Cla97C03G053910 (gene) Watermelon (97103) v2

Overview
NameCla97C03G053910
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionCytochrome b6
LocationCla97Chr03 : 3134121 .. 3134629 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGATTTTAGAGCAGCTATGAAAATTCTAATATGGCTTGGGATTTTCAAGAAATATTATGATTTTAGTAGGAACCATGGTTTTAGAACCATTTGAGATATTTTATTACTATTTGAGAATTTGAAATGTTTTACCATGTTGAGAAATGAAAATGATATTTTACAAGCTTGAAAAATTATTGAGCTTTGTGTGAAATCTTGTTTCAGAGAGAAAGAGCATGAACTAGAATAGTTGAGAATAAAGAGTTCTATGTTGGAAGTTGCTTTGGTTATTCTTTACCTTGGGACCAAATTGGTTATTGGGCAGTCAAAATTGTAACAGGTGTACCGGAAGCTATTCTAGTAATAGAGTCACCTTTGGTAGAGTTATTACGCGGAAGTGTTAGTGTGGGACAATCTACCTTGACTCATTTTTATAGTTTACACACTTTTGTATTACCTCTTCTTAGTGCCGTATTTATGTTAATGCACTTCCCAATGATACGAATTTCGTCTCGTACGGCTTAA

mRNA sequence

ATGTATGATTTTAGAGCAGCTATGAAAATTCTAATATGGCTTGGGATTTTCAAGAAATATTATGATTTTAGTAGGAACCATGAGTTCTATGTTGGAAGTTGCTTTGGTTATTCTTTACCTTGGGACCAAATTGGTTATTGGGCAGTCAAAATTGTAACAGGTGTACCGGAAGCTATTCTAGTAATAGAGTCACCTTTGGTAGAGTTATTACGCGGAAGTGTTAGTGTGGGACAATCTACCTTGACTCATTTTTATAGTTTACACACTTTTGTATTACCTCTTCTTAGTGCCGTATTTATGTTAATGCACTTCCCAATGATACGAATTTCGTCTCGTACGGCTTAA

Coding sequence (CDS)

ATGTATGATTTTAGAGCAGCTATGAAAATTCTAATATGGCTTGGGATTTTCAAGAAATATTATGATTTTAGTAGGAACCATGAGTTCTATGTTGGAAGTTGCTTTGGTTATTCTTTACCTTGGGACCAAATTGGTTATTGGGCAGTCAAAATTGTAACAGGTGTACCGGAAGCTATTCTAGTAATAGAGTCACCTTTGGTAGAGTTATTACGCGGAAGTGTTAGTGTGGGACAATCTACCTTGACTCATTTTTATAGTTTACACACTTTTGTATTACCTCTTCTTAGTGCCGTATTTATGTTAATGCACTTCCCAATGATACGAATTTCGTCTCGTACGGCTTAA

Protein sequence

MYDFRAAMKILIWLGIFKKYYDFSRNHEFYVGSCFGYSLPWDQIGYWAVKIVTGVPEAILVIESPLVELLRGSVSVGQSTLTHFYSLHTFVLPLLSAVFMLMHFPMIRISSRTA
Homology
[Close]
BLAST of Cla97C03G053910 vs. NCBI nr
Match: AWI70333.1 (cytochrome b6 (chloroplast) [Plumeria cubensis])

HSP 1 Score: 135.6 bits (340), Expect = 1.1e-28
Identity = 68/73 (93.15%), Postives = 69/73 (94.52%), Query Frame = 0 

Query: 36  GYSLPWDQIGYWAVKIVTGVPEAILVIESPLVELLRGSVSVGQSTLTHFYSLHTFVLPLL 95
           GYSLPWDQIGYWAVKIVTGVPEAI VI SPLVELLRGS SVGQSTLT FYSLHTFVLPLL
Sbjct: 135 GYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLL 194

Query: 96  SAVFMLMHFPMIR 109
           SA+FMLMHFPMIR
Sbjct: 195 SAIFMLMHFPMIR 207

[Close]
BLAST of Cla97C03G053910 vs. NCBI nr
Match: YP_665588.1 (cytochrome b6 [Populus alba] >YP_001109532.1 cytochrome b6 [Populus trichocarpa] >YP_009054165.1 cytochrome b6 (chloroplast) [Populus balsamifera] >YP_009054084.1 cytochrome b6 (chloroplast) [Populus fremontii] >YP_009154440.1 cytochrome b6 (chloroplast) [Populus tremula] >YP_009182679.1 cytochrome b6 (chloroplast) [Populus tremula x Populus alba] >YP_009307695.1 cytochrome b6 (chloroplast) [Populus qiongdaoensis] >YP_009331974.1 cytochrome b6 (chloroplast) [Populus adenopoda] >YP_009335981.1 cytochrome b6 (chloroplast) [Populus davidiana] >YP_009346716.1 cytochrome b6 (chloroplast) [Populus rotundifolia] >YP_009434053.1 cytochrome b6 (chloroplast) [Populus lasiocarpa] >Q14FC7.1 RecName: Full=Cytochrome b6 >BAE97235.1 cytochrome b6 (chloroplast) [Populus alba] >ABO36736.1 cytochrome b6 (chloroplast) [Populus trichocarpa] >AID60418.1 cytochrome b6 (chloroplast) [Populus fremontii] >AID60499.1 cytochrome b6 (chloroplast) [Populus balsamifera] >AJV86781.1 cytochrome b6 (chloroplast) [Populus tremula] >AKF33971.1 cytochrome b6 (chloroplast) [Populus yunnanensis] >ALH07361.1 cytochrome b6 (chloroplast) [Populus tremula x Populus alba] >AOR82529.1 cytochrome b6 (chloroplast) [Populus qiongdaoensis] >AOS86477.1 cytochrome b6 (chloroplast) [Populus lasiocarpa] >APH07592.1 cytochrome b6 (chloroplast) [Populus adenopoda] >APO09027.1 cytochrome b6 (chloroplast) [Populus nigra] >APO15416.1 cytochrome b6 (chloroplast) [Populus davidiana] >APR73124.1 cytochrome b6 (chloroplast) [Populus rotundifolia] >AVK41956.1 cytochrome b6 (chloroplast) [Populus wilsonii])

HSP 1 Score: 134.8 bits (338), Expect = 1.8e-28
Identity = 68/73 (93.15%), Postives = 69/73 (94.52%), Query Frame = 0 

Query: 36  GYSLPWDQIGYWAVKIVTGVPEAILVIESPLVELLRGSVSVGQSTLTHFYSLHTFVLPLL 95
           GYSLPWDQIGYWAVKIVTGVPEAI VI SPLVELLRGS SVGQSTLT FYSLHTFVLPLL
Sbjct: 135 GYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLL 194

Query: 96  SAVFMLMHFPMIR 109
           +AVFMLMHFPMIR
Sbjct: 195 TAVFMLMHFPMIR 207

[Close]
BLAST of Cla97C03G053910 vs. NCBI nr
Match: YP_003097604.1 (cytochrome b6 (chloroplast) [Dendrocalamus latiflorus] >YP_009452138.1 cytochrome b6 (chloroplast) [Rhipidocladum pittieri] >ACT99948.1 cytochrome b6 (chloroplast) [Dendrocalamus latiflorus] >ARQ28453.1 cytochrome b6 (chloroplast) [Rhipidocladum pittieri])

HSP 1 Score: 134.8 bits (338), Expect = 1.8e-28
Identity = 68/73 (93.15%), Postives = 69/73 (94.52%), Query Frame = 0 

Query: 36  GYSLPWDQIGYWAVKIVTGVPEAILVIESPLVELLRGSVSVGQSTLTHFYSLHTFVLPLL 95
           GYSLPWDQIGYWAVKIVTGVPEAI VI SPLVELLRGS SVGQSTLT FYSLHTFVLPLL
Sbjct: 152 GYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLL 211

Query: 96  SAVFMLMHFPMIR 109
           +AVFMLMHFPMIR
Sbjct: 212 TAVFMLMHFPMIR 224

[Close]
BLAST of Cla97C03G053910 vs. NCBI nr
Match: ACT67274.1 (cytochrome b6, partial (chloroplast) [Joinvillea plicata] >AEJ10355.1 cytochrome b6, partial (plastid) [Abolboda macrostachya] >AEJ10369.1 cytochrome b6, partial (plastid) [Eleusine coracana] >AEJ10370.1 cytochrome b6, partial (plastid) [Flagellaria indica] >AEJ10394.1 cytochrome b6, partial (plastid) [Streptochaeta angustifolia])

HSP 1 Score: 134.8 bits (338), Expect = 1.8e-28
Identity = 68/73 (93.15%), Postives = 69/73 (94.52%), Query Frame = 0 

Query: 36  GYSLPWDQIGYWAVKIVTGVPEAILVIESPLVELLRGSVSVGQSTLTHFYSLHTFVLPLL 95
           GYSLPWDQIGYWAVKIVTGVPEAI VI SPLVELLRGS SVGQSTLT FYSLHTFVLPLL
Sbjct: 135 GYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLL 194

Query: 96  SAVFMLMHFPMIR 109
           +AVFMLMHFPMIR
Sbjct: 195 TAVFMLMHFPMIR 207

[Close]
BLAST of Cla97C03G053910 vs. NCBI nr
Match: ADN86073.1 (cytochrome b6, partial (chloroplast) [Chasmanthium latifolium])

HSP 1 Score: 134.8 bits (338), Expect = 1.8e-28
Identity = 68/73 (93.15%), Postives = 69/73 (94.52%), Query Frame = 0 

Query: 36  GYSLPWDQIGYWAVKIVTGVPEAILVIESPLVELLRGSVSVGQSTLTHFYSLHTFVLPLL 95
           GYSLPWDQIGYWAVKIVTGVPEAI VI SPLVELLRGS SVGQSTLT FYSLHTFVLPLL
Sbjct: 133 GYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLL 192

Query: 96  SAVFMLMHFPMIR 109
           +AVFMLMHFPMIR
Sbjct: 193 TAVFMLMHFPMIR 205

[Close]
BLAST of Cla97C03G053910 vs. TrEMBL
Match: tr|A0A2S1U5Q8|A0A2S1U5Q8_9GENT (Cytochrome b6 OS=Plumeria cubensis OX=403113 GN=petB PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 7.1e-29
Identity = 68/73 (93.15%), Postives = 69/73 (94.52%), Query Frame = 0 

Query: 36  GYSLPWDQIGYWAVKIVTGVPEAILVIESPLVELLRGSVSVGQSTLTHFYSLHTFVLPLL 95
           GYSLPWDQIGYWAVKIVTGVPEAI VI SPLVELLRGS SVGQSTLT FYSLHTFVLPLL
Sbjct: 135 GYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLL 194

Query: 96  SAVFMLMHFPMIR 109
           SA+FMLMHFPMIR
Sbjct: 195 SAIFMLMHFPMIR 207

[Close]
BLAST of Cla97C03G053910 vs. TrEMBL
Match: tr|A0A059P2R5|A0A059P2R5_9GENT (Cytochrome b6 OS=Asclepias coulteri OX=659948 GN=petB PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.2e-28
Identity = 68/73 (93.15%), Postives = 69/73 (94.52%), Query Frame = 0 

Query: 36  GYSLPWDQIGYWAVKIVTGVPEAILVIESPLVELLRGSVSVGQSTLTHFYSLHTFVLPLL 95
           GYSLPWDQIGYWAVKIVTGVPEAI VI SPLVELLRGS SVGQSTLT FYSLHTFVLPLL
Sbjct: 135 GYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLL 194

Query: 96  SAVFMLMHFPMIR 109
           +AVFMLMHFPMIR
Sbjct: 195 TAVFMLMHFPMIR 207

[Close]
BLAST of Cla97C03G053910 vs. TrEMBL
Match: tr|A0A221HM94|A0A221HM94_9ERIC (Cytochrome b6 OS=Pyrenaria spectabilis var. greeniae OX=197092 GN=petB PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.2e-28
Identity = 68/73 (93.15%), Postives = 69/73 (94.52%), Query Frame = 0 

Query: 36  GYSLPWDQIGYWAVKIVTGVPEAILVIESPLVELLRGSVSVGQSTLTHFYSLHTFVLPLL 95
           GYSLPWDQIGYWAVKIVTGVPEAI VI SPLVELLRGS SVGQSTLT FYSLHTFVLPLL
Sbjct: 140 GYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLL 199

Query: 96  SAVFMLMHFPMIR 109
           +AVFMLMHFPMIR
Sbjct: 200 TAVFMLMHFPMIR 212

[Close]
BLAST of Cla97C03G053910 vs. TrEMBL
Match: tr|A0A0C5CHX0|A0A0C5CHX0_ACTCH (Cytochrome b6 OS=Actinidia chinensis OX=3625 GN=petB PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.2e-28
Identity = 68/73 (93.15%), Postives = 69/73 (94.52%), Query Frame = 0 

Query: 36  GYSLPWDQIGYWAVKIVTGVPEAILVIESPLVELLRGSVSVGQSTLTHFYSLHTFVLPLL 95
           GYSLPWDQIGYWAVKIVTGVPEAI VI SPLVELLRGS SVGQSTLT FYSLHTFVLPLL
Sbjct: 136 GYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLL 195

Query: 96  SAVFMLMHFPMIR 109
           +AVFMLMHFPMIR
Sbjct: 196 TAVFMLMHFPMIR 208

[Close]
BLAST of Cla97C03G053910 vs. TrEMBL
Match: tr|A0A0X8IHM5|A0A0X8IHM5_9GENT (Cytochrome b6 OS=Cynanchum auriculatum OX=157409 GN=petB PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.2e-28
Identity = 68/73 (93.15%), Postives = 69/73 (94.52%), Query Frame = 0 

Query: 36  GYSLPWDQIGYWAVKIVTGVPEAILVIESPLVELLRGSVSVGQSTLTHFYSLHTFVLPLL 95
           GYSLPWDQIGYWAVKIVTGVPEAI VI SPLVELLRGS SVGQSTLT FYSLHTFVLPLL
Sbjct: 135 GYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLL 194

Query: 96  SAVFMLMHFPMIR 109
           +AVFMLMHFPMIR
Sbjct: 195 TAVFMLMHFPMIR 207

[Close]
BLAST of Cla97C03G053910 vs. Swiss-Prot
Match: sp|Q7YJU8|CYB6_CALFG (Cytochrome b6 OS=Calycanthus floridus var. glaucus OX=212734 GN=petB PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 6.0e-31
Identity = 68/73 (93.15%), Postives = 69/73 (94.52%), Query Frame = 0 

Query: 36  GYSLPWDQIGYWAVKIVTGVPEAILVIESPLVELLRGSVSVGQSTLTHFYSLHTFVLPLL 95
           GYSLPWDQIGYWAVKIVTGVPEAI VI SPLVELLRGS SVGQSTLT FYSLHTFVLPLL
Sbjct: 135 GYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLL 194

Query: 96  SAVFMLMHFPMIR 109
           +AVFMLMHFPMIR
Sbjct: 195 TAVFMLMHFPMIR 207

[Close]
BLAST of Cla97C03G053910 vs. Swiss-Prot
Match: sp|Q14FC7|CYB6_POPAL (Cytochrome b6 OS=Populus alba OX=43335 GN=petB PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 6.0e-31
Identity = 68/73 (93.15%), Postives = 69/73 (94.52%), Query Frame = 0 

Query: 36  GYSLPWDQIGYWAVKIVTGVPEAILVIESPLVELLRGSVSVGQSTLTHFYSLHTFVLPLL 95
           GYSLPWDQIGYWAVKIVTGVPEAI VI SPLVELLRGS SVGQSTLT FYSLHTFVLPLL
Sbjct: 135 GYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLL 194

Query: 96  SAVFMLMHFPMIR 109
           +AVFMLMHFPMIR
Sbjct: 195 TAVFMLMHFPMIR 207

[Close]
BLAST of Cla97C03G053910 vs. Swiss-Prot
Match: sp|Q6L372|CYB6_SACHY (Cytochrome b6 OS=Saccharum hybrid OX=15819 GN=petB PE=3 SV=2)

HSP 1 Score: 134.8 bits (338), Expect = 6.0e-31
Identity = 68/73 (93.15%), Postives = 69/73 (94.52%), Query Frame = 0 

Query: 36  GYSLPWDQIGYWAVKIVTGVPEAILVIESPLVELLRGSVSVGQSTLTHFYSLHTFVLPLL 95
           GYSLPWDQIGYWAVKIVTGVPEAI VI SPLVELLRGS SVGQSTLT FYSLHTFVLPLL
Sbjct: 135 GYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLL 194

Query: 96  SAVFMLMHFPMIR 109
           +AVFMLMHFPMIR
Sbjct: 195 TAVFMLMHFPMIR 207

[Close]
BLAST of Cla97C03G053910 vs. Swiss-Prot
Match: sp|Q6ENT4|CYB6_SACOF (Cytochrome b6 OS=Saccharum officinarum OX=4547 GN=petB PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 6.0e-31
Identity = 68/73 (93.15%), Postives = 69/73 (94.52%), Query Frame = 0 

Query: 36  GYSLPWDQIGYWAVKIVTGVPEAILVIESPLVELLRGSVSVGQSTLTHFYSLHTFVLPLL 95
           GYSLPWDQIGYWAVKIVTGVPEAI VI SPLVELLRGS SVGQSTLT FYSLHTFVLPLL
Sbjct: 135 GYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLL 194

Query: 96  SAVFMLMHFPMIR 109
           +AVFMLMHFPMIR
Sbjct: 195 TAVFMLMHFPMIR 207

[Close]
BLAST of Cla97C03G053910 vs. Swiss-Prot
Match: sp|A1E9V4|CYB6_SORBI (Cytochrome b6 OS=Sorghum bicolor OX=4558 GN=petB PE=3 SV=2)

HSP 1 Score: 134.8 bits (338), Expect = 6.0e-31
Identity = 68/73 (93.15%), Postives = 69/73 (94.52%), Query Frame = 0 

Query: 36  GYSLPWDQIGYWAVKIVTGVPEAILVIESPLVELLRGSVSVGQSTLTHFYSLHTFVLPLL 95
           GYSLPWDQIGYWAVKIVTGVPEAI VI SPLVELLRGS SVGQSTLT FYSLHTFVLPLL
Sbjct: 135 GYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLL 194

Query: 96  SAVFMLMHFPMIR 109
           +AVFMLMHFPMIR
Sbjct: 195 TAVFMLMHFPMIR 207

[Close]
BLAST of Cla97C03G053910 vs. TAIR10
Match: ATCG00720.1 (photosynthetic electron transfer B)

HSP 1 Score: 129.8 bits (325), Expect = 1.1e-30
Identity = 66/73 (90.41%), Postives = 68/73 (93.15%), Query Frame = 0 

Query: 36  GYSLPWDQIGYWAVKIVTGVPEAILVIESPLVELLRGSVSVGQSTLTHFYSLHTFVLPLL 95
           GYSLPWDQIGYWAVKIVTGVP+AI VI SPLVELLRGS SVGQSTLT FYSLHTFVLPLL
Sbjct: 135 GYSLPWDQIGYWAVKIVTGVPDAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLL 194

Query: 96  SAVFMLMHFPMIR 109
           +AVFMLMHF MIR
Sbjct: 195 TAVFMLMHFLMIR 207

The following BLAST results are available for this feature:
BLAST of Cla97C03G053910 vs. NCBI nr
Match NameE-valueIdentityDescription
AWI70333.11.1e-2893.15cytochrome b6 (chloroplast) [Plumeria cubensis][more]
YP_665588.11.8e-2893.15cytochrome b6 [Populus alba] >YP_001109532.1 cytochrome b6 [Populus trichocarpa]... [more]
YP_003097604.11.8e-2893.15cytochrome b6 (chloroplast) [Dendrocalamus latiflorus] >YP_009452138.1 cytochrom... [more]
ACT67274.11.8e-2893.15cytochrome b6, partial (chloroplast) [Joinvillea plicata] >AEJ10355.1 cytochrome... [more]
ADN86073.11.8e-2893.15cytochrome b6, partial (chloroplast) [Chasmanthium latifolium][more]
BLAST of Cla97C03G053910 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2S1U5Q8|A0A2S1U5Q8_9GENT7.1e-2993.15Cytochrome b6 OS=Plumeria cubensis OX=403113 GN=petB PE=4 SV=1[more]
tr|A0A059P2R5|A0A059P2R5_9GENT1.2e-2893.15Cytochrome b6 OS=Asclepias coulteri OX=659948 GN=petB PE=3 SV=1[more]
tr|A0A221HM94|A0A221HM94_9ERIC1.2e-2893.15Cytochrome b6 OS=Pyrenaria spectabilis var. greeniae OX=197092 GN=petB PE=3 SV=1[more]
tr|A0A0C5CHX0|A0A0C5CHX0_ACTCH1.2e-2893.15Cytochrome b6 OS=Actinidia chinensis OX=3625 GN=petB PE=3 SV=1[more]
tr|A0A0X8IHM5|A0A0X8IHM5_9GENT1.2e-2893.15Cytochrome b6 OS=Cynanchum auriculatum OX=157409 GN=petB PE=3 SV=1[more]
BLAST of Cla97C03G053910 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q7YJU8|CYB6_CALFG6.0e-3193.15Cytochrome b6 OS=Calycanthus floridus var. glaucus OX=212734 GN=petB PE=3 SV=1[more]
sp|Q14FC7|CYB6_POPAL6.0e-3193.15Cytochrome b6 OS=Populus alba OX=43335 GN=petB PE=3 SV=1[more]
sp|Q6L372|CYB6_SACHY6.0e-3193.15Cytochrome b6 OS=Saccharum hybrid OX=15819 GN=petB PE=3 SV=2[more]
sp|Q6ENT4|CYB6_SACOF6.0e-3193.15Cytochrome b6 OS=Saccharum officinarum OX=4547 GN=petB PE=3 SV=1[more]
sp|A1E9V4|CYB6_SORBI6.0e-3193.15Cytochrome b6 OS=Sorghum bicolor OX=4558 GN=petB PE=3 SV=2[more]
BLAST of Cla97C03G053910 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00720.11.1e-3090.41photosynthetic electron transfer B[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0022904respiratory electron transport chain
GO:0022900electron transport chain
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0045158electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity
GO:0020037heme binding
GO:0016491oxidoreductase activity
GO:0009055electron carrier activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR016174Di-haem_cyt_TM
IPR023530Cyt_B6_PetB
IPR005797Cyt_b/b6_N
IPR027387Cytb/b6-like_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022900 electron transport chain
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0015979 photosynthesis
biological_process GO:0022904 respiratory electron transport chain
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0009536 plastid
cellular_component GO:0042651 thylakoid membrane
molecular_function GO:0009055 electron carrier activity
molecular_function GO:0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016491 oxidoreductase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C03G053910.1Cla97C03G053910.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027387Cytochrome b/b6-like domain superfamilyGENE3DG3DSA:1.20.810.10coord: 29..114
e-value: 1.6E-24
score: 88.2
IPR005797Cytochrome b/b6, N-terminalPFAMPF00033Cytochrome_Bcoord: 34..108
e-value: 2.7E-27
score: 95.7
IPR005797Cytochrome b/b6, N-terminalPROSITEPS51002CYTB_NTERcoord: 35..114
score: 11.718
NoneNo IPR availablePANTHERPTHR19271CYTOCHROME Bcoord: 35..109
IPR023530Cytochrome b6, PetBPANTHERPTHR19271:SF8CYTOCHROME B6coord: 35..109
IPR016174Di-haem cytochrome, transmembraneSUPERFAMILYSSF81342Transmembrane di-heme cytochromescoord: 7..110

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C03G053910Silver-seed gourdcarwmbB0467
Cla97C03G053910Silver-seed gourdcarwmbB1127
Cla97C03G053910Cucumber (Gy14) v2cgybwmbB034
Cla97C03G053910Cucurbita maxima (Rimu)cmawmbB225
Cla97C03G053910Cucurbita maxima (Rimu)cmawmbB467
Cla97C03G053910Cucurbita moschata (Rifu)cmowmbB209
Cla97C03G053910Cucurbita moschata (Rifu)cmowmbB448
Cla97C03G053910Wild cucumber (PI 183967)cpiwmbB034
Cla97C03G053910Cucumber (Chinese Long) v3cucwmbB032
Cla97C03G053910Cucumber (Chinese Long) v2cuwmbB034
Cla97C03G053910Bottle gourd (USVL1VR-Ls)lsiwmbB232
Cla97C03G053910Melon (DHL92) v3.6.1medwmbB142
Cla97C03G053910Melon (DHL92) v3.5.1mewmbB153
Cla97C03G053910Watermelon (Charleston Gray)wcgwmbB186
Cla97C03G053910Watermelon (97103) v1wmwmbB124
Cla97C03G053910Wax gourdwgowmbB481