Cla97C03G062870 (gene) Watermelon (97103) v2

Overview
NameCla97C03G062870
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr03 : 24506845 .. 24507970 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATCTCGGAGTGCTTTCTCACTTCCTTCTTTTCAGTATGTTTTAGTTCCGCTTAGGCTAGTTGGTTCTGCATTCTTCTCTCTCCCTTCTCCAAATTAGTTTTATTTTTTATTTTTAATTTCTCTCCCTAGTTTGAATGAAAGAACTAAAAAGAAAAAATAATAATGAAACTAGTTTTCCACTGTACTGCCGTGAAAAGTGCAGTCTTCAGATGATAAATTAGAAAATTATAAGAACTTGTGTACCTTCGGAGTAATGACAGATCAATCTGATTTTTTTCAAGCTTTTTTTGTGGTATGTCCTTGTATTTTCTTTCCTTTTACTCAATCAAAGCTTGGTTCCTTACAAAAACAAAAGAGGAAAAAGAAAATTGTACCAGCAAATTAAAATTTGGGTAATGGGGTAGCTTTATCATAAGTTCATCGGACTTTTACTCAATGCATAGGGGACACATTGGTGTAAGTTATCTATTTTGACTTTTAGTGTTATCTTGTTGGCTTTTGTGTGTACACAAAACTTGGGCGGTTAGGTGTAAGATGATTTTATTTTACATATACTGCATTGTGTTTTTGTAGCGAAATGGCCGAGCTCTCCAGCAAAAGGAGGAAGAGAAAATTGGGAACATTGTTCGATGAGCTGTTCGTATGGAAGTAAATTGCCTTGTCAGGTTGGTTTGGGTGGTTAGAAGGTCTTCTTAAGTTCTTCGGTTTTGGGGCTTATCTCAAGGGATTGATTGGTGGGATAAGATGGTGTACTCAGTAATCTACTTAACTGTCGAGTCTAGCTGTCGAAATTGCTTTTACTATCATCCGAAGGCAGGTGATACTATTGTGCTGCTTGGCAAGTTGTCTCTGAAGACTTTGGCGTATTCTATGCGGGTAAGAATCTACATTACCTGAACTGGATGATGGTGTGGGTTTCAAATTCCCATATGTTTGGTTTGGATGATTACACTCTTTGAACATGAAATCATCACCCCTTTACTTTCAGTTGTGAAAGAGGAGGGGTTGGTTATTATGCACTATTTTGTTATGACTCAGCTGGAATCTTTAGGAACCTTCCTAGTTTTAAATGTTGTCGATTTCGAATCGGGGCTTTCTTCTAGTACGGAAATAATTTGTTGA

mRNA sequence

ATGCATCTCGGAGTGCTTTCTCACTTCCTTCTTTTCACGAAATGGCCGAGCTCTCCAGCAAAAGGAGGAAGAGAAAATTGGGAACATTGTTCGATGAGCTGTTCGTATGGAAGTAAATTGCCTTGTCAGATGGTGTACTCAGTAATCTACTTAACTGTCGAGTCTAGCTGTCGAAATTGCTTTTACTATCATCCGAAGGCAGGTGATACTATTGTGCTGCTTGGCAAGTTGTCTCTGAAGACTTTGGCGTATTCTATGCGGCTGGAATCTTTAGGAACCTTCCTAGTTTTAAATGTTGTCGATTTCGAATCGGGGCTTTCTTCTAGTACGGAAATAATTTGTTGA

Coding sequence (CDS)

ATGCATCTCGGAGTGCTTTCTCACTTCCTTCTTTTCACGAAATGGCCGAGCTCTCCAGCAAAAGGAGGAAGAGAAAATTGGGAACATTGTTCGATGAGCTGTTCGTATGGAAGTAAATTGCCTTGTCAGATGGTGTACTCAGTAATCTACTTAACTGTCGAGTCTAGCTGTCGAAATTGCTTTTACTATCATCCGAAGGCAGGTGATACTATTGTGCTGCTTGGCAAGTTGTCTCTGAAGACTTTGGCGTATTCTATGCGGCTGGAATCTTTAGGAACCTTCCTAGTTTTAAATGTTGTCGATTTCGAATCGGGGCTTTCTTCTAGTACGGAAATAATTTGTTGA

Protein sequence

MHLGVLSHFLLFTKWPSSPAKGGRENWEHCSMSCSYGSKLPCQMVYSVIYLTVESSCRNCFYYHPKAGDTIVLLGKLSLKTLAYSMRLESLGTFLVLNVVDFESGLSSSTEIIC
Homology
[Close]
BLAST of Cla97C03G062870 vs. NCBI nr
Match: KGN66549.1 (hypothetical protein Csa_1G629060 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 2.1e-08
Identity = 33/38 (86.84%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 43 QMVYSVIYLTVESSCRNCFYYHPKAGDTI-VLLGKLSL 80
          +MVYSVIYLTVESSCRNCFYYHPKAGD I VLLGK  L
Sbjct: 24 KMVYSVIYLTVESSCRNCFYYHPKAGDDIVVLLGKFCL 61

[Close]
BLAST of Cla97C03G062870 vs. TrEMBL
Match: tr|A0A0A0LZW1|A0A0A0LZW1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629060 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-08
Identity = 33/38 (86.84%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 43 QMVYSVIYLTVESSCRNCFYYHPKAGDTI-VLLGKLSL 80
          +MVYSVIYLTVESSCRNCFYYHPKAGD I VLLGK  L
Sbjct: 24 KMVYSVIYLTVESSCRNCFYYHPKAGDDIVVLLGKFCL 61

The following BLAST results are available for this feature:
BLAST of Cla97C03G062870 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66549.12.1e-0886.84hypothetical protein Csa_1G629060 [Cucumis sativus][more]
BLAST of Cla97C03G062870 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LZW1|A0A0A0LZW1_CUCSA1.4e-0886.84Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629060 PE=4 SV=1[more]
BLAST of Cla97C03G062870 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C03G062870 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C03G062870.1Cla97C03G062870.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C03G062870Csa1G629060Cucumber (Chinese Long) v2cuwmbB042
Cla97C03G062870CsGy1G030280Cucumber (Gy14) v2cgybwmbB041
Cla97C03G062870CsaV3_1G043440Cucumber (Chinese Long) v3cucwmbB041
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C03G062870Silver-seed gourdcarwmbB0928
Cla97C03G062870Silver-seed gourdcarwmbB1019
Cla97C03G062870Cucumber (Gy14) v1cgywmbB610
Cla97C03G062870Cucurbita maxima (Rimu)cmawmbB060
Cla97C03G062870Cucurbita maxima (Rimu)cmawmbB115
Cla97C03G062870Cucurbita moschata (Rifu)cmowmbB046
Cla97C03G062870Cucurbita moschata (Rifu)cmowmbB100
Cla97C03G062870Wild cucumber (PI 183967)cpiwmbB043
Cla97C03G062870Bottle gourd (USVL1VR-Ls)lsiwmbB365
Cla97C03G062870Melon (DHL92) v3.6.1medwmbB235
Cla97C03G062870Melon (DHL92) v3.5.1mewmbB249
Cla97C03G062870Watermelon (Charleston Gray)wcgwmbB186
Cla97C03G062870Watermelon (97103) v1wmwmbB127
Cla97C03G062870Wax gourdwgowmbB630