Cla97C03G054320 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C03G054320
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Invertase inhibitor
Location	Cla97Chr03 : 3547743 .. 3548348 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTCTTCCCCTTCATTCCTCGTTGCTTTTACTCTTCATTTTTTGTCAATTTTCAACCCTTTTCTGTTAGCCCATGCAAATCAAAATACAAACGCCACCGTCAATAATTTTGCTCATGGGATTTGCAACAGGCTTATTCAATATAACGATCTATACAAAGTGTGCATTCCCGAGATTGATTCTGACCCTCGTGAAGATTTGAAGTCAGATTTGACAGGTCTTCTAATTATATTCGTGAATCATAGCATCAGCAATTTCAACGACAATATTGTATTTCTTAAGAAGGAGATAAATTCAGGGAAGGTGAATGGTGATACAAAAGACATAATGTCCATGTGTTTGGAAAACTTTGAAACAGGTATCAGTGCTCTGCAAGAGTCTTTGCACATACTACTAACACAAACAGGGATAGATGTGTATCAATTGTCGATGATCAATGTTGAGAATTATGTGAGTGAGTGTGTAGAAGATTTTGAAGGAAATCCTATCCCTAACCCACCTGAGTGGCAATCTCGTTATAATTCTTCATGGAATTTATTGGGTCTCATTTTAGTAATGTCTAATCTCATTAAATGTAATCGTGTAATTTCGTGTATCCCTTGA

mRNA sequence

ATGTGTTCTTCCCCTTCATTCCTCGTTGCTTTTACTCTTCATTTTTTGTCAATTTTCAACCCTTTTCTGTTAGCCCATGCAAATCAAAATACAAACGCCACCGTCAATAATTTTGCTCATGGGATTTGCAACAGGCTTATTCAATATAACGATCTATACAAAGTGTGCATTCCCGAGATTGATTCTGACCCTCGTGAAGATTTGAAGTCAGATTTGACAGGTCTTCTAATTATATTCGTGAATCATAGCATCAGCAATTTCAACGACAATATTGTATTTCTTAAGAAGGAGATAAATTCAGGGAAGGTGAATGGTGATACAAAAGACATAATGTCCATGTGTTTGGAAAACTTTGAAACAGGTATCAGTGCTCTGCAAGAGTCTTTGCACATACTACTAACACAAACAGGGATAGATGTGTATCAATTGTCGATGATCAATGTTGAGAATTATGTGAGTGAGTGTGTAGAAGATTTTGAAGGAAATCCTATCCCTAACCCACCTGAGTGGCAATCTCGTTATAATTCTTCATGGAATTTATTGGGTCTCATTTTAGTAATGTCTAATCTCATTAAATGTAATCGTGTAATTTCGTGTATCCCTTGA

Coding sequence (CDS)

ATGTGTTCTTCCCCTTCATTCCTCGTTGCTTTTACTCTTCATTTTTTGTCAATTTTCAACCCTTTTCTGTTAGCCCATGCAAATCAAAATACAAACGCCACCGTCAATAATTTTGCTCATGGGATTTGCAACAGGCTTATTCAATATAACGATCTATACAAAGTGTGCATTCCCGAGATTGATTCTGACCCTCGTGAAGATTTGAAGTCAGATTTGACAGGTCTTCTAATTATATTCGTGAATCATAGCATCAGCAATTTCAACGACAATATTGTATTTCTTAAGAAGGAGATAAATTCAGGGAAGGTGAATGGTGATACAAAAGACATAATGTCCATGTGTTTGGAAAACTTTGAAACAGGTATCAGTGCTCTGCAAGAGTCTTTGCACATACTACTAACACAAACAGGGATAGATGTGTATCAATTGTCGATGATCAATGTTGAGAATTATGTGAGTGAGTGTGTAGAAGATTTTGAAGGAAATCCTATCCCTAACCCACCTGAGTGGCAATCTCGTTATAATTCTTCATGGAATTTATTGGGTCTCATTTTAGTAATGTCTAATCTCATTAAATGTAATCGTGTAATTTCGTGTATCCCTTGA

Protein sequence

MCSSPSFLVAFTLHFLSIFNPFLLAHANQNTNATVNNFAHGICNRLIQYNDLYKVCIPEIDSDPREDLKSDLTGLLIIFVNHSISNFNDNIVFLKKEINSGKVNGDTKDIMSMCLENFETGISALQESLHILLTQTGIDVYQLSMINVENYVSECVEDFEGNPIPNPPEWQSRYNSSWNLLGLILVMSNLIKCNRVISCIP

Homology

[Close]

BLAST of Cla97C03G054320 vs. NCBI nr
Match: XP_023511468.1 (uncharacterized protein LOC111776286 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 213.0 bits (541), Expect = 9.3e-52
Identity = 103/173 (59.54%), Postives = 131/173 (75.72%), Query Frame = 0


Query: 29  QNTNATVNNFAHGICNRLIQYNDLYKVCIPEIDSDPREDLKSDLTGLLIIFVNHSISNFN 88
           +   +T + F H  CNR  QYN+LYK+CIPEID DPREDLKS+LTG L IFVNH+I+NFN
Sbjct: 3   EEDKSTDDTFVHDTCNR-FQYNELYKLCIPEIDLDPREDLKSNLTGFLTIFVNHTINNFN 62

Query: 89  DNIVFLKKEINSGKVNGDTKDIMSMCLENFETGISALQESLHILLTQTGIDVYQLSMINV 148
           DN++FL++EI SGK++ +TK +   C E+F  G + LQES+HILLTQ G +VY L  ++V
Sbjct: 63  DNLIFLQREIKSGKLDAETKLMYDKCSESFGMGYTKLQESMHILLTQPGTNVYDLPTMSV 122

Query: 149 ENYVSECVEDFEGNPIPNPPEWQSRYNSSWNLLGLILVMSNLIKCNRVISCIP 202
           +  +S C +DFE +PI  PPEWQSRY +SWNL+ LIL  SNLIKCNR  SCIP
Sbjct: 123 DKRISVCFDDFEDDPI--PPEWQSRYKTSWNLVSLILGTSNLIKCNREASCIP 172

[Close]

BLAST of Cla97C03G054320 vs. NCBI nr
Match: XP_022137307.1 (uncharacterized protein LOC111008804 [Momordica charantia])

HSP 1 Score: 117.1 bits (292), Expect = 7.0e-23
Identity = 62/169 (36.69%), Postives = 98/169 (57.99%), Query Frame = 0


Query: 33  ATVNNFAHGICNRLIQYNDLYKVCIPEIDSDPREDLKSDLTGLLIIFVNHSISNFNDNIV 92
           +  N+F +  CN+  +  +  KVCI  IDSDP +DLK +L+GLL IF+NHSI N  DN +
Sbjct: 8   SVANSFVNNTCNKFEE--EFIKVCIDVIDSDPHQDLKLNLSGLLAIFINHSIDNATDNHL 67

Query: 93  FLKKEINSGKVNGDTKDIMSMCLENFETGISALQESLHILLTQTGIDVYQLSMINVENYV 152
           +L +++    ++ D +   ++C+E +E G+  L+ SL  LL     D+  L + +  + +
Sbjct: 68  YLMEQLKRSDLDKDIRYTFNVCVEQYERGLDILKSSLEALLKNDKDDL-GLILSDAFDKI 127

Query: 153 SECVEDFEGNPIPNPPEWQSRYNSSWNLLGLILVMSNLIKCNRVISCIP 202
             C +DFE    P PP W + Y     LL L +  +NLI+C +V +CIP
Sbjct: 128 VACEDDFEST--PEPPSWLAHYLPLRKLLALSMGTANLIQCKKVAACIP 171

[Close]

BLAST of Cla97C03G054320 vs. NCBI nr
Match: XP_023511663.1 (probable pectinesterase/pectinesterase inhibitor 41 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 68.6 bits (166), Expect = 2.8e-08
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 0


Query: 1  MCSSPSFLVAFTLHFLSIFNPFLLAHANQNTNATVNNFAHGICNRLIQYNDLYKVCIPEI 60
          M SS   L   TL  LSIFNP ++  A +N+++  + F    CNR  QY++LYK+C   I
Sbjct: 4  MSSSLPLLAVSTLLLLSIFNPSMMVMAEENSSSN-DKFVRDTCNR-FQYDELYKLCFSVI 63

Query: 61 DSDPREDLKSDLTGL 76
          DSDPREDLKS+LT L
Sbjct: 64 DSDPREDLKSNLTEL 76

The following BLAST results are available for this feature:

BLAST of Cla97C03G054320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023511468.1	9.3e-52	59.54	uncharacterized protein LOC111776286 [Cucurbita pepo subsp. pepo]	[more]
XP_022137307.1	7.0e-23	36.69	uncharacterized protein LOC111008804 [Momordica charantia]	[more]
XP_023511663.1	2.8e-08	50.67	probable pectinesterase/pectinesterase inhibitor 41 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cla97C03G054320 vs. TrEMBL


Match Name	E-value	Identity	Description

BLAST of Cla97C03G054320 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C03G054320 vs. TAIR10


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0004857	enzyme inhibitor activity

Vocabulary: **INTERPRO**
Term	Definition
IPR035513	Invertase/methylesterase_inhib
IPR006501	Pectinesterase_inhib_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043086	negative regulation of catalytic activity
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004857	enzyme inhibitor activity
molecular_function	GO:0046910	pectinesterase inhibitor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C03G054320.1	Cla97C03G054320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006501	Pectinesterase inhibitor domain	SMART	SM00856	PMEI_2	coord: 34..187 e-value: 0.0036 score: 22.5
IPR006501	Pectinesterase inhibitor domain	PFAM	PF04043	PMEI	coord: 38..162 e-value: 2.4E-6 score: 27.9
IPR006501	Pectinesterase inhibitor domain	TIGRFAM	TIGR01614	TIGR01614	coord: 15..189 e-value: 4.0E-13 score: 47.1
IPR035513	Invertase/pectin methylesterase inhibitor domain superfamily	GENE3D	G3DSA:1.20.140.40		coord: 36..193 e-value: 3.3E-11 score: 45.2
IPR035513	Invertase/pectin methylesterase inhibitor domain superfamily	SUPERFAMILY	SSF101148	Plant invertase/pectin methylesterase inhibitor	coord: 40..191
None	No IPR available	PANTHER	PTHR31080	FAMILY NOT NAMED	coord: 31..190
None	No IPR available	PANTHER	PTHR31080:SF1	CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 2-RELATED	coord: 31..190

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C03G054320	MELO3C035537.2	Melon (DHL92) v3.6.1	medwmbB145

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C03G054320	Watermelon (97103) v2	wmbwmbB118
Cla97C03G054320	Silver-seed gourd	carwmbB0517
Cla97C03G054320	Silver-seed gourd	carwmbB1060
Cla97C03G054320	Cucumber (Gy14) v2	cgybwmbB032
Cla97C03G054320	Cucurbita maxima (Rimu)	cmawmbB414
Cla97C03G054320	Cucumber (Gy14) v1	cgywmbB671
Cla97C03G054320	Cucurbita maxima (Rimu)	cmawmbB068
Cla97C03G054320	Cucurbita maxima (Rimu)	cmawmbB227
Cla97C03G054320	Cucurbita moschata (Rifu)	cmowmbB055
Cla97C03G054320	Cucurbita moschata (Rifu)	cmowmbB211
Cla97C03G054320	Cucurbita moschata (Rifu)	cmowmbB394
Cla97C03G054320	Wild cucumber (PI 183967)	cpiwmbB032
Cla97C03G054320	Cucumber (Chinese Long) v3	cucwmbB030
Cla97C03G054320	Cucumber (Chinese Long) v2	cuwmbB032
Cla97C03G054320	Bottle gourd (USVL1VR-Ls)	lsiwmbB176
Cla97C03G054320	Melon (DHL92) v3.5.1	mewmbB156
Cla97C03G054320	Watermelon (Charleston Gray)	wcgwmbB186
Cla97C03G054320	Watermelon (Charleston Gray)	wcgwmbB262
Cla97C03G054320	Watermelon (97103) v1	wmwmbB124
Cla97C03G054320	Wax gourd	wgowmbB475