Cla97C03G053890 (gene) Watermelon (97103) v2

Overview
NameCla97C03G053890
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionXyloglucan endotransglucosylase/hydrolase
LocationCla97Chr03 : 3075785 .. 3075997 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCATTATTTTCTTATCCTTCTCTCTCTCTTTTTGTTCTTCTCTTTCACCTCTTGCCAGAATCCTCCCTCCCCTGGCTATTTTCCAAGCAACCAAGTTCAATCCATTGGCTTTGATCAAGTTTTTCGAAATCGATGGGGCTCTCAACACCAAAGGGTCGACCAAGGAACCTTAACTATCTGGCTCGACAGTTCATCAGGTATACTGTAA

mRNA sequence

ATGGCTCATTATTTTCTTATCCTTCTCTCTCTCTTTTTGTTCTTCTCTTTCACCTCTTGCCAGAATCCTCCCTCCCCTGGCTATTTTCCAAGCAACCAAGTTCAATCCATTGGCTTTGATCAAGTTTTTCGAAATCGATGGGGCTCTCAACACCAAAGGGTCGACCAAGGAACCTTAACTATCTGGCTCGACAGTTCATCAGGTATACTGTAA

Coding sequence (CDS)

ATGGCTCATTATTTTCTTATCCTTCTCTCTCTCTTTTTGTTCTTCTCTTTCACCTCTTGCCAGAATCCTCCCTCCCCTGGCTATTTTCCAAGCAACCAAGTTCAATCCATTGGCTTTGATCAAGTTTTTCGAAATCGATGGGGCTCTCAACACCAAAGGGTCGACCAAGGAACCTTAACTATCTGGCTCGACAGTTCATCAGGTATACTGTAA

Protein sequence

MAHYFLILLSLFLFFSFTSCQNPPSPGYFPSNQVQSIGFDQVFRNRWGSQHQRVDQGTLTIWLDSSSGIL
Homology
[Close]
BLAST of Cla97C03G053890 vs. NCBI nr
Match: XP_022964905.1 (probable xyloglucan endotransglucosylase/hydrolase protein 32 [Cucurbita moschata])

HSP 1 Score: 125.2 bits (313), Expect = 8.9e-26
Identity = 60/68 (88.24%), Postives = 61/68 (89.71%), Query Frame = 0 

Query: 1  MAHYFLILLSLFLFFSFTSCQNPPSPGYFPSNQVQSIGFDQVFRNRWGSQHQRVDQGTLT 60
          M H FLILLSLFLFFSF S QNPPSPGYFPSNQVQSI FD  FRNRWGSQHQ+VDQGTLT
Sbjct: 1  MPHSFLILLSLFLFFSFISSQNPPSPGYFPSNQVQSIAFDHGFRNRWGSQHQKVDQGTLT 60

Query: 61 IWLDSSSG 69
          IWLDSSSG
Sbjct: 61 IWLDSSSG 68

[Close]
BLAST of Cla97C03G053890 vs. NCBI nr
Match: XP_023519903.1 (probable xyloglucan endotransglucosylase/hydrolase protein 32 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125.2 bits (313), Expect = 8.9e-26
Identity = 60/68 (88.24%), Postives = 61/68 (89.71%), Query Frame = 0 

Query: 1  MAHYFLILLSLFLFFSFTSCQNPPSPGYFPSNQVQSIGFDQVFRNRWGSQHQRVDQGTLT 60
          M H FLILLSLFLFFSF S QNPPSPGYFPSNQVQSI FD  FRNRWGSQHQ+VDQGTLT
Sbjct: 1  MPHSFLILLSLFLFFSFISSQNPPSPGYFPSNQVQSIAFDHGFRNRWGSQHQKVDQGTLT 60

Query: 61 IWLDSSSG 69
          IWLDSSSG
Sbjct: 61 IWLDSSSG 68

[Close]
BLAST of Cla97C03G053890 vs. NCBI nr
Match: XP_023519902.1 (probable xyloglucan endotransglucosylase/hydrolase protein 32 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125.2 bits (313), Expect = 8.9e-26
Identity = 60/68 (88.24%), Postives = 61/68 (89.71%), Query Frame = 0 

Query: 1  MAHYFLILLSLFLFFSFTSCQNPPSPGYFPSNQVQSIGFDQVFRNRWGSQHQRVDQGTLT 60
          M H FLILLSLFLFFSF S QNPPSPGYFPSNQVQSI FD  FRNRWGSQHQ+VDQGTLT
Sbjct: 1  MPHSFLILLSLFLFFSFISSQNPPSPGYFPSNQVQSIAFDHGFRNRWGSQHQKVDQGTLT 60

Query: 61 IWLDSSSG 69
          IWLDSSSG
Sbjct: 61 IWLDSSSG 68

[Close]
BLAST of Cla97C03G053890 vs. NCBI nr
Match: XP_022970265.1 (probable xyloglucan endotransglucosylase/hydrolase protein 32 [Cucurbita maxima])

HSP 1 Score: 119.8 bits (299), Expect = 3.7e-24
Identity = 58/68 (85.29%), Postives = 60/68 (88.24%), Query Frame = 0 

Query: 1  MAHYFLILLSLFLFFSFTSCQNPPSPGYFPSNQVQSIGFDQVFRNRWGSQHQRVDQGTLT 60
          M + FLILLSLF FFSFTS QNPPSPGYFPSNQVQSI FD  F NRWGSQHQ+VDQGTLT
Sbjct: 1  MPYSFLILLSLFPFFSFTSSQNPPSPGYFPSNQVQSIAFDHGFLNRWGSQHQKVDQGTLT 60

Query: 61 IWLDSSSG 69
          IWLDSSSG
Sbjct: 61 IWLDSSSG 68

[Close]
BLAST of Cla97C03G053890 vs. NCBI nr
Match: XP_022949180.1 (xyloglucan endotransglucosylase/hydrolase protein 31-like [Cucurbita moschata])

HSP 1 Score: 105.9 bits (263), Expect = 5.6e-20
Identity = 50/68 (73.53%), Postives = 57/68 (83.82%), Query Frame = 0 

Query: 1  MAHYFLILLSLFLFFSFTSCQNPPSPGYFPSNQVQSIGFDQVFRNRWGSQHQRVDQGTLT 60
          MAH+   L+ LF+FFS +S  NPPSPG++PSNQVQSIGFD  FRNRWGSQHQ+VD G LT
Sbjct: 1  MAHF---LVLLFVFFSCSSALNPPSPGFYPSNQVQSIGFDHGFRNRWGSQHQKVDHGALT 60

Query: 61 IWLDSSSG 69
          IWLDSSSG
Sbjct: 61 IWLDSSSG 65

[Close]
BLAST of Cla97C03G053890 vs. TrEMBL
Match: tr|A0A0A0LV02|A0A0A0LV02_CUCSA (Xyloglucan endotransglucosylase/hydrolase OS=Cucumis sativus OX=3659 GN=Csa_1G109370 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.0e-17
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 0 

Query: 23 PPSPGYFPSNQVQSIGFDQVFRNRWGSQHQRVDQGTLTIWLDSSSG 69
          PPSPGYFPS QVQS GFDQVFRNRWGSQHQ+VDQGTLTIWLDSSSG
Sbjct: 27 PPSPGYFPSTQVQSTGFDQVFRNRWGSQHQKVDQGTLTIWLDSSSG 72

[Close]
BLAST of Cla97C03G053890 vs. TrEMBL
Match: tr|A0A1S3CI29|A0A1S3CI29_CUCME (Xyloglucan endotransglucosylase/hydrolase OS=Cucumis melo OX=3656 GN=LOC103501210 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.7e-17
Identity = 48/68 (70.59%), Postives = 52/68 (76.47%), Query Frame = 0 

Query: 2  AHYFLILLSLFLFFSFTSCQN-PPSPGYFPSNQVQSIGFDQVFRNRWGSQHQRVDQGTLT 61
          ++YF             S QN PPSPGYFPSNQVQSIGF Q+FRNRWGSQHQ+VDQGTLT
Sbjct: 3  SYYFXXXXXXXXXXXXXSSQNYPPSPGYFPSNQVQSIGFYQLFRNRWGSQHQKVDQGTLT 62

Query: 62 IWLDSSSG 69
          IWLDSSSG
Sbjct: 63 IWLDSSSG 70

[Close]
BLAST of Cla97C03G053890 vs. TrEMBL
Match: tr|V4SKZ6|V4SKZ6_9ROSI (Xyloglucan endotransglucosylase/hydrolase OS=Citrus clementina OX=85681 GN=CICLE_v10028945mg PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.5e-16
Identity = 44/71 (61.97%), Postives = 53/71 (74.65%), Query Frame = 0 

Query: 1  MAHYFLILLSLFLFFSFTSCQN---PPSPGYFPSNQVQSIGFDQVFRNRWGSQHQRVDQG 60
          MA    +LL L +  + +S  N   PPSPGY+PS+++ SIGFDQ FRN WG QHQRVDQG
Sbjct: 1  MASILYLLLPLLILMTISSVSNGQGPPSPGYYPSSRINSIGFDQAFRNLWGPQHQRVDQG 60

Query: 61 TLTIWLDSSSG 69
          TLT+WLDSSSG
Sbjct: 61 TLTVWLDSSSG 71

[Close]
BLAST of Cla97C03G053890 vs. TrEMBL
Match: tr|A0A067EYQ1|A0A067EYQ1_CITSI (Xyloglucan endotransglucosylase/hydrolase OS=Citrus sinensis OX=2711 GN=CISIN_1g022492mg PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.5e-16
Identity = 44/71 (61.97%), Postives = 53/71 (74.65%), Query Frame = 0 

Query: 1  MAHYFLILLSLFLFFSFTSCQN---PPSPGYFPSNQVQSIGFDQVFRNRWGSQHQRVDQG 60
          MA    +LL L +  + +S  N   PPSPGY+PS+++ SIGFDQ FRN WG QHQRVDQG
Sbjct: 1  MASILYLLLPLLILMTISSVSNGQGPPSPGYYPSSRINSIGFDQAFRNLWGPQHQRVDQG 60

Query: 61 TLTIWLDSSSG 69
          TLT+WLDSSSG
Sbjct: 61 TLTVWLDSSSG 71

[Close]
BLAST of Cla97C03G053890 vs. TrEMBL
Match: tr|A0A2H5QRI0|A0A2H5QRI0_CITUN (Xyloglucan endotransglucosylase/hydrolase OS=Citrus unshiu OX=55188 GN=CUMW_252440 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.2e-16
Identity = 44/71 (61.97%), Postives = 52/71 (73.24%), Query Frame = 0 

Query: 1  MAHYFLILLSLFLFFSFTSCQN---PPSPGYFPSNQVQSIGFDQVFRNRWGSQHQRVDQG 60
          MA    +LL L +  + +S  N   PPSPGY+PS+++ SIGFDQ FRN WG QHQR DQG
Sbjct: 1  MASILYLLLPLLILMTISSVSNGQGPPSPGYYPSSRINSIGFDQAFRNLWGPQHQRADQG 60

Query: 61 TLTIWLDSSSG 69
          TLTIWLDSSSG
Sbjct: 61 TLTIWLDSSSG 71

[Close]
BLAST of Cla97C03G053890 vs. Swiss-Prot
Match: sp|Q9SJL9|XTH32_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis thaliana OX=3702 GN=XTH32 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.9e-12
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 0 

Query: 1  MAHYFLILLSLF----LFFSFTSCQNPPSPGYFPSNQVQSIGFDQVFRNRWGSQHQRVDQ 60
          M +  + LLS+F    L+ S  +   PPSPGY+PS++V S+ F + FRN WG QHQR+DQ
Sbjct: 1  MGNSLISLLSIFHLLVLWGSSVNAYWPPSPGYWPSSKVGSLNFYKGFRNLWGPQHQRMDQ 60

Query: 61 GTLTIWLDSSSG 69
            LTIWLD +SG
Sbjct: 61 NALTIWLDRTSG 72

[Close]
BLAST of Cla97C03G053890 vs. Swiss-Prot
Match: sp|P93046|XTH31_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 31 OS=Arabidopsis thaliana OX=3702 GN=XTH31 PE=1 SV=2)

HSP 1 Score: 65.9 bits (159), Expect = 2.1e-10
Identity = 33/68 (48.53%), Postives = 43/68 (63.24%), Query Frame = 0 

Query: 1  MAHYFLILLSLFLFFSFTSCQNPPSPGYFPSNQVQSIGFDQVFRNRWGSQHQRVDQGTLT 60
          MA   + L  L L  S    Q  PSPGY+PS++V +  FD+ FR  WGSQHQR +Q  +T
Sbjct: 1  MALSLIFLALLVLCPSSGHSQRSPSPGYYPSSRVPTSPFDREFRTLWGSQHQRREQDVVT 60

Query: 61 IWLDSSSG 69
          +WLD S+G
Sbjct: 61 LWLDKSTG 68

[Close]
BLAST of Cla97C03G053890 vs. TAIR10
Match: AT2G36870.1 (xyloglucan endotransglucosylase/hydrolase 32)

HSP 1 Score: 72.0 bits (175), Expect = 1.6e-13
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 0 

Query: 1  MAHYFLILLSLF----LFFSFTSCQNPPSPGYFPSNQVQSIGFDQVFRNRWGSQHQRVDQ 60
          M +  + LLS+F    L+ S  +   PPSPGY+PS++V S+ F + FRN WG QHQR+DQ
Sbjct: 1  MGNSLISLLSIFHLLVLWGSSVNAYWPPSPGYWPSSKVGSLNFYKGFRNLWGPQHQRMDQ 60

Query: 61 GTLTIWLDSSSG 69
            LTIWLD +SG
Sbjct: 61 NALTIWLDRTSG 72

[Close]
BLAST of Cla97C03G053890 vs. TAIR10
Match: AT3G44990.1 (xyloglucan endo-transglycosylase-related 8)

HSP 1 Score: 65.9 bits (159), Expect = 1.2e-11
Identity = 33/68 (48.53%), Postives = 43/68 (63.24%), Query Frame = 0 

Query: 1  MAHYFLILLSLFLFFSFTSCQNPPSPGYFPSNQVQSIGFDQVFRNRWGSQHQRVDQGTLT 60
          MA   + L  L L  S    Q  PSPGY+PS++V +  FD+ FR  WGSQHQR +Q  +T
Sbjct: 1  MALSLIFLALLVLCPSSGHSQRSPSPGYYPSSRVPTSPFDREFRTLWGSQHQRREQDVVT 60

Query: 61 IWLDSSSG 69
          +WLD S+G
Sbjct: 61 LWLDKSTG 68

The following BLAST results are available for this feature:
BLAST of Cla97C03G053890 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022964905.18.9e-2688.24probable xyloglucan endotransglucosylase/hydrolase protein 32 [Cucurbita moschat... [more]
XP_023519903.18.9e-2688.24probable xyloglucan endotransglucosylase/hydrolase protein 32 isoform X2 [Cucurb... [more]
XP_023519902.18.9e-2688.24probable xyloglucan endotransglucosylase/hydrolase protein 32 isoform X1 [Cucurb... [more]
XP_022970265.13.7e-2485.29probable xyloglucan endotransglucosylase/hydrolase protein 32 [Cucurbita maxima][more]
XP_022949180.15.6e-2073.53xyloglucan endotransglucosylase/hydrolase protein 31-like [Cucurbita moschata][more]
BLAST of Cla97C03G053890 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LV02|A0A0A0LV02_CUCSA1.0e-1793.48Xyloglucan endotransglucosylase/hydrolase OS=Cucumis sativus OX=3659 GN=Csa_1G10... [more]
tr|A0A1S3CI29|A0A1S3CI29_CUCME1.7e-1770.59Xyloglucan endotransglucosylase/hydrolase OS=Cucumis melo OX=3656 GN=LOC10350121... [more]
tr|V4SKZ6|V4SKZ6_9ROSI1.5e-1661.97Xyloglucan endotransglucosylase/hydrolase OS=Citrus clementina OX=85681 GN=CICLE... [more]
tr|A0A067EYQ1|A0A067EYQ1_CITSI1.5e-1661.97Xyloglucan endotransglucosylase/hydrolase OS=Citrus sinensis OX=2711 GN=CISIN_1g... [more]
tr|A0A2H5QRI0|A0A2H5QRI0_CITUN3.2e-1661.97Xyloglucan endotransglucosylase/hydrolase OS=Citrus unshiu OX=55188 GN=CUMW_2524... [more]
BLAST of Cla97C03G053890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SJL9|XTH32_ARATH2.9e-1251.39Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis tha... [more]
sp|P93046|XTH31_ARATH2.1e-1048.53Xyloglucan endotransglucosylase/hydrolase protein 31 OS=Arabidopsis thaliana OX=... [more]
BLAST of Cla97C03G053890 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G36870.11.6e-1351.39xyloglucan endotransglucosylase/hydrolase 32[more]
AT3G44990.11.2e-1148.53xyloglucan endo-transglycosylase-related 8[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0006073 cellular glucan metabolic process
biological_process GO:0042546 cell wall biogenesis
biological_process GO:0071555 cell wall organization
biological_process GO:0008152 metabolic process
biological_process GO:0010411 xyloglucan metabolic process
cellular_component GO:0048046 apoplast
cellular_component GO:0005618 cell wall
cellular_component GO:0005576 extracellular region
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0016798 hydrolase activity, acting on glycosyl bonds
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function GO:0016740 transferase activity
molecular_function GO:0016762 xyloglucan:xyloglucosyl transferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C03G053890.1Cla97C03G053890.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:2.60.120.200coord: 19..69
e-value: 2.1E-5
score: 26.0
NoneNo IPR availablePANTHERPTHR31062FAMILY NOT NAMEDcoord: 6..68
NoneNo IPR availablePANTHERPTHR31062:SF52SUBFAMILY NOT NAMEDcoord: 6..68

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C03G053890Silver-seed gourdcarwmbB0467
Cla97C03G053890Silver-seed gourdcarwmbB1127
Cla97C03G053890Cucumber (Gy14) v2cgybwmbB034
Cla97C03G053890Cucurbita maxima (Rimu)cmawmbB225
Cla97C03G053890Cucurbita maxima (Rimu)cmawmbB467
Cla97C03G053890Cucurbita moschata (Rifu)cmowmbB209
Cla97C03G053890Cucurbita moschata (Rifu)cmowmbB448
Cla97C03G053890Wild cucumber (PI 183967)cpiwmbB034
Cla97C03G053890Cucumber (Chinese Long) v3cucwmbB032
Cla97C03G053890Cucumber (Chinese Long) v2cuwmbB034
Cla97C03G053890Bottle gourd (USVL1VR-Ls)lsiwmbB232
Cla97C03G053890Melon (DHL92) v3.6.1medwmbB142
Cla97C03G053890Melon (DHL92) v3.5.1mewmbB153
Cla97C03G053890Watermelon (Charleston Gray)wcgwmbB186
Cla97C03G053890Watermelon (97103) v1wmwmbB124
Cla97C03G053890Wax gourdwgowmbB481