Cla97C03G061090 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C03G061090
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Zinc finger, CCHC-type
Location	Cla97Chr03 : 17588222 .. 17588518 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTCCATACCTTGTCAAGGAGAGAGTTCCAAGCACTCTGTAAGAGGAATAAGATTCTGGCCAATATCACTAATGTCGCCATGGCCTCCGCTCTTGCCGCTCTCCCATCTGTTGAAGTAATCAAAGAGTTTTTGAATGGTGAAAGATTTGCAGTACCAGAATCGTCGATGAAAGAAGAGTTTGTTTCCTCCGAAATTCCACAAATTGCATTGAGAACCTCAACAAGAGAAAAGGCCGTCAAAGGTGACACAATGACTACTTATGCACAACTACTTATGCACATCATGCTGTAG

mRNA sequence

ATGGGTTTCCATACCTTGTCAAGGAGAGAGTTCCAAGCACTCTGTAAGAGGAATAAGATTCTGGCCAATATCACTAATGTCGCCATGGCCTCCGCTCTTGCCGCTCTCCCATCTGTTGAAGTAATCAAAGAGTTTTTGAATGGTGAAAGATTTGCAGTACCAGAATCGTCGATGAAAGAAGAGTTTGTTTCCTCCGAAATTCCACAAATTGCATTGAGAACCTCAACAAGAGAAAAGGCCGTCAAAGGTGACACAATGACTACTTATGCACAACTACTTATGCACATCATGCTGTAG

Coding sequence (CDS)

ATGGGTTTCCATACCTTGTCAAGGAGAGAGTTCCAAGCACTCTGTAAGAGGAATAAGATTCTGGCCAATATCACTAATGTCGCCATGGCCTCCGCTCTTGCCGCTCTCCCATCTGTTGAAGTAATCAAAGAGTTTTTGAATGGTGAAAGATTTGCAGTACCAGAATCGTCGATGAAAGAAGAGTTTGTTTCCTCCGAAATTCCACAAATTGCATTGAGAACCTCAACAAGAGAAAAGGCCGTCAAAGGTGACACAATGACTACTTATGCACAACTACTTATGCACATCATGCTGTAG

Protein sequence

MGFHTLSRREFQALCKRNKILANITNVAMASALAALPSVEVIKEFLNGERFAVPESSMKEEFVSSEIPQIALRTSTREKAVKGDTMTTYAQLLMHIML

Homology

[Close]

BLAST of Cla97C03G061090 vs. NCBI nr
Match: KGN49703.1 (hypothetical protein Csa_5G077220 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 7.3e-26
Identity = 68/88 (77.27%), Postives = 74/88 (84.09%), Query Frame = 0


Query: 1  MGFHTLSRREFQALCKRNKILANITNVAMASALAALPSVEVIKEFLNGERFAVPESSMKE 60
          M FHTLSRRE QALCKRNKI ANITNVAMA ALAAL SVE I+EFLNG+R  VPES MK 
Sbjct: 1  MDFHTLSRRELQALCKRNKIPANITNVAMADALAALQSVEGIEEFLNGDRSGVPESPMKA 60

Query: 61 EFVSSEIPQIALRTSTREKAVKGDTMTT 89
            +SSEIP+IALRTSTR KAVK +T+TT
Sbjct: 61 GVISSEIPRIALRTSTRRKAVKDETITT 88

[Close]

BLAST of Cla97C03G061090 vs. NCBI nr
Match: XP_008467303.1 (PREDICTED: probable beta-tubulin polyglutamylase [Cucumis melo])

HSP 1 Score: 120.9 bits (302), Expect = 2.4e-24
Identity = 66/88 (75.00%), Postives = 72/88 (81.82%), Query Frame = 0


Query: 1  MGFHTLSRREFQALCKRNKILANITNVAMASALAALPSVEVIKEFLNGERFAVPESSMKE 60
          M FHTLSRRE QALCKRNKI ANITNVAMA ALAAL SVE I+EFLNG+R  V ES MK 
Sbjct: 1  MDFHTLSRRELQALCKRNKIPANITNVAMADALAALQSVEGIEEFLNGDRSGVSESPMKV 60

Query: 61 EFVSSEIPQIALRTSTREKAVKGDTMTT 89
          E +S EIP+ ALRTSTR KAVK +T+TT
Sbjct: 61 EVISLEIPRTALRTSTRRKAVKDETITT 88

[Close]

BLAST of Cla97C03G061090 vs. NCBI nr
Match: KGN50365.1 (hypothetical protein Csa_5G169010 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 2.6e-23
Identity = 67/89 (75.28%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 1  MGFHTLSRREFQALCKRNKILANITNVAMASALAALPSVEVIKEFLNGERFAVPESSMK- 60
          M F+TLSRRE QALCKRNKI ANITNVAMA ALAAL SVE I+EFL+G+R  VPES MK 
Sbjct: 1  MDFYTLSRRELQALCKRNKIPANITNVAMADALAALQSVEGIEEFLDGDRSGVPESPMKG 60

Query: 61 EEFVSSEIPQIALRTSTREKAVKGDTMTT 89
          EE VSSEI + ALRTSTR KAVK +T+TT
Sbjct: 61 EEVVSSEIARTALRTSTRRKAVKDETITT 89

[Close]

BLAST of Cla97C03G061090 vs. NCBI nr
Match: XP_011656161.1 (PREDICTED: uncharacterized protein LOC105435645 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 2.6e-23
Identity = 67/89 (75.28%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 1  MGFHTLSRREFQALCKRNKILANITNVAMASALAALPSVEVIKEFLNGERFAVPESSMK- 60
          M F+TLSRRE QALCKRNKI ANITNVAMA ALAAL SVE I+EFL+G+R  VPES MK 
Sbjct: 1  MDFYTLSRRELQALCKRNKIPANITNVAMADALAALQSVEGIEEFLDGDRSGVPESPMKG 60

Query: 61 EEFVSSEIPQIALRTSTREKAVKGDTMTT 89
          EE VSSEI + ALRTSTR KAVK +T+TT
Sbjct: 61 EEVVSSEIARTALRTSTRRKAVKDETITT 89

[Close]

BLAST of Cla97C03G061090 vs. NCBI nr
Match: XP_023549683.1 (uncharacterized protein LOC111808107 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 116.7 bits (291), Expect = 4.4e-23
Identity = 64/88 (72.73%), Postives = 69/88 (78.41%), Query Frame = 0


Query: 1  MGFHTLSRREFQALCKRNKILANITNVAMASALAALPSVEVIKEFLNGERFAVPESSMKE 60
          M FH+LSRRE Q LCKRNKI ANITNVAMA AL+ALP VE I EFL+ ER  VPES MK 
Sbjct: 1  MDFHSLSRRELQTLCKRNKIPANITNVAMADALSALPLVEGIDEFLSSERSGVPESPMKG 60

Query: 61 EFVSSEIPQIALRTSTREKAVKGDTMTT 89
          E VSSEIP+  LRTSTR KAVK D +TT
Sbjct: 61 EVVSSEIPRTELRTSTRRKAVKDDPITT 88

[Close]

BLAST of Cla97C03G061090 vs. TrEMBL
Match: tr|A0A0A0KJF8|A0A0A0KJF8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G077220 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.8e-26
Identity = 68/88 (77.27%), Postives = 74/88 (84.09%), Query Frame = 0


Query: 1  MGFHTLSRREFQALCKRNKILANITNVAMASALAALPSVEVIKEFLNGERFAVPESSMKE 60
          M FHTLSRRE QALCKRNKI ANITNVAMA ALAAL SVE I+EFLNG+R  VPES MK 
Sbjct: 1  MDFHTLSRRELQALCKRNKIPANITNVAMADALAALQSVEGIEEFLNGDRSGVPESPMKA 60

Query: 61 EFVSSEIPQIALRTSTREKAVKGDTMTT 89
            +SSEIP+IALRTSTR KAVK +T+TT
Sbjct: 61 GVISSEIPRIALRTSTRRKAVKDETITT 88

[Close]

BLAST of Cla97C03G061090 vs. TrEMBL
Match: tr|A0A1S3CT90|A0A1S3CT90_CUCME (probable beta-tubulin polyglutamylase OS=Cucumis melo OX=3656 GN=LOC103504683 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.6e-24
Identity = 66/88 (75.00%), Postives = 72/88 (81.82%), Query Frame = 0


Query: 1  MGFHTLSRREFQALCKRNKILANITNVAMASALAALPSVEVIKEFLNGERFAVPESSMKE 60
          M FHTLSRRE QALCKRNKI ANITNVAMA ALAAL SVE I+EFLNG+R  V ES MK 
Sbjct: 1  MDFHTLSRRELQALCKRNKIPANITNVAMADALAALQSVEGIEEFLNGDRSGVSESPMKV 60

Query: 61 EFVSSEIPQIALRTSTREKAVKGDTMTT 89
          E +S EIP+ ALRTSTR KAVK +T+TT
Sbjct: 61 EVISLEIPRTALRTSTRRKAVKDETITT 88

[Close]

BLAST of Cla97C03G061090 vs. TrEMBL
Match: tr|A0A0A0KKZ3|A0A0A0KKZ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G169010 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.7e-23
Identity = 67/89 (75.28%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 1  MGFHTLSRREFQALCKRNKILANITNVAMASALAALPSVEVIKEFLNGERFAVPESSMK- 60
          M F+TLSRRE QALCKRNKI ANITNVAMA ALAAL SVE I+EFL+G+R  VPES MK 
Sbjct: 1  MDFYTLSRRELQALCKRNKIPANITNVAMADALAALQSVEGIEEFLDGDRSGVPESPMKG 60

Query: 61 EEFVSSEIPQIALRTSTREKAVKGDTMTT 89
          EE VSSEI + ALRTSTR KAVK +T+TT
Sbjct: 61 EEVVSSEIARTALRTSTRRKAVKDETITT 89

[Close]

BLAST of Cla97C03G061090 vs. TrEMBL
Match: tr|A0A103Y893|A0A103Y893_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_017346 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.4e-12
Identity = 48/87 (55.17%), Postives = 57/87 (65.52%), Query Frame = 0


Query: 1  MGFHTLSRREFQALCKRNKILANITNVAMASALAALPSVEVIKEFLN---GERFAVPESS 60
          M FH+L+RRE Q+LCK NKI ANITNVAMA AL +L +VE I+EFLN    E   + E  
Sbjct: 1  MDFHSLTRRELQSLCKLNKIPANITNVAMADALQSLQTVEGIEEFLNVSQSETDGLVEPM 60

Query: 61 MKEEFVSSEIPQIALRTSTREKAVKGD 85
           K E  S + PQ   RTSTR+K   GD
Sbjct: 61 EKVEVSSPKAPQTRCRTSTRQKVKNGD 87

[Close]

BLAST of Cla97C03G061090 vs. TrEMBL
Match: tr|A0A2I4FB47|A0A2I4FB47_9ROSI (uncharacterized protein LOC108997174 isoform X2 OS=Juglans regia OX=51240 GN=LOC108997174 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.0e-12
Identity = 43/85 (50.59%), Postives = 59/85 (69.41%), Query Frame = 0


Query: 1  MGFHTLSRREFQALCKRNKILANITNVAMASALAALPSVEVIKEFLNGERFAVPESSMKE 60
          M FH+L+R+E QALCK+NKI ANITNVAMA AL AL +VE ++E LN     + +S+ + 
Sbjct: 1  MDFHSLARKELQALCKKNKIPANITNVAMADALQALQNVEGLEEILNPSNSVLSKSTGET 60

Query: 61 EFVSSEIPQIALRTSTREKAVKGDT 86
               +IP+ A RTSTR K +K ++
Sbjct: 61 VIGLPDIPRTACRTSTRRKPIKEES 85

[Close]

BLAST of Cla97C03G061090 vs. TAIR10
Match: AT5G17160.1 (unknown protein)

HSP 1 Score: 64.7 bits (156), Expect = 3.6e-11
Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 1  MGFHTLSRREFQALCKRNKILANITNVAMASALAALPSVEVIKEFLNGERFAVPESSMKE 60
          M FH+L RR+ Q LCKRNKI AN+TN+AMA AL +L  V+ + E++N    + P S    
Sbjct: 1  MDFHSLLRRDLQFLCKRNKIPANMTNIAMADALKSLEIVDGLDEYMNQSESSAPHSPTS- 60

Query: 61 EFVSSEIPQIALRTSTREKAVKGD 85
            V+   P  A RT+ R+   K +
Sbjct: 61 --VAKLPPSTATRTTRRKTTTKAE 81

[Close]

BLAST of Cla97C03G061090 vs. TAIR10
Match: AT3G03130.1 (unknown protein)

HSP 1 Score: 57.0 bits (136), Expect = 7.6e-09
Identity = 30/56 (53.57%), Postives = 37/56 (66.07%), Query Frame = 0


Query: 1  MGFHTLSRREFQALCKRNKILANITNVAMASALAALPSVEVIKEFLNGERFAVPES 57
          M FH+L RR+ Q  CKRNKI AN+TN+AMA AL  L  VE + EF++  R   P S
Sbjct: 1  MDFHSLPRRDLQFFCKRNKIPANMTNIAMADALRDLEIVEGMDEFMDPSRDQSPTS 56

[Close]

BLAST of Cla97C03G061090 vs. TAIR10
Match: AT1G76740.1 (unknown protein)

HSP 1 Score: 42.4 bits (98), Expect = 1.9e-04
Identity = 18/36 (50.00%), Postives = 27/36 (75.00%), Query Frame = 0


Query: 1  MGFHTLSRREFQALCKRNKILANITNVAMASALAAL 37
          M FH + R++ QALCK+N I AN+ N+ MA+ LA++
Sbjct: 1  MNFHGMKRKDLQALCKKNGIPANLKNIEMATRLASV 36

The following BLAST results are available for this feature:

BLAST of Cla97C03G061090 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49703.1	7.3e-26	77.27	hypothetical protein Csa_5G077220 [Cucumis sativus]	[more]
XP_008467303.1	2.4e-24	75.00	PREDICTED: probable beta-tubulin polyglutamylase [Cucumis melo]	[more]
KGN50365.1	2.6e-23	75.28	hypothetical protein Csa_5G169010 [Cucumis sativus]	[more]
XP_011656161.1	2.6e-23	75.28	PREDICTED: uncharacterized protein LOC105435645 [Cucumis sativus]	[more]
XP_023549683.1	4.4e-23	72.73	uncharacterized protein LOC111808107 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cla97C03G061090 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KJF8\|A0A0A0KJF8_CUCSA	4.8e-26	77.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G077220 PE=4 SV=1	[more]
tr\|A0A1S3CT90\|A0A1S3CT90_CUCME	1.6e-24	75.00	probable beta-tubulin polyglutamylase OS=Cucumis melo OX=3656 GN=LOC103504683 PE...	[more]
tr\|A0A0A0KKZ3\|A0A0A0KKZ3_CUCSA	1.7e-23	75.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G169010 PE=4 SV=1	[more]
tr\|A0A103Y893\|A0A103Y893_CYNCS	1.4e-12	55.17	Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_017...	[more]
tr\|A0A2I4FB47\|A0A2I4FB47_9ROSI	3.0e-12	50.59	uncharacterized protein LOC108997174 isoform X2 OS=Juglans regia OX=51240 GN=LOC...	[more]

BLAST of Cla97C03G061090 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C03G061090 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G17160.1	3.6e-11	42.86	unknown protein	[more]
AT3G03130.1	7.6e-09	53.57	unknown protein	[more]
AT1G76740.1	1.9e-04	50.00	unknown protein	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C03G061090.1	Cla97C03G061090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33621:SF2	T17B22.18 PROTEIN	coord: 1..47
None	No IPR available	PANTHER	PTHR33621	FAMILY NOT NAMED	coord: 1..47

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C03G061090	Cla009518	Watermelon (97103) v1	wmwmbB126

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C03G061090	Silver-seed gourd	carwmbB0560
Cla97C03G061090	Silver-seed gourd	carwmbB1021
Cla97C03G061090	Cucumber (Gy14) v2	cgybwmbB035
Cla97C03G061090	Cucumber (Gy14) v1	cgywmbB608
Cla97C03G061090	Cucurbita maxima (Rimu)	cmawmbB065
Cla97C03G061090	Cucurbita maxima (Rimu)	cmawmbB111
Cla97C03G061090	Cucurbita moschata (Rifu)	cmowmbB052
Cla97C03G061090	Cucurbita moschata (Rifu)	cmowmbB097
Cla97C03G061090	Wild cucumber (PI 183967)	cpiwmbB035
Cla97C03G061090	Cucumber (Chinese Long) v3	cucwmbB033
Cla97C03G061090	Cucumber (Chinese Long) v2	cuwmbB035
Cla97C03G061090	Bottle gourd (USVL1VR-Ls)	lsiwmbB362
Cla97C03G061090	Melon (DHL92) v3.6.1	medwmbB229
Cla97C03G061090	Melon (DHL92) v3.5.1	mewmbB244
Cla97C03G061090	Watermelon (Charleston Gray)	wcgwmbB186
Cla97C03G061090	Wax gourd	wgowmbB639