Cla97C03G055650 (gene) Watermelon (97103) v2

Overview
NameCla97C03G055650
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionHfr-2-like protein
LocationCla97Chr03 : 4617631 .. 4617981 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCTAGATGTGGAAACAAGCATTATCAAATCGGGTGTTCCTACAATTTTTGAAGATAAGCTTGCGATTGGATCAGAGTTTTCAAGAGAATATGAATGGGGAGAAGCAAAGAACTTGACGGAGAAGGTGGATGTTGTGCACAGGGTTCTAGTGCAGCCATTGAGGAAGGTTAAAGTGAATTTGGTGGCCACACAAGCTTCATACGATGTGCCATTCTCTTACACACAGAACGATACTCTCATCAATGGCCAAAACATTACACTGAACATGGAAGATGGCATTTACAATGGAGTCAATATTTACAACTTTAAGTTTGATCAAGAATCGTCGCAGTTGTGCGAATGTTGA

mRNA sequence

ATGAAGCTAGATGTGGAAACAAGCATTATCAAATCGGGTGTTCCTACAATTTTTGAAGATAAGCTTGCGATTGGATCAGAGTTTTCAAGAGAATATGAATGGGGAGAAGCAAAGAACTTGACGGAGAAGGTGGATGTTGTGCACAGGGTTCTAGTGCAGCCATTGAGGAAGGTTAAAGTGAATTTGGTGGCCACACAAGCTTCATACGATGTGCCATTCTCTTACACACAGAACGATACTCTCATCAATGGCCAAAACATTACACTGAACATGGAAGATGGCATTTACAATGGAGTCAATATTTACAACTTTAAGTTTGATCAAGAATCGTCGCAGTTGTGCGAATGTTGA

Coding sequence (CDS)

ATGAAGCTAGATGTGGAAACAAGCATTATCAAATCGGGTGTTCCTACAATTTTTGAAGATAAGCTTGCGATTGGATCAGAGTTTTCAAGAGAATATGAATGGGGAGAAGCAAAGAACTTGACGGAGAAGGTGGATGTTGTGCACAGGGTTCTAGTGCAGCCATTGAGGAAGGTTAAAGTGAATTTGGTGGCCACACAAGCTTCATACGATGTGCCATTCTCTTACACACAGAACGATACTCTCATCAATGGCCAAAACATTACACTGAACATGGAAGATGGCATTTACAATGGAGTCAATATTTACAACTTTAAGTTTGATCAAGAATCGTCGCAGTTGTGCGAATGTTGA

Protein sequence

MKLDVETSIIKSGVPTIFEDKLAIGSEFSREYEWGEAKNLTEKVDVVHRVLVQPLRKVKVNLVATQASYDVPFSYTQNDTLINGQNITLNMEDGIYNGVNIYNFKFDQESSQLCEC
Homology
[Close]
BLAST of Cla97C03G055650 vs. NCBI nr
Match: XP_004140685.1 (PREDICTED: uncharacterized protein LOC101213433 [Cucumis sativus] >KGN46323.1 hypothetical protein Csa_6G084570 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 2.6e-38
Identity = 83/109 (76.15%), Postives = 94/109 (86.24%), Query Frame = 0 

Query: 2   KLDVETSIIKSGVPTIFEDKLAIGSE-FSREYEWGEAKNLTEKVDVVHRVLVQPLRKVKV 61
           KLDVETS+IKS VP IFE+ LAIG E FS EY+WGE  NLT+KVD VH+VLVQP   V+V
Sbjct: 363 KLDVETSVIKSSVPIIFEETLAIGPELFSGEYDWGEDTNLTKKVDTVHKVLVQPCSNVRV 422

Query: 62  NLVATQASYDVPFSYTQNDTLINGQNITLNMEDGIYNGVNIYNFKFDQE 110
           NLVATQASYDVPFSYTQNDTLI+G+ I+LNMEDGIY GVN+YNFKF+ E
Sbjct: 423 NLVATQASYDVPFSYTQNDTLISGEKISLNMEDGIYKGVNLYNFKFETE 471

[Close]
BLAST of Cla97C03G055650 vs. NCBI nr
Match: XP_008460024.1 (PREDICTED: uncharacterized protein LOC103498962 [Cucumis melo])

HSP 1 Score: 153.3 bits (386), Expect = 5.1e-34
Identity = 79/118 (66.95%), Postives = 94/118 (79.66%), Query Frame = 0 

Query: 1   MKLDVETSIIKSGVPTIFEDKLAIGSE-FSREYEWGEAKNLTEKVDVVHRVLVQPLRKVK 60
           +KL+VET +I+S +P IFE+ LAIG E FS EY+WGE KNLT+KV+ VH+VLVQP  KV+
Sbjct: 363 VKLNVETCVIESSIPIIFEETLAIGPESFSGEYDWGEDKNLTKKVETVHKVLVQPCSKVR 422

Query: 61  VNLVATQASYDVPFSYTQNDTLINGQNI-TLNMEDGIYNGVNIYNFKFDQESSQLCEC 117
           VNLVATQASYDVPFSYTQNDTLI+   I T  MEDGIY GVN+YNFKF++     C C
Sbjct: 423 VNLVATQASYDVPFSYTQNDTLISSNLITTYKMEDGIYKGVNLYNFKFEETD---CGC 477

[Close]
BLAST of Cla97C03G055650 vs. NCBI nr
Match: XP_020412216.1 (natterin-like protein [Prunus persica] >ONI21764.1 hypothetical protein PRUPE_2G087400 [Prunus persica])

HSP 1 Score: 124.4 bits (311), Expect = 2.5e-25
Identity = 56/115 (48.70%), Postives = 83/115 (72.17%), Query Frame = 0 

Query: 1   MKLDVETSIIKSGVPTIFEDKLAIGSEFSREYEWGEAKNLTEKVDVVHRVLVQPLRKVKV 60
           MKL +ET  +++GVP I E ++ I +EF+ E++WG+      ++  VH V+V P+ +VKV
Sbjct: 360 MKLGIETK-VQTGVPLIAEGQIEISAEFATEFQWGKTNTSESELGTVHEVVVPPMSRVKV 419

Query: 61  NLVATQASYDVPFSYTQNDTLINGQNITLNMEDGIYNGVNIYNFKFDQESSQLCE 116
           +L+AT+ S DVPFSYTQ DTLI+G  +T +M+DG+Y GVN YNFKF+ +   LC+
Sbjct: 420 SLMATRGSCDVPFSYTQRDTLIDGTTVTQDMDDGVYTGVNSYNFKFETKQESLCD 473

[Close]
BLAST of Cla97C03G055650 vs. NCBI nr
Match: XP_022953936.1 (uncharacterized protein LOC111456344 [Cucurbita moschata])

HSP 1 Score: 119.8 bits (299), Expect = 6.2e-24
Identity = 56/113 (49.56%), Postives = 84/113 (74.34%), Query Frame = 0 

Query: 1   MKLDVETSIIKSGVPTIFEDKLAIGSEFSREYEWGEAKNLTEKVDVVHRVLVQPLRKVKV 60
           MKL V+T+ I++G+P IFE K+ I +EFS +Y+WGE K  ++ V+  ++V V P+  V V
Sbjct: 354 MKLGVKTT-IETGIPFIFEGKVEISAEFSGQYQWGETKTTSKAVETSYQVTVPPMTTVIV 413

Query: 61  NLVATQASYDVPFSYTQNDTLINGQNITLNMEDGIYNGVNIYNFKFDQESSQL 114
           +L+AT+ + DVP+SYTQ DTLING+  T  M+DG+Y GVN YNFK++ +S+ +
Sbjct: 414 SLLATKGTSDVPYSYTQRDTLINGETKTYQMDDGVYKGVNSYNFKYETKSTPI 465

[Close]
BLAST of Cla97C03G055650 vs. NCBI nr
Match: PSS21691.1 (Natterin-3 like [Actinidia chinensis var. chinensis])

HSP 1 Score: 117.5 bits (293), Expect = 3.1e-23
Identity = 55/113 (48.67%), Postives = 83/113 (73.45%), Query Frame = 0 

Query: 1   MKLDVETSIIKSGVPTIFEDKLAIGSEFSREYEWGEAKNLTEKVDVVHRVLVQPLRKVKV 60
           +KL V+TS  ++G+P I E K+ I +EFS  Y+WGE ++ T  ++ V++V V P+  VKV
Sbjct: 354 LKLGVKTS-FQTGIPLIAEGKVEISAEFSGAYQWGETQSSTTVMETVYKVTVPPMTMVKV 413

Query: 61  NLVATQASYDVPFSYTQNDTLINGQNITLNMEDGIYNGVNIYNFKFDQESSQL 114
           +L+AT+ S DVPFSY+Q DTLINGQ  T +M+DG+Y G+N +NFK++ +  +L
Sbjct: 414 SLLATKGSCDVPFSYSQRDTLINGQQTTHHMDDGVYTGMNCFNFKYETKQEKL 465

[Close]
BLAST of Cla97C03G055650 vs. TrEMBL
Match: tr|A0A0A0KA14|A0A0A0KA14_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G084570 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.7e-38
Identity = 83/109 (76.15%), Postives = 94/109 (86.24%), Query Frame = 0 

Query: 2   KLDVETSIIKSGVPTIFEDKLAIGSE-FSREYEWGEAKNLTEKVDVVHRVLVQPLRKVKV 61
           KLDVETS+IKS VP IFE+ LAIG E FS EY+WGE  NLT+KVD VH+VLVQP   V+V
Sbjct: 363 KLDVETSVIKSSVPIIFEETLAIGPELFSGEYDWGEDTNLTKKVDTVHKVLVQPCSNVRV 422

Query: 62  NLVATQASYDVPFSYTQNDTLINGQNITLNMEDGIYNGVNIYNFKFDQE 110
           NLVATQASYDVPFSYTQNDTLI+G+ I+LNMEDGIY GVN+YNFKF+ E
Sbjct: 423 NLVATQASYDVPFSYTQNDTLISGEKISLNMEDGIYKGVNLYNFKFETE 471

[Close]
BLAST of Cla97C03G055650 vs. TrEMBL
Match: tr|A0A1S3CB39|A0A1S3CB39_CUCME (uncharacterized protein LOC103498962 OS=Cucumis melo OX=3656 GN=LOC103498962 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 3.4e-34
Identity = 79/118 (66.95%), Postives = 94/118 (79.66%), Query Frame = 0 

Query: 1   MKLDVETSIIKSGVPTIFEDKLAIGSE-FSREYEWGEAKNLTEKVDVVHRVLVQPLRKVK 60
           +KL+VET +I+S +P IFE+ LAIG E FS EY+WGE KNLT+KV+ VH+VLVQP  KV+
Sbjct: 363 VKLNVETCVIESSIPIIFEETLAIGPESFSGEYDWGEDKNLTKKVETVHKVLVQPCSKVR 422

Query: 61  VNLVATQASYDVPFSYTQNDTLINGQNI-TLNMEDGIYNGVNIYNFKFDQESSQLCEC 117
           VNLVATQASYDVPFSYTQNDTLI+   I T  MEDGIY GVN+YNFKF++     C C
Sbjct: 423 VNLVATQASYDVPFSYTQNDTLISSNLITTYKMEDGIYKGVNLYNFKFEETD---CGC 477

[Close]
BLAST of Cla97C03G055650 vs. TrEMBL
Match: tr|A0A251QD66|A0A251QD66_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G087400 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.7e-25
Identity = 56/115 (48.70%), Postives = 83/115 (72.17%), Query Frame = 0 

Query: 1   MKLDVETSIIKSGVPTIFEDKLAIGSEFSREYEWGEAKNLTEKVDVVHRVLVQPLRKVKV 60
           MKL +ET  +++GVP I E ++ I +EF+ E++WG+      ++  VH V+V P+ +VKV
Sbjct: 360 MKLGIETK-VQTGVPLIAEGQIEISAEFATEFQWGKTNTSESELGTVHEVVVPPMSRVKV 419

Query: 61  NLVATQASYDVPFSYTQNDTLINGQNITLNMEDGIYNGVNIYNFKFDQESSQLCE 116
           +L+AT+ S DVPFSYTQ DTLI+G  +T +M+DG+Y GVN YNFKF+ +   LC+
Sbjct: 420 SLMATRGSCDVPFSYTQRDTLIDGTTVTQDMDDGVYTGVNSYNFKFETKQESLCD 473

[Close]
BLAST of Cla97C03G055650 vs. TrEMBL
Match: tr|A0A2R6R6R8|A0A2R6R6R8_ACTCH (Natterin-3 like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc10740 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.0e-23
Identity = 55/113 (48.67%), Postives = 83/113 (73.45%), Query Frame = 0 

Query: 1   MKLDVETSIIKSGVPTIFEDKLAIGSEFSREYEWGEAKNLTEKVDVVHRVLVQPLRKVKV 60
           +KL V+TS  ++G+P I E K+ I +EFS  Y+WGE ++ T  ++ V++V V P+  VKV
Sbjct: 354 LKLGVKTS-FQTGIPLIAEGKVEISAEFSGAYQWGETQSSTTVMETVYKVTVPPMTMVKV 413

Query: 61  NLVATQASYDVPFSYTQNDTLINGQNITLNMEDGIYNGVNIYNFKFDQESSQL 114
           +L+AT+ S DVPFSY+Q DTLINGQ  T +M+DG+Y G+N +NFK++ +  +L
Sbjct: 414 SLLATKGSCDVPFSYSQRDTLINGQQTTHHMDDGVYTGMNCFNFKYETKQEKL 465

[Close]
BLAST of Cla97C03G055650 vs. TrEMBL
Match: tr|F6HZZ7|F6HZZ7_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_07s0005g06110 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.7e-22
Identity = 55/113 (48.67%), Postives = 81/113 (71.68%), Query Frame = 0 

Query: 1   MKLDVETSIIKSGVPTIFEDKLAIGSEFSREYEWGEAKNLTEKVDVVHRVLVQPLRKVKV 60
           +KL V+ + ++SGVP I + KL I SEFS  YEWGE +++T  ++ V+ V V  + KV V
Sbjct: 354 LKLGVKMT-MESGVPFIADGKLEISSEFSGTYEWGETESVTTAMETVYNVTVPAMTKVTV 413

Query: 61  NLVATQASYDVPFSYTQNDTLINGQNITLNMEDGIYNGVNIYNFKFDQESSQL 114
           +++ATQ S DVPFSYTQ+DTL +G+N+  NM+DG+Y GVN +N K+  +  +L
Sbjct: 414 SMIATQGSCDVPFSYTQHDTLTDGKNVVYNMDDGVYVGVNCFNVKYHTKEEKL 465

The following BLAST results are available for this feature:
BLAST of Cla97C03G055650 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004140685.12.6e-3876.15PREDICTED: uncharacterized protein LOC101213433 [Cucumis sativus] >KGN46323.1 hy... [more]
XP_008460024.15.1e-3466.95PREDICTED: uncharacterized protein LOC103498962 [Cucumis melo][more]
XP_020412216.12.5e-2548.70natterin-like protein [Prunus persica] >ONI21764.1 hypothetical protein PRUPE_2G... [more]
XP_022953936.16.2e-2449.56uncharacterized protein LOC111456344 [Cucurbita moschata][more]
PSS21691.13.1e-2348.67Natterin-3 like [Actinidia chinensis var. chinensis][more]
BLAST of Cla97C03G055650 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KA14|A0A0A0KA14_CUCSA1.7e-3876.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G084570 PE=4 SV=1[more]
tr|A0A1S3CB39|A0A1S3CB39_CUCME3.4e-3466.95uncharacterized protein LOC103498962 OS=Cucumis melo OX=3656 GN=LOC103498962 PE=... [more]
tr|A0A251QD66|A0A251QD66_PRUPE1.7e-2548.70Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G087400 PE=4 SV=1[more]
tr|A0A2R6R6R8|A0A2R6R6R8_ACTCH2.0e-2348.67Natterin-3 like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc107... [more]
tr|F6HZZ7|F6HZZ7_VITVI1.7e-2248.67Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_07s0005g06110 PE=4 SV=... [more]
BLAST of Cla97C03G055650 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C03G055650 vs. TAIR10
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C03G055650.1Cla97C03G055650.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:2.170.15.10coord: 1..111
e-value: 2.1E-23
score: 84.6
NoneNo IPR availablePANTHERPTHR39244FAMILY NOT NAMEDcoord: 9..110
NoneNo IPR availableSUPERFAMILYSSF56973Aerolisin/ETX pore-forming domaincoord: 13..109

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C03G055650Silver-seed gourdcarwmbB0517
Cla97C03G055650Silver-seed gourdcarwmbB1060
Cla97C03G055650Silver-seed gourdcarwmbB1061
Cla97C03G055650Cucumber (Gy14) v2cgybwmbB032
Cla97C03G055650Cucumber (Gy14) v1cgywmbB092
Cla97C03G055650Cucurbita maxima (Rimu)cmawmbB227
Cla97C03G055650Cucurbita maxima (Rimu)cmawmbB228
Cla97C03G055650Cucurbita maxima (Rimu)cmawmbB417
Cla97C03G055650Cucurbita moschata (Rifu)cmowmbB211
Cla97C03G055650Cucurbita moschata (Rifu)cmowmbB212
Cla97C03G055650Cucurbita moschata (Rifu)cmowmbB394
Cla97C03G055650Wild cucumber (PI 183967)cpiwmbB032
Cla97C03G055650Wild cucumber (PI 183967)cpiwmbB041
Cla97C03G055650Cucumber (Chinese Long) v3cucwmbB030
Cla97C03G055650Cucumber (Chinese Long) v3cucwmbB040
Cla97C03G055650Cucumber (Chinese Long) v2cuwmbB032
Cla97C03G055650Bottle gourd (USVL1VR-Ls)lsiwmbB176
Cla97C03G055650Melon (DHL92) v3.6.1medwmbB144
Cla97C03G055650Melon (DHL92) v3.6.1medwmbB145
Cla97C03G055650Melon (DHL92) v3.5.1mewmbB156
Cla97C03G055650Melon (DHL92) v3.5.1mewmbB155
Cla97C03G055650Melon (DHL92) v3.5.1mewmbB158
Cla97C03G055650Watermelon (Charleston Gray)wcgwmbB186
Cla97C03G055650Watermelon (97103) v1wmwmbB124
Cla97C03G055650Wax gourdwgowmbB473