Chr03 : 24851685 .. 24854265 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTTCATCGACTTCCTCTCCCAAAATCCACATTCAGAAGTGGAATTCTCGCATCAACATTCACATCTGCAACTCCTTTACTTCGTGCTAATATCATTTCTCTTGGACTTCACACCAACTATTCGCTCCCCAAATTTCGTTCTAATACTCCTCCTCGATCCCTCCAAACCCATGTCACTCCAGACCTTCCCCATCTCGATCCTGTCTCTTCTTCACTCTCTCCCTCGGATTCATTTCTAGTGGAAAAGATTTTGTTCAGTTTGAAGCAGAATAATGTAAGTTATTTGTCAAATTCTCTTTTCCGCCTGAACCCTTCACTTTTACTCCAAGTTCTCTGTAGGTGTCGTGAAAATTTACATTTGGGCTTAAAATTTATTGGTTTAGTTTCTTCTAATTGCCCTAATTTCAAGCATTCCTTACTTTCTTTGAGTGCAATGGTTCATTTTTTAGTGCGCGGCAGGAGGCTCTCAGAAGCCCAAGCTTGCATTCTTAGGATGGTGAGGAAGAGCGGTGTCTCACGAGTTGAGGTCGTTGAATCCTTAATTTCAACGTGTGGTAATTTTGGGTCGATTGGTTTGGTTTCTGATTTGTTAGTAAGGACGTATGTGCAAGCTAGAAAGTTAAGAGAAGGGTCCGAAGCATTTCGAATTTTGAGGAGCAAAGGAGTTTCTGTTTCTATAAATGCTTGTAACAGTCTCCTTGGTGGTCTTGTGAAGATTGGGTGGGTTGATTTAGCTTGGGAAATATATGGGGAAGTGGTGAGAGGGGGTATTGAGTTGAATGTTTATACTCTGAACATTATGGTTAATGCTCTATGTAAAGACCACAAAATTGAGAATGTGAACTTGTTCTTATCAGATATGGAAGAGAAAGGAGTTTTTGCTGACATTGTGACATATAATACTCTCATCAGTGCTTACTGCCGTGAAGGACTTGTTGAAGAAGCCTTCAAACGATTGAATTCAATCTTGGGTAAGGGTATGAAACCGGGCCTTCTAACTTATAATGCTATCATGAATGGCCTGTGTAAGATAGGTAAGTATGATAGGGCAAAGGACGTTTTGAATGAGATGGTGCAACTTGGGTTAAGGCCTGATGCTGCTACGTATAACACATTGCTAGTGGAGATTTGTCGAAGAGATAATATTTTAGAAGCTCAAAAGATATTTGACGAAATGTCACGTCATGGTGTTCTTCCTGATCTGGTTAGTTTTAGTTCTCTGATTGGTGTGCTTGCAAGGAATGGGCATCTTGATCGGGCTTTTATGTATTTTAGAGAGATGAAAAGTATTGGTCTAGTGCCTGATAACGTTATTTATACTATTCTTATCGATGCGTTTTGTCGAAATGGTGCTATTTCAGATGCTTTGAAAATGCGGGATGAGATGCTTGCTCAGGGTTGTTTTATGGATATCGTTGCATATAATACTATTTTGAATGGATTATGCAAGAAGAAGATGTTTGCTGATGCAGATATGTTATTTAATGAAATGGTTGAGAGGGGTGTGTTTCCGGACTTTTATACTTTCACCACTCTCATTCATGGATATTGCAAGGATGGAAATATGGATAAAGCGCTGAATTGGTTTGGAACAATGGTTCGTACAAACCTCAAGCCAGATATAGTGACATATAACACACTGATTGATGGCTTTTGCAAAGTAGGTGAAATGGGAAGGGCCAAGGAGTTGTGGGATGATATGATCAGGAAAGATATTCTCCCTAACCACATTTCCTATGGAATTGTAATAAATGGTTTTTGTAGTTCAGGCCATTTATCTGAGGCATGGCATTTGTGTGACCAGATGGTCGAGCAGGGTATCAAACCCAATCTCGTCACTTGCAATATTTTAATTAAGGGATACTGCCGGTCTGGTGATATGCCGAAGGCATATGAGTATTTGAGCAAAATGATATCAAATGGAATAATCCCTGATAGCATCTCATATAATACTCTTATTGATGGATATATAAAAGAAGATAACCTAGAAAAAGCTTTTGTATTGATTGATGAGATGGAAAAACAAGGGCTCCAACTTGATATTATTACATATAATGTAATTTTGAATGGATTCTGTGCAAAAGGAAGAATGCAAGAGGCTGAGCAGGTATTAAGGAAAATGATTGAGAGTGGTATAAATCCTGACAGAGCGACGTACTCTTCTCTGATAAATGGTCATGTCAGCCAAGACAATATGAAGGATGCATTTCGTTTCCATGATGAAATGCTCCAACGAGGACTTGTGCCTGATGATAGATTTTAAATTTGCACTTCATTGGATGCGTGTTGACTATTTAATTTAGGCAAGGGTCTCTTTTCTCTCTTGTGTGTGCATGCACACTCACTCCTTTTATATACCACTTTATTTATCTATTAAACTGTAAATCAAATTGGTAGGTTATGTTTTATAATCGCTTAATATGAGAGTGTCATGTTCACACTAATACTGAATATACTGATAAATATATCTCTGCTCAATATTTAAAGTGCCAACTTAATCTTTCGTGCAGGGATACTTCACATATAATCTGAACCTGGATGCTGATATTTTAGCTTTGATGGCTTTGACTCCTTGA

mRNA sequence

ATGGCTGTTCATCGACTTCCTCTCCCAAAATCCACATTCAGAAGTGGAATTCTCGCATCAACATTCACATCTGCAACTCCTTTACTTCGTGCTAATATCATTTCTCTTGGACTTCACACCAACTATTCGCTCCCCAAATTTCGTTCTAATACTCCTCCTCGATCCCTCCAAACCCATGTCACTCCAGACCTTCCCCATCTCGATCCTGTCTCTTCTTCACTCTCTCCCTCGGATTCATTTCTAGTGGAAAAGATTTTGTTCAGTTTGAAGCAGAATAATGGATACTTCACATATAATCTGAACCTGGATGCTGATATTTTAGCTTTGATGGCTTTGACTCCTTGA

Coding sequence (CDS)

ATGGCTGTTCATCGACTTCCTCTCCCAAAATCCACATTCAGAAGTGGAATTCTCGCATCAACATTCACATCTGCAACTCCTTTACTTCGTGCTAATATCATTTCTCTTGGACTTCACACCAACTATTCGCTCCCCAAATTTCGTTCTAATACTCCTCCTCGATCCCTCCAAACCCATGTCACTCCAGACCTTCCCCATCTCGATCCTGTCTCTTCTTCACTCTCTCCCTCGGATTCATTTCTAGTGGAAAAGATTTTGTTCAGTTTGAAGCAGAATAATGGATACTTCACATATAATCTGAACCTGGATGCTGATATTTTAGCTTTGATGGCTTTGACTCCTTGA

Protein sequence

MAVHRLPLPKSTFRSGILASTFTSATPLLRANIISLGLHTNYSLPKFRSNTPPRSLQTHVTPDLPHLDPVSSSLSPSDSFLVEKILFSLKQNNGYFTYNLNLDADILALMALTP
Homology
[Close]
BLAST of Cla97C03G062950 vs. NCBI nr
Match: XP_008450352.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g01110 [Cucumis melo] >XP_008450353.1 PREDICTED: pentatricopeptide repeat-containing protein At5g01110 [Cucumis melo] >XP_008450354.1 PREDICTED: pentatricopeptide repeat-containing protein At5g01110 [Cucumis melo] >XP_008450355.1 PREDICTED: pentatricopeptide repeat-containing protein At5g01110 [Cucumis melo])

HSP 1 Score: 112.8 bits (281), Expect = 7.5e-22
Identity = 67/93 (72.04%), Postives = 71/93 (76.34%), Query Frame = 0 

Query: 1  MAVHRLPLPKSTFRSGILASTFTSATPLLRANIISLGLHTNYSLPKFRSNTPPRSLQTHV 60
          MAVHRLPLPKSTFRSGIL+S FTS+TPLL  N  S  LHT YS     SNT  R LQT  
Sbjct: 1  MAVHRLPLPKSTFRSGILSSKFTSSTPLLPTNFNSFKLHTIYS----PSNTALRFLQTQS 60

Query: 61 TPDLPHLDPVSSSLSPSDSFLVEKILFSLKQNN 94
          TP  P  DPVSSS+SPSDSFL+EKILFSLKQNN
Sbjct: 61 TPG-PLYDPVSSSVSPSDSFLLEKILFSLKQNN 88

[Close]
BLAST of Cla97C03G062950 vs. NCBI nr
Match: XP_004139059.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g01110 [Cucumis sativus] >XP_011660161.1 PREDICTED: pentatricopeptide repeat-containing protein At5g01110 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 2.8e-21
Identity = 66/93 (70.97%), Postives = 70/93 (75.27%), Query Frame = 0 

Query: 1  MAVHRLPLPKSTFRSGILASTFTSATPLLRANIISLGLHTNYSLPKFRSNTPPRSLQTHV 60
          MAVHRLPLP STFRSGIL+S FTS+TPLL A   S  LHT YS     SNT  R LQTH 
Sbjct: 1  MAVHRLPLPNSTFRSGILSSKFTSSTPLLPAIFNSFTLHTIYS----PSNTALRFLQTHS 60

Query: 61 TPDLPHLDPVSSSLSPSDSFLVEKILFSLKQNN 94
           P  PH  PVSSSLSPSDSFL+EKILF+LKQNN
Sbjct: 61 APAPPH--PVSSSLSPSDSFLLEKILFTLKQNN 87

[Close]
BLAST of Cla97C03G062950 vs. NCBI nr
Match: XP_022973817.1 (pentatricopeptide repeat-containing protein At5g01110 [Cucurbita maxima] >XP_022973822.1 pentatricopeptide repeat-containing protein At5g01110 [Cucurbita maxima])

HSP 1 Score: 102.8 bits (255), Expect = 7.7e-19
Identity = 61/93 (65.59%), Postives = 66/93 (70.97%), Query Frame = 0 

Query: 1  MAVHRLPLPKSTFRSGILASTFTSATPLLRANIISLGLHTNYSLPKFRSNTPPRSLQTHV 60
          MA HRLPLPK TFR+ ILASTFT ATPLLRAN IS   H  YSLPKF       S+    
Sbjct: 9  MAAHRLPLPKPTFRTRILASTFTYATPLLRANSISFTFHLIYSLPKF------HSIHDEA 68

Query: 61 TPDLPHLDPVSSSLSPSDSFLVEKILFSLKQNN 94
          +    H DPVSSS+S S+SFLVEKILFSLKQNN
Sbjct: 69 SGSSNH-DPVSSSVSASNSFLVEKILFSLKQNN 94

[Close]
BLAST of Cla97C03G062950 vs. NCBI nr
Match: XP_023530884.1 (pentatricopeptide repeat-containing protein At5g01110 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 101.3 bits (251), Expect = 2.2e-18
Identity = 60/93 (64.52%), Postives = 64/93 (68.82%), Query Frame = 0 

Query: 1  MAVHRLPLPKSTFRSGILASTFTSATPLLRANIISLGLHTNYSLPKFRSNTPPRSLQTHV 60
          MA HRLPLPK TFR+ ILA TFT ATPLLRAN IS   H  YSLPKF       S+    
Sbjct: 8  MAAHRLPLPKPTFRTRILAPTFTYATPLLRANFISFTFHLFYSLPKF------HSIHDEA 67

Query: 61 TPDLPHLDPVSSSLSPSDSFLVEKILFSLKQNN 94
               H DPVSSS+S S+SFLVEKILFSLKQNN
Sbjct: 68 AGSSNH-DPVSSSVSASNSFLVEKILFSLKQNN 93

[Close]
BLAST of Cla97C03G062950 vs. NCBI nr
Match: XP_022933790.1 (pentatricopeptide repeat-containing protein At5g01110 [Cucurbita moschata])

HSP 1 Score: 95.1 bits (235), Expect = 1.6e-16
Identity = 57/93 (61.29%), Postives = 63/93 (67.74%), Query Frame = 0 

Query: 1  MAVHRLPLPKSTFRSGILASTFTSATPLLRANIISLGLHTNYSLPKFRSNTPPRSLQTHV 60
          MA HRLPLPK TFR+ I+AST T ATPLLR+N IS   H  YSLPKF       S+    
Sbjct: 8  MAAHRLPLPKPTFRTRIIASTVTYATPLLRSNSISFTFHLFYSLPKF------HSIHDEA 67

Query: 61 TPDLPHLDPVSSSLSPSDSFLVEKILFSLKQNN 94
               H  PVSSS+S S+SFLVEKILFSLKQNN
Sbjct: 68 AGSSNH-GPVSSSVSASNSFLVEKILFSLKQNN 93

[Close]
BLAST of Cla97C03G062950 vs. TrEMBL
Match: tr|A0A1S3BNF5|A0A1S3BNF5_CUCME (pentatricopeptide repeat-containing protein At5g01110 OS=Cucumis melo OX=3656 GN=LOC103491986 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.9e-22
Identity = 67/93 (72.04%), Postives = 71/93 (76.34%), Query Frame = 0 

Query: 1  MAVHRLPLPKSTFRSGILASTFTSATPLLRANIISLGLHTNYSLPKFRSNTPPRSLQTHV 60
          MAVHRLPLPKSTFRSGIL+S FTS+TPLL  N  S  LHT YS     SNT  R LQT  
Sbjct: 1  MAVHRLPLPKSTFRSGILSSKFTSSTPLLPTNFNSFKLHTIYS----PSNTALRFLQTQS 60

Query: 61 TPDLPHLDPVSSSLSPSDSFLVEKILFSLKQNN 94
          TP  P  DPVSSS+SPSDSFL+EKILFSLKQNN
Sbjct: 61 TPG-PLYDPVSSSVSPSDSFLLEKILFSLKQNN 88

The following BLAST results are available for this feature:
BLAST of Cla97C03G062950 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008450352.17.5e-2272.04PREDICTED: pentatricopeptide repeat-containing protein At5g01110 [Cucumis melo] ... [more]
XP_004139059.12.8e-2170.97PREDICTED: pentatricopeptide repeat-containing protein At5g01110 [Cucumis sativu... [more]
XP_022973817.17.7e-1965.59pentatricopeptide repeat-containing protein At5g01110 [Cucurbita maxima] >XP_022... [more]
XP_023530884.12.2e-1864.52pentatricopeptide repeat-containing protein At5g01110 [Cucurbita pepo subsp. pep... [more]
XP_022933790.11.6e-1661.29pentatricopeptide repeat-containing protein At5g01110 [Cucurbita moschata][more]
BLAST of Cla97C03G062950 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BNF5|A0A1S3BNF5_CUCME4.9e-2272.04pentatricopeptide repeat-containing protein At5g01110 OS=Cucumis melo OX=3656 GN... [more]
BLAST of Cla97C03G062950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C03G062950 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C03G062950.1Cla97C03G062950.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C03G062950Bhi02G001255Wax gourdwgowmbB630
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C03G062950Watermelon (97103) v2wmbwmbB093
Cla97C03G062950Silver-seed gourdcarwmbB0448
Cla97C03G062950Silver-seed gourdcarwmbB0546
Cla97C03G062950Silver-seed gourdcarwmbB1019
Cla97C03G062950Cucumber (Gy14) v2cgybwmbB041
Cla97C03G062950Cucumber (Gy14) v1cgywmbB232
Cla97C03G062950Cucurbita maxima (Rimu)cmawmbB060
Cla97C03G062950Cucurbita maxima (Rimu)cmawmbB115
Cla97C03G062950Cucurbita maxima (Rimu)cmawmbB593
Cla97C03G062950Cucurbita moschata (Rifu)cmowmbB046
Cla97C03G062950Cucurbita moschata (Rifu)cmowmbB100
Cla97C03G062950Cucurbita moschata (Rifu)cmowmbB568
Cla97C03G062950Wild cucumber (PI 183967)cpiwmbB043
Cla97C03G062950Wild cucumber (PI 183967)cpiwmbB476
Cla97C03G062950Cucumber (Chinese Long) v3cucwmbB041
Cla97C03G062950Cucumber (Chinese Long) v2cuwmbB042
Cla97C03G062950Cucumber (Chinese Long) v2cuwmbB452
Cla97C03G062950Bottle gourd (USVL1VR-Ls)lsiwmbB065
Cla97C03G062950Bottle gourd (USVL1VR-Ls)lsiwmbB365
Cla97C03G062950Melon (DHL92) v3.6.1medwmbB235
Cla97C03G062950Melon (DHL92) v3.6.1medwmbB371
Cla97C03G062950Melon (DHL92) v3.5.1mewmbB249
Cla97C03G062950Melon (DHL92) v3.5.1mewmbB381
Cla97C03G062950Watermelon (Charleston Gray)wcgwmbB152
Cla97C03G062950Watermelon (Charleston Gray)wcgwmbB186
Cla97C03G062950Watermelon (97103) v1wmwmbB127
Cla97C03G062950Watermelon (97103) v1wmwmbB335
Cla97C03G062950Wax gourdwgowmbB379