Cla97C03G051400 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C03G051400
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	ran-binding protein 1 homolog a
Location	Cla97Chr03 : 557387 .. 560116 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGCACCGATACCGAACGCAGAGAAGAGGAGGAGGCTCCGGCCGGAGAGGATGAAGACACTGGAGCTCAAGTTGCCCCAATCGTGAAGTTGGAGGAGGTCACCGTCACCACCGGTGAAGAAAATGAAGACGCTATTCTCGATCTGTATGCTTTTCTCTTTACTTCTTTATCTGATCTGCTCAATCTAGGTTTTAATCTTATTTCTTCATGTGGGTTATTCGTATTCGTTGTTTTAGGAAATCCAAACTGTACCGATTCGATAAAGATGGAAATCAATGGAAGGAGAGGGGTGCTGGTACTGTTAAGTTTTTGAAACATAAGGAGACTGGCAAGGTTCGTCTTGTTATGAGACAGTCTAAAACCCTCAAGATCTGCGCTAACCATTTAGGTTCGTCCTCAGTTCACTACTTGTTCCTTCGCCTATATATCAAACTTCTTTGAGTTAATGTCTTTTTTTTTTTTATTATTATTATTTTATTATTTTTTTGTGTTTCTTCTTGATTTAGCTTTAGTTCTTCCATCTTATCGTTTGATTTGTCGTGATTGTAGTACTTCCATCAATGACGGTTCAAGAACACGTTGGAAATGAGAAGTCGTGCGTGTGGCATGCGACTGACTTTGCTGATGGTGAATTGAAAGATGAGCTTTTTTGCATCAGATTCCCATCTATTGATAGTGAGTACAACTCTGAATCTTTTTTCTCTCTAAACCTTGGCTATAGATTGACTGATAGACTCTTCTAGACTTTGGAAATATTGATATCTGGTAGTGGGCAATATTAGTGTTAAAAATGAATCTTTATATTGTTTCACGTTTTGTGTTTTCTTTTCCCCTTCGGGATAAATTATATGTGAGTGCTTTCTAATTGTGTGGTTGTGTCCGGTTCGAAGTATCACTAGGATAATTCTTTTCACTGACAATCTAATCTTATTCGTTTTCTTGTTGTTTTGTATCTGCTTTTTATGCAGTTTGGTTTGTACAGTTTTTCATCATAAGAAATTGCAATATTGTCGTGGTATGTTTTAAGTTGAACGTTTTCCTGATGCCTATCAATACTTAGTGCTATTAGAAATTGAAGAATGGGGTTTATTCTTAAAATCCATTGTATAGTTTTAATCCGTACATAATGGTAACTTTGTCCTTGACACTTCTACTTCTCTGCTTATTTTTACTGATTATTGACTCTATCCATGAATATATTTCTTTTTACTTTCATTTACATTTGTTTTCTCTACTAAAAAAATAGGAAGTTTACTATTCCTAGATCCATCTCTGTTAATCTGCACAGTTTCTTCAGCTATCTTATTCTCTACATGTTCACATTGTATGCCAGTTGTTTTGGCAATGGAAGAGTTGGAGTCTGTTCCTGAATGGCGGAAGTATTATATAGAGTTGCAATTCTATATAATGATAATTCGATAATAAAATTTGATAGGAAAAAGTAGGTGAAAGTTGAGTGGTTTCTTTGGCGAATAGTCGGTTGTAAGCTTACTTCAGAGGATTTTAAGTGATGATACCTAGAAGAAAAAAGCTGTTGCCCTTGGAGTTGTGGTAATGGTACTGACAGTAATGGTACGGACGGAAATTTCCCAGTTAACAATCATCTGTGGCTGCTGTTGCCCTTGGAGGTGTGTAATTGATGCATTGGATATGTTCTGGGTTTTCATCCTTAAATGCAGTGGACCTCTCTGCAGGGGATACGACAAAACTGTTCGATGTAGCTTAGGTGTTGTAATTTTATTTAGACCTCCCTCTCCATGCATCACAAGCTTTCAATGATGTCTCCAATGACTATTACTCCAAATTTGTCTAGGAATTTGGTTCTTTATCATTGTAACTCTTAATAAGGTAGATAAACCTGGATAAATAGACGTCATCCAACAGAGTGGTCCAGTTCTTTCCCTTTCTTAGGGGTGGTGAGTGATGAAGTCTTTTGAATTAATTTAAGCATCATCTCTGCCATGGCTTCATATCTTTGTGTCAGCTAGGAACTCAATCTATGACTTCTAACTCAAGTCATGGGTATTGCAGAAATCTTTTATTTGTTTGTGTTTTTGTAGTTACTAAATTATCAATCTAACAACACAGGATGTTGGATTAGTTTCTTTATACTATAGACTGCAAAACCCTCATGGAAACGTTCCTAGAAGTCCTCTAGTCCCAAAAGATAGATAGTTTCTTTTGAACTGTGCTAATCAGTTTTTTTGGGATGTCTTAAAAAATAAAAAAATTGTTGAAAAGAATTACAAATATAGCAAAATTTTACTTTCTATCTGTGATAGACTGCGATAGACCCAAATAAACATCTATTGCTTTACTAGATAGACACGAATAGATGTCTATTTGGGTCTATTGCGGTCTATCACAGATAGAAAGTGAAATTTTGTTATATTTGTAAATAGTTTGATATTTTTTCTATTTACAATAATTTTCCTTTTTTTTCCCTTGGTTATTTACTTGATCATTATTAATTCTTTTTTTGGTATTATTAGACTGCAAGACCTTCATGGAAACATTCCAAGAAGTTGCAGAGTCCCAAAAGAAGAAAGAGGAAAATAAAGATGCATCAGCAGCAGCTGGTCTACTTGAAAAGTTGAGCGTTGAAGACGAAAAGAAAGCCGAAGATAAAGCTGAAGATAAAGCTGAGGACACACCTGTAAAATCTAAGGAAGAGGATAAACCTGAGGGTGAGGCAGGGAAATCGGATGCAGAGAAGAAAGACTAG

mRNA sequence

ATGGCGAGCACCGATACCGAACGCAGAGAAGAGGAGGAGGCTCCGGCCGGAGAGGATGAAGACACTGGAGCTCAAGTTGCCCCAATCGTGAAGTTGGAGGAGGTCACCGTCACCACCGGTGAAGAAAATGAAGACGCTATTCTCGATCTGAAATCCAAACTGTACCGATTCGATAAAGATGGAAATCAATGGAAGGAGAGGGGTGCTGGTACTGTTAAGTTTTTGAAACATAAGGAGACTGGCAAGGTTCGTCTTGTTATGAGACAGTCTAAAACCCTCAAGATCTGCGCTAACCATTTAGTACTTCCATCAATGACGGTTCAAGAACACGTTGGAAATGAGAAGTCGTGCGTGTGGCATGCGACTGACTTTGCTGATGGTGAATTGAAAGATGAGCTTTTTTGCATCAGATTCCCATCTATTGATAACTGCAAGACCTTCATGGAAACATTCCAAGAAGTTGCAGAGTCCCAAAAGAAGAAAGAGGAAAATAAAGATGCATCAGCAGCAGCTGGTCTACTTGAAAAGTTGAGCGTTGAAGACGAAAAGAAAGCCGAAGATAAAGCTGAAGATAAAGCTGAGGACACACCTGTAAAATCTAAGGAAGAGGATAAACCTGAGGGTGAGGCAGGGAAATCGGATGCAGAGAAGAAAGACTAG

Coding sequence (CDS)

ATGGCGAGCACCGATACCGAACGCAGAGAAGAGGAGGAGGCTCCGGCCGGAGAGGATGAAGACACTGGAGCTCAAGTTGCCCCAATCGTGAAGTTGGAGGAGGTCACCGTCACCACCGGTGAAGAAAATGAAGACGCTATTCTCGATCTGAAATCCAAACTGTACCGATTCGATAAAGATGGAAATCAATGGAAGGAGAGGGGTGCTGGTACTGTTAAGTTTTTGAAACATAAGGAGACTGGCAAGGTTCGTCTTGTTATGAGACAGTCTAAAACCCTCAAGATCTGCGCTAACCATTTAGTACTTCCATCAATGACGGTTCAAGAACACGTTGGAAATGAGAAGTCGTGCGTGTGGCATGCGACTGACTTTGCTGATGGTGAATTGAAAGATGAGCTTTTTTGCATCAGATTCCCATCTATTGATAACTGCAAGACCTTCATGGAAACATTCCAAGAAGTTGCAGAGTCCCAAAAGAAGAAAGAGGAAAATAAAGATGCATCAGCAGCAGCTGGTCTACTTGAAAAGTTGAGCGTTGAAGACGAAAAGAAAGCCGAAGATAAAGCTGAAGATAAAGCTGAGGACACACCTGTAAAATCTAAGGAAGAGGATAAACCTGAGGGTGAGGCAGGGAAATCGGATGCAGAGAAGAAAGACTAG

Protein sequence

MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLKSKLYRFDKDGNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWHATDFADGELKDELFCIRFPSIDNCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVEDEKKAEDKAEDKAEDTPVKSKEEDKPEGEAGKSDAEKKD

Homology

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BLAST of Cla97C03G051400 vs. NCBI nr
Match: XP_022970593.1 (ran-binding protein 1 homolog a-like [Cucurbita maxima])

HSP 1 Score: 288.9 bits (738), Expect = 1.5e-74
Identity = 142/148 (95.95%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 1   MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLKSKLYRFDKD 60
           MAS DTERREEEEAPA EDEDTGAQVAPIVKLEEV VTTGEENEDAILDLKSKLYRFDKD
Sbjct: 1   MASADTERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120
           GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSM+VQEHVGN+KSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIDNCKTFM 149
           ATDFADGELKDELFCIRFPSI+NCKTFM
Sbjct: 121 ATDFADGELKDELFCIRFPSIENCKTFM 148

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BLAST of Cla97C03G051400 vs. NCBI nr
Match: XP_023519267.1 (ran-binding protein 1 homolog a-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 288.9 bits (738), Expect = 1.5e-74
Identity = 142/148 (95.95%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 1   MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLKSKLYRFDKD 60
           MAS DTERREEEEAPA EDEDTGAQVAPIVKLEEV VTTGEENEDAILDLKSKLYRFDKD
Sbjct: 1   MASADTERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120
           GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSM+VQEHVGN+KSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIDNCKTFM 149
           ATDFADGELKDELFCIRFPSI+NCKTFM
Sbjct: 121 ATDFADGELKDELFCIRFPSIENCKTFM 148

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BLAST of Cla97C03G051400 vs. NCBI nr
Match: XP_011658664.1 (PREDICTED: LOW QUALITY PROTEIN: ran-binding protein 1 homolog a-like [Cucumis sativus] >ACF72671.1 Ran-binding protein 1 [Cucumis melo var. cantalupo])

HSP 1 Score: 288.1 bits (736), Expect = 2.5e-74
Identity = 142/148 (95.95%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 1   MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLKSKLYRFDKD 60
           MAS+DTERREEEEAPA EDEDTGAQVAPIVKLE V VTTGEE+EDAILDLKSKLYRFDKD
Sbjct: 1   MASSDTERREEEEAPAAEDEDTGAQVAPIVKLEAVNVTTGEEDEDAILDLKSKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120
           GNQWKERGAGTVKFLKHKETG+VRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKETGRVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIDNCKTFM 149
           ATDFADGELKDELFCIRFPSIDNCKTFM
Sbjct: 121 ATDFADGELKDELFCIRFPSIDNCKTFM 148

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BLAST of Cla97C03G051400 vs. NCBI nr
Match: XP_008457357.1 (PREDICTED: ran-binding protein 1 homolog a [Cucumis melo] >KGN65824.1 hypothetical protein Csa_1G532320 [Cucumis sativus])

HSP 1 Score: 288.1 bits (736), Expect = 2.5e-74
Identity = 142/148 (95.95%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 1   MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLKSKLYRFDKD 60
           MAS+DTERREEEEAPA EDEDTGAQVAPIVKLE V VTTGEE+EDAILDLKSKLYRFDKD
Sbjct: 1   MASSDTERREEEEAPAAEDEDTGAQVAPIVKLEAVNVTTGEEDEDAILDLKSKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120
           GNQWKERGAGTVKFLKHKETG+VRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKETGRVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIDNCKTFM 149
           ATDFADGELKDELFCIRFPSIDNCKTFM
Sbjct: 121 ATDFADGELKDELFCIRFPSIDNCKTFM 148

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BLAST of Cla97C03G051400 vs. NCBI nr
Match: XP_022964941.1 (ran-binding protein 1 homolog a-like [Cucurbita moschata])

HSP 1 Score: 287.7 bits (735), Expect = 3.3e-74
Identity = 141/148 (95.27%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 1   MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLKSKLYRFDKD 60
           MAS DTERREEEEAPA EDEDTGAQVAPIVKLEEV VTTGEENEDAILDLKSKLYRFDKD
Sbjct: 1   MASADTERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120
           GNQWKERGAGTVKFLKH+ETGKVRLVMRQSKTLKICANHLVLPSM+VQEHVGN+KSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHRETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIDNCKTFM 149
           ATDFADGELKDELFCIRFPSI+NCKTFM
Sbjct: 121 ATDFADGELKDELFCIRFPSIENCKTFM 148

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BLAST of Cla97C03G051400 vs. TrEMBL
Match: tr|A0A1S3C5A9|A0A1S3C5A9_CUCME (ran-binding protein 1 homolog a OS=Cucumis melo OX=3656 GN=LOC103497065 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 1.6e-74
Identity = 142/148 (95.95%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 1   MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLKSKLYRFDKD 60
           MAS+DTERREEEEAPA EDEDTGAQVAPIVKLE V VTTGEE+EDAILDLKSKLYRFDKD
Sbjct: 1   MASSDTERREEEEAPAAEDEDTGAQVAPIVKLEAVNVTTGEEDEDAILDLKSKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120
           GNQWKERGAGTVKFLKHKETG+VRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKETGRVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIDNCKTFM 149
           ATDFADGELKDELFCIRFPSIDNCKTFM
Sbjct: 121 ATDFADGELKDELFCIRFPSIDNCKTFM 148

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BLAST of Cla97C03G051400 vs. TrEMBL
Match: tr|B5AJV3|B5AJV3_CUCMN (Ran-binding protein 1 OS=Cucumis melo var. cantalupensis OX=3658 PE=2 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 1.6e-74
Identity = 142/148 (95.95%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 1   MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLKSKLYRFDKD 60
           MAS+DTERREEEEAPA EDEDTGAQVAPIVKLE V VTTGEE+EDAILDLKSKLYRFDKD
Sbjct: 1   MASSDTERREEEEAPAAEDEDTGAQVAPIVKLEAVNVTTGEEDEDAILDLKSKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120
           GNQWKERGAGTVKFLKHKETG+VRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKETGRVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIDNCKTFM 149
           ATDFADGELKDELFCIRFPSIDNCKTFM
Sbjct: 121 ATDFADGELKDELFCIRFPSIDNCKTFM 148

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BLAST of Cla97C03G051400 vs. TrEMBL
Match: tr|A0A0A0LXN6|A0A0A0LXN6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532320 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 1.6e-74
Identity = 142/148 (95.95%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 1   MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLKSKLYRFDKD 60
           MAS+DTERREEEEAPA EDEDTGAQVAPIVKLE V VTTGEE+EDAILDLKSKLYRFDKD
Sbjct: 1   MASSDTERREEEEAPAAEDEDTGAQVAPIVKLEAVNVTTGEEDEDAILDLKSKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120
           GNQWKERGAGTVKFLKHKETG+VRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKETGRVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIDNCKTFM 149
           ATDFADGELKDELFCIRFPSIDNCKTFM
Sbjct: 121 ATDFADGELKDELFCIRFPSIDNCKTFM 148

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BLAST of Cla97C03G051400 vs. TrEMBL
Match: tr|A0A0A0LV78|A0A0A0LV78_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532330 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.0e-71
Identity = 134/148 (90.54%), Postives = 144/148 (97.30%), Query Frame = 0


Query: 1   MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLKSKLYRFDKD 60
           MASTD+ERR++EEAPAGEDEDTGAQVAPIVKLE V VTTGEE+ED +LDLK+KLYRFDKD
Sbjct: 1   MASTDSERRDDEEAPAGEDEDTGAQVAPIVKLEAVDVTTGEEDEDTVLDLKAKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120
           GNQWKERGAGTVKFLKHK+TGKVRLVMRQSKTLKICANHLVLPSMTVQEH GN+KSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKQTGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIDNCKTFM 149
           ATDFADGELKDELFCIRFPSI+NCK+FM
Sbjct: 121 ATDFADGELKDELFCIRFPSIENCKSFM 148

[Close]

BLAST of Cla97C03G051400 vs. TrEMBL
Match: tr|A0A1S3C5F4|A0A1S3C5F4_CUCME (ran-binding protein 1 homolog a-like OS=Cucumis melo OX=3656 GN=LOC103497064 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 2.5e-70
Identity = 132/148 (89.19%), Postives = 144/148 (97.30%), Query Frame = 0


Query: 1   MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLKSKLYRFDKD 60
           MA++D+ERR++EEA AGEDEDTGAQVAPIVKLE V VTTGEE+EDA+LDLK+KLYRFDKD
Sbjct: 1   MATSDSERRDDEEAHAGEDEDTGAQVAPIVKLEAVDVTTGEEDEDAVLDLKAKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120
           GNQWKERGAGTVKFLKHK+TGKVRLVMRQSKTLKICANHLVLPSMTVQEH GN+KSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKQTGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIDNCKTFM 149
           ATDFADGELKDELFCIRFPSI+NCK+FM
Sbjct: 121 ATDFADGELKDELFCIRFPSIENCKSFM 148

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BLAST of Cla97C03G051400 vs. Swiss-Prot
Match: sp|P92985|RBP1C_ARATH (Ran-binding protein 1 homolog c OS=Arabidopsis thaliana OX=3702 GN=RANBP1C PE=2 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 4.2e-65
Identity = 122/149 (81.88%), Postives = 134/149 (89.93%), Query Frame = 0


Query: 1   MASTDTER-REEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLKSKLYRFDK 60
           MAST+ ER   E+E    EDEDTGAQVAPIV+LEEV VTTGEE+EDA+LDLKSK+YRFDK
Sbjct: 1   MASTEPERENREDETEVNEDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKMYRFDK 60

Query: 61  DGNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVW 120
           +GNQWKERGAGTVK LKHKETGKVRLVMRQSKTLKICANHL+   M+VQEH GNEKSC+W
Sbjct: 61  EGNQWKERGAGTVKLLKHKETGKVRLVMRQSKTLKICANHLISSGMSVQEHSGNEKSCLW 120

Query: 121 HATDFADGELKDELFCIRFPSIDNCKTFM 149
           HATDF+DGELKDELFCIRF SI+NCKTFM
Sbjct: 121 HATDFSDGELKDELFCIRFASIENCKTFM 149

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BLAST of Cla97C03G051400 vs. Swiss-Prot
Match: sp|Q8RWG8|RBP1B_ARATH (Ran-binding protein 1 homolog b OS=Arabidopsis thaliana OX=3702 GN=RANBP1B PE=1 SV=2)

HSP 1 Score: 241.5 bits (615), Expect = 8.7e-63
Identity = 116/144 (80.56%), Postives = 129/144 (89.58%), Query Frame = 0


Query: 5   DTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLKSKLYRFDKDGNQW 64
           + E R+EEE  A EDEDTGAQVAPIV+LEEV VTTGEE+ED ILDLKSKLYRFDKDG+QW
Sbjct: 9   ERENRDEEETGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDTILDLKSKLYRFDKDGSQW 68

Query: 65  KERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWHATDF 124
           KERGAGTVKFLKH+ +GK+RLVMRQSKTLKICANHLV   M+VQEH GN+KSCVWHA DF
Sbjct: 69  KERGAGTVKFLKHRVSGKIRLVMRQSKTLKICANHLVGSGMSVQEHAGNDKSCVWHARDF 128

Query: 125 ADGELKDELFCIRFPSIDNCKTFM 149
           +DGELKDELFCIRF S++NCK FM
Sbjct: 129 SDGELKDELFCIRFASVENCKAFM 152

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BLAST of Cla97C03G051400 vs. Swiss-Prot
Match: sp|Q9LMK7|RBP1A_ARATH (Ran-binding protein 1 homolog a OS=Arabidopsis thaliana OX=3702 GN=RANBP1A PE=1 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 4.8e-61
Identity = 112/127 (88.19%), Postives = 118/127 (92.91%), Query Frame = 0


Query: 22  TGAQVAPIVKLEEVTVTTGEENEDAILDLKSKLYRFDKDGNQWKERGAGTVKFLKHKETG 81
           TGAQVAPIV+LEEV VTTGEE+EDA+LDLKSKLYRFDKD NQWKERGAGTVKFLKHK TG
Sbjct: 24  TGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKLYRFDKDANQWKERGAGTVKFLKHKNTG 83

Query: 82  KVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWHATDFADGELKDELFCIRFPSI 141
           K+RLVMRQSKTLKICANH V   M+VQEHVGNEKSCVWHA DFADGELKDELFCIRF SI
Sbjct: 84  KIRLVMRQSKTLKICANHFVKSGMSVQEHVGNEKSCVWHARDFADGELKDELFCIRFASI 143

Query: 142 DNCKTFM 149
           +NCKTFM
Sbjct: 144 ENCKTFM 150

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BLAST of Cla97C03G051400 vs. Swiss-Prot
Match: sp|Q09717|RANG_SCHPO (Ran-specific GTPase-activating protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sbp1 PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 4.8e-29
Identity = 62/121 (51.24%), Postives = 82/121 (67.77%), Query Frame = 0


Query: 28  PIVKLEEVTVTTGEENEDAILDLKSKLYRFDKDGNQWKERGAGTVKFLKHKETGKVRLVM 87
           PIVKL  V   T EE E     +++KL+RFDK  ++WKERG G  + LKHKETGK RLVM
Sbjct: 77  PIVKLSAVETKTNEEEETVEFKMRAKLFRFDKAASEWKERGTGDARLLKHKETGKTRLVM 136

Query: 88  RQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH-ATDFADGELKDELFCIRFPSIDNCKT 147
           R+ KTLK+CANHL++P M +  +VG+++S VW  A D ++GE   E F IRF + +N   
Sbjct: 137 RRDKTLKVCANHLLMPEMKLTPNVGSDRSWVWTVAADVSEGEPTAETFAIRFANSENANL 196

[Close]

BLAST of Cla97C03G051400 vs. Swiss-Prot
Match: sp|H2QII6|RBP2_PANTR (E3 SUMO-protein ligase RanBP2 OS=Pan troglodytes OX=9598 GN=RANBP2 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.4e-28
Identity = 59/132 (44.70%), Postives = 87/132 (65.91%), Query Frame = 0


Query: 17   GEDEDTGAQVAPIVKL-EEVTVTTGEENEDAILDLKSKLYRFDKDGNQWKERGAGTVKFL 76
            G+D+D G    P+V L +++ V TGEE+E+     ++KL+RFD +  +WKERG G VK L
Sbjct: 1163 GDDDDDGPHFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKIL 1222

Query: 77   KHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWHATDFADGELKDELFC 136
            +HK +GK+RL+MR+ + LKICANH + P M +  + G+++S VWHA D+AD   K E   
Sbjct: 1223 RHKTSGKIRLLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQLA 1282

Query: 137  IRFPSIDNCKTF 148
            IRF + +    F
Sbjct: 1283 IRFKTPEEAALF 1294

[Close]

BLAST of Cla97C03G051400 vs. TAIR10
Match: AT5G58590.1 (RAN binding protein 1)

HSP 1 Score: 249.2 bits (635), Expect = 2.3e-66
Identity = 122/149 (81.88%), Postives = 134/149 (89.93%), Query Frame = 0


Query: 1   MASTDTER-REEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLKSKLYRFDK 60
           MAST+ ER   E+E    EDEDTGAQVAPIV+LEEV VTTGEE+EDA+LDLKSK+YRFDK
Sbjct: 1   MASTEPERENREDETEVNEDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKMYRFDK 60

Query: 61  DGNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVW 120
           +GNQWKERGAGTVK LKHKETGKVRLVMRQSKTLKICANHL+   M+VQEH GNEKSC+W
Sbjct: 61  EGNQWKERGAGTVKLLKHKETGKVRLVMRQSKTLKICANHLISSGMSVQEHSGNEKSCLW 120

Query: 121 HATDFADGELKDELFCIRFPSIDNCKTFM 149
           HATDF+DGELKDELFCIRF SI+NCKTFM
Sbjct: 121 HATDFSDGELKDELFCIRFASIENCKTFM 149

[Close]

BLAST of Cla97C03G051400 vs. TAIR10
Match: AT2G30060.1 (Pleckstrin homology (PH) domain superfamily protein)

HSP 1 Score: 241.5 bits (615), Expect = 4.8e-64
Identity = 116/144 (80.56%), Postives = 129/144 (89.58%), Query Frame = 0


Query: 5   DTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLKSKLYRFDKDGNQW 64
           + E R+EEE  A EDEDTGAQVAPIV+LEEV VTTGEE+ED ILDLKSKLYRFDKDG+QW
Sbjct: 9   ERENRDEEETGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDTILDLKSKLYRFDKDGSQW 68

Query: 65  KERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWHATDF 124
           KERGAGTVKFLKH+ +GK+RLVMRQSKTLKICANHLV   M+VQEH GN+KSCVWHA DF
Sbjct: 69  KERGAGTVKFLKHRVSGKIRLVMRQSKTLKICANHLVGSGMSVQEHAGNDKSCVWHARDF 128

Query: 125 ADGELKDELFCIRFPSIDNCKTFM 149
           +DGELKDELFCIRF S++NCK FM
Sbjct: 129 SDGELKDELFCIRFASVENCKAFM 152

[Close]

BLAST of Cla97C03G051400 vs. TAIR10
Match: AT1G07140.1 (Pleckstrin homology (PH) domain superfamily protein)

HSP 1 Score: 235.7 bits (600), Expect = 2.7e-62
Identity = 112/127 (88.19%), Postives = 118/127 (92.91%), Query Frame = 0


Query: 22  TGAQVAPIVKLEEVTVTTGEENEDAILDLKSKLYRFDKDGNQWKERGAGTVKFLKHKETG 81
           TGAQVAPIV+LEEV VTTGEE+EDA+LDLKSKLYRFDKD NQWKERGAGTVKFLKHK TG
Sbjct: 24  TGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKLYRFDKDANQWKERGAGTVKFLKHKNTG 83

Query: 82  KVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWHATDFADGELKDELFCIRFPSI 141
           K+RLVMRQSKTLKICANH V   M+VQEHVGNEKSCVWHA DFADGELKDELFCIRF SI
Sbjct: 84  KIRLVMRQSKTLKICANHFVKSGMSVQEHVGNEKSCVWHARDFADGELKDELFCIRFASI 143

Query: 142 DNCKTFM 149
           +NCKTFM
Sbjct: 144 ENCKTFM 150

[Close]

BLAST of Cla97C03G051400 vs. TAIR10
Match: AT3G15970.1 (NUP50 (Nucleoporin 50 kDa) protein)

HSP 1 Score: 51.6 bits (122), Expect = 7.1e-07
Identity = 34/98 (34.69%), Postives = 50/98 (51.02%), Query Frame = 0


Query: 33  EEVTVTTGEENEDAILDLKSKLYRFDKDGNQWKERGAGTVKF-LKHKETGKVRLVMRQSK 92
           ++V+V TGEENE A     S ++ + + G  WKERG G +K  +   E  K RLVMR   
Sbjct: 320 QDVSVETGEENEKAAFTADSVMFEYLEGG--WKERGKGELKVNISTTENRKARLVMRSKG 379

Query: 93  TLKICANHLVLPSMTV--QEHVGNEKSCVWHATDFADG 128
             ++  N  + P M +   +  G   +CV   +D  DG
Sbjct: 380 NYRLTLNASLYPEMKLAKMDKKGITFACVNSVSDAKDG 415

The following BLAST results are available for this feature:

BLAST of Cla97C03G051400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022970593.1	1.5e-74	95.95	ran-binding protein 1 homolog a-like [Cucurbita maxima]	[more]
XP_023519267.1	1.5e-74	95.95	ran-binding protein 1 homolog a-like [Cucurbita pepo subsp. pepo]	[more]
XP_011658664.1	2.5e-74	95.95	PREDICTED: LOW QUALITY PROTEIN: ran-binding protein 1 homolog a-like [Cucumis sa...	[more]
XP_008457357.1	2.5e-74	95.95	PREDICTED: ran-binding protein 1 homolog a [Cucumis melo] >KGN65824.1 hypothetic...	[more]
XP_022964941.1	3.3e-74	95.27	ran-binding protein 1 homolog a-like [Cucurbita moschata]	[more]

BLAST of Cla97C03G051400 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C5A9\|A0A1S3C5A9_CUCME	1.6e-74	95.95	ran-binding protein 1 homolog a OS=Cucumis melo OX=3656 GN=LOC103497065 PE=4 SV=...	[more]
tr\|B5AJV3\|B5AJV3_CUCMN	1.6e-74	95.95	Ran-binding protein 1 OS=Cucumis melo var. cantalupensis OX=3658 PE=2 SV=1	[more]
tr\|A0A0A0LXN6\|A0A0A0LXN6_CUCSA	1.6e-74	95.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532320 PE=4 SV=1	[more]
tr\|A0A0A0LV78\|A0A0A0LV78_CUCSA	1.0e-71	90.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532330 PE=4 SV=1	[more]
tr\|A0A1S3C5F4\|A0A1S3C5F4_CUCME	2.5e-70	89.19	ran-binding protein 1 homolog a-like OS=Cucumis melo OX=3656 GN=LOC103497064 PE=...	[more]

BLAST of Cla97C03G051400 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P92985\|RBP1C_ARATH	4.2e-65	81.88	Ran-binding protein 1 homolog c OS=Arabidopsis thaliana OX=3702 GN=RANBP1C PE=2 ...	[more]
sp\|Q8RWG8\|RBP1B_ARATH	8.7e-63	80.56	Ran-binding protein 1 homolog b OS=Arabidopsis thaliana OX=3702 GN=RANBP1B PE=1 ...	[more]
sp\|Q9LMK7\|RBP1A_ARATH	4.8e-61	88.19	Ran-binding protein 1 homolog a OS=Arabidopsis thaliana OX=3702 GN=RANBP1A PE=1 ...	[more]
sp\|Q09717\|RANG_SCHPO	4.8e-29	51.24	Ran-specific GTPase-activating protein 1 OS=Schizosaccharomyces pombe (strain 97...	[more]
sp\|H2QII6\|RBP2_PANTR	5.4e-28	44.70	E3 SUMO-protein ligase RanBP2 OS=Pan troglodytes OX=9598 GN=RANBP2 PE=1 SV=1	[more]

BLAST of Cla97C03G051400 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G58590.1	2.3e-66	81.88	RAN binding protein 1	[more]
AT2G30060.1	4.8e-64	80.56	Pleckstrin homology (PH) domain superfamily protein	[more]
AT1G07140.1	2.7e-62	88.19	Pleckstrin homology (PH) domain superfamily protein	[more]
AT3G15970.1	7.1e-07	34.69	NUP50 (Nucleoporin 50 kDa) protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0046907	intracellular transport

Vocabulary: **INTERPRO**
Term	Definition
IPR011993	PH-like_dom_sf
IPR000156	Ran_bind_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046907	intracellular transport
cellular_component	GO:0005622	intracellular

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C03G051400.1	Cla97C03G051400.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000156	Ran binding domain	SMART	SM00160	ranbd_3	coord: 26..154 e-value: 1.7E-41 score: 153.9
IPR000156	Ran binding domain	PFAM	PF00638	Ran_BP1	coord: 37..154 e-value: 1.5E-39 score: 134.9
IPR000156	Ran binding domain	PROSITE	PS50196	RANBD1	coord: 25..160 score: 34.43
IPR011993	PH-like domain superfamily	GENE3D	G3DSA:2.30.29.30		coord: 9..173 e-value: 5.7E-52 score: 177.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..219
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..219
None	No IPR available	PANTHER	PTHR23138	RAN BINDING PROTEIN	coord: 5..218
None	No IPR available	PANTHER	PTHR23138:SF107	SUBFAMILY NOT NAMED	coord: 5..218
None	No IPR available	CDD	cd13179	RanBD_RanBP1	coord: 23..156 e-value: 3.93297E-66 score: 202.028
None	No IPR available	SUPERFAMILY	SSF50729	PH domain-like	coord: 24..162

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C03G051400	Watermelon (97103) v2	wmbwmbB051
Cla97C03G051400	Silver-seed gourd	carwmbB0545
Cla97C03G051400	Silver-seed gourd	carwmbB0642
Cla97C03G051400	Silver-seed gourd	carwmbB0694
Cla97C03G051400	Silver-seed gourd	carwmbB1053
Cla97C03G051400	Cucumber (Gy14) v2	cgybwmbB042
Cla97C03G051400	Cucumber (Gy14) v1	cgywmbB257
Cla97C03G051400	Cucumber (Gy14) v1	cgywmbB320
Cla97C03G051400	Cucurbita maxima (Rimu)	cmawmbB225
Cla97C03G051400	Cucurbita maxima (Rimu)	cmawmbB257
Cla97C03G051400	Cucurbita maxima (Rimu)	cmawmbB467
Cla97C03G051400	Cucurbita maxima (Rimu)	cmawmbB748
Cla97C03G051400	Cucurbita maxima (Rimu)	cmawmbB749
Cla97C03G051400	Cucurbita maxima (Rimu)	cmawmbB854
Cla97C03G051400	Cucurbita moschata (Rifu)	cmowmbB209
Cla97C03G051400	Cucurbita moschata (Rifu)	cmowmbB237
Cla97C03G051400	Cucurbita moschata (Rifu)	cmowmbB448
Cla97C03G051400	Cucurbita moschata (Rifu)	cmowmbB720
Cla97C03G051400	Cucurbita moschata (Rifu)	cmowmbB721
Cla97C03G051400	Cucurbita moschata (Rifu)	cmowmbB830
Cla97C03G051400	Wild cucumber (PI 183967)	cpiwmbB044
Cla97C03G051400	Wild cucumber (PI 183967)	cpiwmbB204
Cla97C03G051400	Cucumber (Chinese Long) v3	cucwmbB042
Cla97C03G051400	Cucumber (Chinese Long) v2	cuwmbB043
Cla97C03G051400	Cucumber (Chinese Long) v2	cuwmbB199
Cla97C03G051400	Bottle gourd (USVL1VR-Ls)	lsiwmbB177
Cla97C03G051400	Melon (DHL92) v3.6.1	medwmbB142
Cla97C03G051400	Melon (DHL92) v3.6.1	medwmbB316
Cla97C03G051400	Melon (DHL92) v3.5.1	mewmbB153
Cla97C03G051400	Melon (DHL92) v3.5.1	mewmbB328
Cla97C03G051400	Watermelon (Charleston Gray)	wcgwmbB046
Cla97C03G051400	Watermelon (Charleston Gray)	wcgwmbB186
Cla97C03G051400	Watermelon (97103) v1	wmwmbB065
Cla97C03G051400	Watermelon (97103) v1	wmwmbB124
Cla97C03G051400	Wax gourd	wgowmbB470