Cla97C03G061700 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C03G061700
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Nucleic acid-binding, OB-fold-like protein
Location	Cla97Chr03 : 20264368 .. 20264862 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAGCGGATTCCTGGGCGTTGACGAATGGCCGGCCACCTTTTACGTTAGAAGAGCAAAAGGCCCGGGGCATAGCTGGATGAACCAATGTGAATGAGTGTAAGCTTCGTGACCCGAACACGATTGGTGCTGACCACACTAGGTGCTACCGTGGTAGCAAGAGAGGCCAGGCGGTGACAATTGAGAGGTTGTCACTGAGCATTCCTAGTCACACGGGAAGAGAGGTCAAATGGCAAGGCCATACGCCCGTTTGGCTCCTCGCGGAGTATAGCTCACATCCAAACATCTGATTGGGGAACGGGGCAACGCCCATGAAGCTCCGGCGGAAAGGGAAGGCCTGCCAGGCCGTATGCCCATGGGTGCAGGATTCTTCGAAAAAGCGCGGGCTGACTCGGAGACCTGGGACCTTGGCTTAGCAACGAATGAAGGGGAGCTCTTCGAGCTTTCTCCGCCAGTGGCTTATGTAGTGGTCGGCCGGCGGAAAGCTCGCTAA

mRNA sequence

ATGTCAAGCGGATTCCTGGGCGTTGACGAATGGCCGGCCACCTTTTACCTCACATCCAAACATCTGATTGGGGAACGGGGCAACGCCCATGAAGCTCCGGCGGAAAGGGAAGGCCTGCCAGGCCGTATGCCCATGGGTGCAGGATTCTTCGAAAAAGCGCGGGCTGACTCGGAGACCTGGGACCTTGGCTTAGCAACGAATGAAGGGGAGCTCTTCGAGCTTTCTCCGCCAGTGGCTTATGTAGTGGTCGGCCGGCGGAAAGCTCGCTAA

Coding sequence (CDS)

ATGTCAAGCGGATTCCTGGGCGTTGACGAATGGCCGGCCACCTTTTACCTCACATCCAAACATCTGATTGGGGAACGGGGCAACGCCCATGAAGCTCCGGCGGAAAGGGAAGGCCTGCCAGGCCGTATGCCCATGGGTGCAGGATTCTTCGAAAAAGCGCGGGCTGACTCGGAGACCTGGGACCTTGGCTTAGCAACGAATGAAGGGGAGCTCTTCGAGCTTTCTCCGCCAGTGGCTTATGTAGTGGTCGGCCGGCGGAAAGCTCGCTAA

Protein sequence

MSSGFLGVDEWPATFYLTSKHLIGERGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNEGELFELSPPVAYVVVGRRKAR

Homology

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BLAST of Cla97C03G061700 vs. NCBI nr
Match: OIT06415.1 (60s ribosomal protein l2, mitochondrial [Nicotiana attenuata])

HSP 1 Score: 159.1 bits (401), Expect = 7.1e-36
Identity = 79/105 (75.24%), Postives = 81/105 (77.14%), Query Frame = 0


Query: 1   MSSGFLGVDEWPATFY---------------------LTSKHLIGERGNAHEAPAEREGL 60
           MSSGFLG+DEWPATFY                     LTSKHLIGERGNAHEAPAEREGL
Sbjct: 187 MSSGFLGLDEWPATFYRGQAVTIERLSLSIPSHTGKELTSKHLIGERGNAHEAPAEREGL 246

Query: 61  PGRMPMGAGFFEKARADSETWDLGLATNEGELFELSPPVAYVVVG 85
           PGRMPMGAGFFEKARADSETWDLGL  NEG+LFELSPP AYVVVG
Sbjct: 247 PGRMPMGAGFFEKARADSETWDLGLVMNEGKLFELSPPAAYVVVG 291

[Close]

BLAST of Cla97C03G061700 vs. NCBI nr
Match: OIT27644.1 (60s ribosomal protein l2, mitochondrial [Nicotiana attenuata])

HSP 1 Score: 153.3 bits (386), Expect = 3.9e-34
Identity = 76/105 (72.38%), Postives = 80/105 (76.19%), Query Frame = 0


Query: 1   MSSGFLGVDEWPATFY----------------------LTSKHLIGERGNAHEAPAEREG 60
           MSSGFLG+DEWPATFY                      LTSKHLIGERGNAHEAPAEREG
Sbjct: 187 MSSGFLGLDEWPATFYQRGQAVTIERLSLSIPSHTGKELTSKHLIGERGNAHEAPAEREG 246

Query: 61  LPGRMPMGAGFFEKARADSETWDLGLATNEGELFELSPPVAYVVV 84
           LPGR+PMGAGFFEKARADSETWDLGL  NEG+LF+LSPP AYVVV
Sbjct: 247 LPGRIPMGAGFFEKARADSETWDLGLVMNEGKLFKLSPPAAYVVV 291

[Close]

BLAST of Cla97C03G061700 vs. NCBI nr
Match: XP_023521202.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111784913 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 140.2 bits (352), Expect = 3.4e-30
Identity = 66/74 (89.19%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 16  YLTSKHLIGERGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNEGELFELS 75
           ++ + +LIGERGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNEGEL ELS
Sbjct: 320 HIQTXYLIGERGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNEGELKELS 379

Query: 76  PPVAYVVVGRRKAR 90
           PPVAYVVVGR+KAR
Sbjct: 380 PPVAYVVVGRQKAR 393

[Close]

BLAST of Cla97C03G061700 vs. NCBI nr
Match: OVA06704.1 (Ribosomal protein L2 [Macleaya cordata])

HSP 1 Score: 139.0 bits (349), Expect = 7.6e-30
Identity = 66/71 (92.96%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 17  LTSKHLIGERGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNEGELFELSP 76
           LTSKHLIGERGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNEG+L ELSP
Sbjct: 518 LTSKHLIGERGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNEGKLEELSP 577

Query: 77  PVAYVVVGRRK 88
           P AYVVVG+ K
Sbjct: 578 PAAYVVVGQLK 588

[Close]

BLAST of Cla97C03G061700 vs. NCBI nr
Match: XP_022866432.1 (uncharacterized protein LOC111386211 [Olea europaea var. sylvestris])

HSP 1 Score: 137.5 bits (345), Expect = 2.2e-29
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 17  LTSKHLIGERGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNEGELFELSP 76
           LTSKHLIGERGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNEG+L ELSP
Sbjct: 210 LTSKHLIGERGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNEGKLEELSP 269

Query: 77  PVAYVVVG 85
           P AYVVVG
Sbjct: 270 PAAYVVVG 277

[Close]

BLAST of Cla97C03G061700 vs. TrEMBL
Match: tr|A0A1J6J9A5|A0A1J6J9A5_NICAT (60s ribosomal protein l2, mitochondrial OS=Nicotiana attenuata OX=49451 GN=RPL2_1 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.7e-36
Identity = 79/105 (75.24%), Postives = 81/105 (77.14%), Query Frame = 0


Query: 1   MSSGFLGVDEWPATFY---------------------LTSKHLIGERGNAHEAPAEREGL 60
           MSSGFLG+DEWPATFY                     LTSKHLIGERGNAHEAPAEREGL
Sbjct: 187 MSSGFLGLDEWPATFYRGQAVTIERLSLSIPSHTGKELTSKHLIGERGNAHEAPAEREGL 246

Query: 61  PGRMPMGAGFFEKARADSETWDLGLATNEGELFELSPPVAYVVVG 85
           PGRMPMGAGFFEKARADSETWDLGL  NEG+LFELSPP AYVVVG
Sbjct: 247 PGRMPMGAGFFEKARADSETWDLGLVMNEGKLFELSPPAAYVVVG 291

[Close]

BLAST of Cla97C03G061700 vs. TrEMBL
Match: tr|A0A1J6KG38|A0A1J6KG38_NICAT (60s ribosomal protein l2, mitochondrial OS=Nicotiana attenuata OX=49451 GN=RPL2_3 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.6e-34
Identity = 76/105 (72.38%), Postives = 80/105 (76.19%), Query Frame = 0


Query: 1   MSSGFLGVDEWPATFY----------------------LTSKHLIGERGNAHEAPAEREG 60
           MSSGFLG+DEWPATFY                      LTSKHLIGERGNAHEAPAEREG
Sbjct: 187 MSSGFLGLDEWPATFYQRGQAVTIERLSLSIPSHTGKELTSKHLIGERGNAHEAPAEREG 246

Query: 61  LPGRMPMGAGFFEKARADSETWDLGLATNEGELFELSPPVAYVVV 84
           LPGR+PMGAGFFEKARADSETWDLGL  NEG+LF+LSPP AYVVV
Sbjct: 247 LPGRIPMGAGFFEKARADSETWDLGLVMNEGKLFKLSPPAAYVVV 291

[Close]

BLAST of Cla97C03G061700 vs. TrEMBL
Match: tr|A0A200Q8E8|A0A200Q8E8_9MAGN (Ribosomal protein L2 OS=Macleaya cordata OX=56857 GN=BVC80_6573g1 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 5.0e-30
Identity = 66/71 (92.96%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 17  LTSKHLIGERGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNEGELFELSP 76
           LTSKHLIGERGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNEG+L ELSP
Sbjct: 518 LTSKHLIGERGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNEGKLEELSP 577

Query: 77  PVAYVVVGRRK 88
           P AYVVVG+ K
Sbjct: 578 PAAYVVVGQLK 588

[Close]

BLAST of Cla97C03G061700 vs. TrEMBL
Match: tr|A0A2G3BEJ0|A0A2G3BEJ0_CAPCH (60S ribosomal protein L2, mitochondrial OS=Capsicum chinense OX=80379 GN=BC332_25733 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.0e-22
Identity = 51/60 (85.00%), Postives = 56/60 (93.33%), Query Frame = 0


Query: 25  ERGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNEGELFELSPPVAYVVVG 84
           ERGN HEAPA+REGLPGRMPMGAGFF+KARA+SETWDLGL  N+G+LFELSPP AYVVVG
Sbjct: 214 ERGNIHEAPAKREGLPGRMPMGAGFFKKARANSETWDLGLVMNKGKLFELSPPAAYVVVG 273

[Close]

BLAST of Cla97C03G061700 vs. TrEMBL
Match: tr|A0A2G3BDK1|A0A2G3BDK1_CAPCH (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_25355 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 8.0e-20
Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 22 LIGERGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNEGELFELSPPVAYV 81
          +IGERGN +EA AEREGLPGRMP+GAGFF+KA  DSETWDLGL  NEG+LFELS P  YV
Sbjct: 1  MIGERGNVYEALAEREGLPGRMPIGAGFFKKAWVDSETWDLGLVMNEGKLFELSLPATYV 60

Query: 82 VVG 85
          VVG
Sbjct: 61 VVG 63

[Close]

BLAST of Cla97C03G061700 vs. TAIR10
Match: AT2G07715.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 100.1 bits (248), Expect = 7.1e-22
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 16  YLTSKHLIGERGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNE 69
           ++   +LIGERGN HEAP EREGLPGRMPMGAGFFEKARADSETWDLGLATNE
Sbjct: 325 HIQISYLIGERGNTHEAPTEREGLPGRMPMGAGFFEKARADSETWDLGLATNE 377

The following BLAST results are available for this feature:

BLAST of Cla97C03G061700 vs. NCBI nr


Match Name	E-value	Identity	Description
OIT06415.1	7.1e-36	75.24	60s ribosomal protein l2, mitochondrial [Nicotiana attenuata]	[more]
OIT27644.1	3.9e-34	72.38	60s ribosomal protein l2, mitochondrial [Nicotiana attenuata]	[more]
XP_023521202.1	3.4e-30	89.19	LOW QUALITY PROTEIN: uncharacterized protein LOC111784913 [Cucurbita pepo subsp....	[more]
OVA06704.1	7.6e-30	92.96	Ribosomal protein L2 [Macleaya cordata]	[more]
XP_022866432.1	2.2e-29	95.59	uncharacterized protein LOC111386211 [Olea europaea var. sylvestris]	[more]

BLAST of Cla97C03G061700 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1J6J9A5\|A0A1J6J9A5_NICAT	4.7e-36	75.24	60s ribosomal protein l2, mitochondrial OS=Nicotiana attenuata OX=49451 GN=RPL2_...	[more]
tr\|A0A1J6KG38\|A0A1J6KG38_NICAT	2.6e-34	72.38	60s ribosomal protein l2, mitochondrial OS=Nicotiana attenuata OX=49451 GN=RPL2_...	[more]
tr\|A0A200Q8E8\|A0A200Q8E8_9MAGN	5.0e-30	92.96	Ribosomal protein L2 OS=Macleaya cordata OX=56857 GN=BVC80_6573g1 PE=4 SV=1	[more]
tr\|A0A2G3BEJ0\|A0A2G3BEJ0_CAPCH	5.0e-22	85.00	60S ribosomal protein L2, mitochondrial OS=Capsicum chinense OX=80379 GN=BC332_2...	[more]
tr\|A0A2G3BDK1\|A0A2G3BDK1_CAPCH	8.0e-20	77.78	Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_25355 PE=4 SV=1	[more]

BLAST of Cla97C03G061700 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C03G061700 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G07715.1	7.1e-22	84.91	Nucleic acid-binding, OB-fold-like protein	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032543	mitochondrial translation
biological_process	GO:0006412	translation
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C03G061700.1	Cla97C03G061700.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C03G061700	Silver-seed gourd	carwmbB0286
Cla97C03G061700	Silver-seed gourd	carwmbB0956
Cla97C03G061700	Cucumber (Gy14) v2	cgybwmbB035
Cla97C03G061700	Cucumber (Gy14) v1	cgywmbB679
Cla97C03G061700	Cucurbita maxima (Rimu)	cmawmbB066
Cla97C03G061700	Cucurbita maxima (Rimu)	cmawmbB111
Cla97C03G061700	Cucurbita moschata (Rifu)	cmowmbB053
Cla97C03G061700	Cucurbita moschata (Rifu)	cmowmbB097
Cla97C03G061700	Wild cucumber (PI 183967)	cpiwmbB035
Cla97C03G061700	Cucumber (Chinese Long) v3	cucwmbB033
Cla97C03G061700	Cucumber (Chinese Long) v2	cuwmbB035
Cla97C03G061700	Bottle gourd (USVL1VR-Ls)	lsiwmbB362
Cla97C03G061700	Melon (DHL92) v3.6.1	medwmbB229
Cla97C03G061700	Melon (DHL92) v3.6.1	medwmbB238
Cla97C03G061700	Melon (DHL92) v3.5.1	mewmbB244
Cla97C03G061700	Watermelon (Charleston Gray)	wcgwmbB186
Cla97C03G061700	Watermelon (97103) v1	wmwmbB126
Cla97C03G061700	Watermelon (97103) v1	wmwmbB129