Cla97C02G048050 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C02G048050
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Cytochrome-c oxidase/ electron carrier
Location	Cla97Chr02 : 35653666 .. 35653979 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGAAGTAGAACAACCTTTTAGACCCCGCGAGAAACTTATTGAGAAGCAAAAATATTTCCAGAGCATCCACAAGCACACTTATCTTAAAGGGCCAATGGACAAAGTCACCTCCGTTGCCATTCCAATTGCTCTTGCAGCTTCATCACTGTATCTTATCGTAAGTTTACCTCTCTCCAGTGCATTGAAGATTTTCTTGCCCATTTCAGTTAATGTTGAATGATTCGCCTGACTGTGTCGATCTCATTCATGTCTTTTGTACAGGGACGAGGAATTTATAACATGTCGCACGGGATTGGAAAGAAAGAATGA

mRNA sequence

ATGACAGAAGTAGAACAACCTTTTAGACCCCGCGAGAAACTTATTGAGAAGCAAAAATATTTCCAGAGCATCCACAAGCACACTTATCTTAAAGGGCCAATGGACAAAGTCACCTCCGTTGCCATTCCAATTGCTCTTGCAGCTTCATCACTGTATCTTATCGGACGAGGAATTTATAACATGTCGCACGGGATTGGAAAGAAAGAATGA

Coding sequence (CDS)

ATGACAGAAGTAGAACAACCTTTTAGACCCCGCGAGAAACTTATTGAGAAGCAAAAATATTTCCAGAGCATCCACAAGCACACTTATCTTAAAGGGCCAATGGACAAAGTCACCTCCGTTGCCATTCCAATTGCTCTTGCAGCTTCATCACTGTATCTTATCGGACGAGGAATTTATAACATGTCGCACGGGATTGGAAAGAAAGAATGA

Protein sequence

MTEVEQPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYNMSHGIGKKE

Homology

[Close]

BLAST of Cla97C02G048050 vs. NCBI nr
Match: XP_008458612.1 (PREDICTED: uncharacterized protein LOC103497961 [Cucumis melo] >XP_008458613.1 PREDICTED: uncharacterized protein LOC103497961 [Cucumis melo])

HSP 1 Score: 137.5 bits (345), Expect = 1.7e-29
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MTEVEQPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYN 60
          M EVEQPFRPREKL+EKQKYFQSIHKHTYLKGPMDK+TSVAIPIALAASSLYLIGRGIYN
Sbjct: 1  MAEVEQPFRPREKLVEKQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYN 60

Query: 61 MSHGIGKKE 70
          MSHGIGKKE
Sbjct: 61 MSHGIGKKE 69

[Close]

BLAST of Cla97C02G048050 vs. NCBI nr
Match: XP_004145797.1 (PREDICTED: uncharacterized protein LOC101208002 isoform X2 [Cucumis sativus] >XP_004145798.1 PREDICTED: uncharacterized protein LOC101208002 isoform X2 [Cucumis sativus] >XP_011657060.1 PREDICTED: uncharacterized protein LOC101208002 isoform X2 [Cucumis sativus] >KGN46929.1 hypothetical protein Csa_6G151660 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 1.4e-28
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MTEVEQPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYN 60
          M EVEQPFRPREKL+EKQK FQSIHKHTYLKGPMDK+TSVAIPIALAASSLYLIGRGIYN
Sbjct: 1  MAEVEQPFRPREKLVEKQKIFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYN 60

Query: 61 MSHGIGKKE 70
          MSHGIGKKE
Sbjct: 61 MSHGIGKKE 69

[Close]

BLAST of Cla97C02G048050 vs. NCBI nr
Match: XP_011657059.1 (PREDICTED: uncharacterized protein LOC101208002 isoform X1 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 1.4e-28
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1   MTEVEQPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYN 60
           M EVEQPFRPREKL+EKQK FQSIHKHTYLKGPMDK+TSVAIPIALAASSLYLIGRGIYN
Sbjct: 48  MAEVEQPFRPREKLVEKQKIFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYN 107

Query: 61  MSHGIGKKE 70
           MSHGIGKKE
Sbjct: 108 MSHGIGKKE 116

[Close]

BLAST of Cla97C02G048050 vs. NCBI nr
Match: XP_023532621.1 (uncharacterized protein LOC111794729 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 133.3 bits (334), Expect = 3.2e-28
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MTEVEQPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYN 60
          M   EQPFRPREKLIEKQKYFQSIHKHTYLKGPMDK+TSVAIPIALAASSLYLIGRGIYN
Sbjct: 1  MDMTEQPFRPREKLIEKQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYN 60

Query: 61 MSHGIGKKE 70
          MSHGIGKKE
Sbjct: 61 MSHGIGKKE 69

[Close]

BLAST of Cla97C02G048050 vs. NCBI nr
Match: XP_023532622.1 (uncharacterized protein LOC111794729 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.5 bits (332), Expect = 5.5e-28
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 5  EQPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYNMSHG 64
          EQPFRPREKLIEKQKYFQSIHKHTYLKGPMDK+TSVAIPIALAASSLYLIGRGIYNMSHG
Sbjct: 3  EQPFRPREKLIEKQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMSHG 62

Query: 65 IGKKE 70
          IGKKE
Sbjct: 63 IGKKE 67

[Close]

BLAST of Cla97C02G048050 vs. TrEMBL
Match: tr|A0A1S3C9H3|A0A1S3C9H3_CUCME (uncharacterized protein LOC103497961 OS=Cucumis melo OX=3656 GN=LOC103497961 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-29
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MTEVEQPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYN 60
          M EVEQPFRPREKL+EKQKYFQSIHKHTYLKGPMDK+TSVAIPIALAASSLYLIGRGIYN
Sbjct: 1  MAEVEQPFRPREKLVEKQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYN 60

Query: 61 MSHGIGKKE 70
          MSHGIGKKE
Sbjct: 61 MSHGIGKKE 69

[Close]

BLAST of Cla97C02G048050 vs. TrEMBL
Match: tr|A0A0A0KDL3|A0A0A0KDL3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G151660 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 9.6e-29
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MTEVEQPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYN 60
          M EVEQPFRPREKL+EKQK FQSIHKHTYLKGPMDK+TSVAIPIALAASSLYLIGRGIYN
Sbjct: 1  MAEVEQPFRPREKLVEKQKIFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYN 60

Query: 61 MSHGIGKKE 70
          MSHGIGKKE
Sbjct: 61 MSHGIGKKE 69

[Close]

BLAST of Cla97C02G048050 vs. TrEMBL
Match: tr|A0A067EKA3|A0A067EKA3_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g035248mg PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 8.1e-28
Identity = 63/69 (91.30%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MTEVEQPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYN 60
          M+E E PFRPREKL+EKQK+FQSIHKHTYLKGPMDK+TSVAIPIALAASSLYLIGRGIYN
Sbjct: 1  MSETEVPFRPREKLLEKQKHFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYN 60

Query: 61 MSHGIGKKE 70
          MSHGIGKKE
Sbjct: 61 MSHGIGKKE 69

[Close]

BLAST of Cla97C02G048050 vs. TrEMBL
Match: tr|V4SAQ5|V4SAQ5_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029753mg PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.8e-27
Identity = 62/69 (89.86%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MTEVEQPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYN 60
          M+E E PFRPREKL+EKQK+FQSIHKHTYLKGPMDK+TSVAIPIALAAS+LYLIGRGIYN
Sbjct: 1  MSETEVPFRPREKLLEKQKHFQSIHKHTYLKGPMDKITSVAIPIALAASALYLIGRGIYN 60

Query: 61 MSHGIGKKE 70
          MSHGIGKKE
Sbjct: 61 MSHGIGKKE 69

[Close]

BLAST of Cla97C02G048050 vs. TrEMBL
Match: tr|A0A2H5Q582|A0A2H5Q582_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_197260 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.8e-27
Identity = 62/69 (89.86%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MTEVEQPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYN 60
          M+E E PFRPREKL+EKQK+FQSIHKHTYLKGPMDK+TSVAIPIALAAS+LYLIGRGIYN
Sbjct: 4  MSETEVPFRPREKLLEKQKHFQSIHKHTYLKGPMDKITSVAIPIALAASALYLIGRGIYN 63

Query: 61 MSHGIGKKE 70
          MSHGIGKKE
Sbjct: 64 MSHGIGKKE 72

[Close]

BLAST of Cla97C02G048050 vs. TAIR10
Match: AT4G21105.1 (cytochrome-c oxidases;electron carriers)

HSP 1 Score: 115.2 bits (287), Expect = 1.7e-26
Identity = 55/65 (84.62%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 5  EQPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYNMSHG 64
          E PFRPREKL+EKQ+ FQSI +HTYLKGPMDK+TSVAIPIALAASSLY+IG GIYNMS+G
Sbjct: 4  ETPFRPREKLLEKQRLFQSIQRHTYLKGPMDKITSVAIPIALAASSLYMIGTGIYNMSNG 63

Query: 65 IGKKE 70
          IGKKE
Sbjct: 64 IGKKE 68

The following BLAST results are available for this feature:

BLAST of Cla97C02G048050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008458612.1	1.7e-29	95.65	PREDICTED: uncharacterized protein LOC103497961 [Cucumis melo] >XP_008458613.1 P...	[more]
XP_004145797.1	1.4e-28	94.20	PREDICTED: uncharacterized protein LOC101208002 isoform X2 [Cucumis sativus] >XP...	[more]
XP_011657059.1	1.4e-28	94.20	PREDICTED: uncharacterized protein LOC101208002 isoform X1 [Cucumis sativus]	[more]
XP_023532621.1	3.2e-28	94.20	uncharacterized protein LOC111794729 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023532622.1	5.5e-28	98.46	uncharacterized protein LOC111794729 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cla97C02G048050 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C9H3\|A0A1S3C9H3_CUCME	1.1e-29	95.65	uncharacterized protein LOC103497961 OS=Cucumis melo OX=3656 GN=LOC103497961 PE=...	[more]
tr\|A0A0A0KDL3\|A0A0A0KDL3_CUCSA	9.6e-29	94.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G151660 PE=4 SV=1	[more]
tr\|A0A067EKA3\|A0A067EKA3_CITSI	8.1e-28	91.30	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g035248mg PE=4 SV=1	[more]
tr\|V4SAQ5\|V4SAQ5_9ROSI	1.8e-27	89.86	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029753mg PE=4 ...	[more]
tr\|A0A2H5Q582\|A0A2H5Q582_CITUN	1.8e-27	89.86	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_197260 PE=4 SV=1	[more]

BLAST of Cla97C02G048050 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C02G048050 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21105.1	1.7e-26	84.62	cytochrome-c oxidases;electron carriers	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR039296	Predicted_CoxVII
IPR039297	COX7a

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C02G048050.1	Cla97C02G048050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039297	Cytochrome c oxidase subunit VII	PFAM	PF02238	COX7a	coord: 12..64 e-value: 3.5E-17 score: 62.4
None	No IPR available	PANTHER	PTHR35308:SF6	SUBFAMILY NOT NAMED	coord: 5..69
IPR039296	Predicted cytochrome c oxidase subunit VII	PANTHER	PTHR35308	FAMILY NOT NAMED	coord: 5..69

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C02G048050	Watermelon (97103) v2	wmbwmbB012
Cla97C02G048050	Watermelon (97103) v2	wmbwmbB047
Cla97C02G048050	Watermelon (97103) v2	wmbwmbB098
Cla97C02G048050	Silver-seed gourd	carwmbB0242
Cla97C02G048050	Silver-seed gourd	carwmbB0255
Cla97C02G048050	Silver-seed gourd	carwmbB0439
Cla97C02G048050	Silver-seed gourd	carwmbB0966
Cla97C02G048050	Cucumber (Gy14) v2	cgybwmbB026
Cla97C02G048050	Cucumber (Gy14) v2	cgybwmbB187
Cla97C02G048050	Cucumber (Gy14) v2	cgybwmbB406
Cla97C02G048050	Cucumber (Gy14) v2	cgybwmbB414
Cla97C02G048050	Cucumber (Gy14) v1	cgywmbB085
Cla97C02G048050	Cucumber (Gy14) v1	cgywmbB427
Cla97C02G048050	Cucumber (Gy14) v1	cgywmbB663
Cla97C02G048050	Cucurbita maxima (Rimu)	cmawmbB255
Cla97C02G048050	Cucurbita maxima (Rimu)	cmawmbB577
Cla97C02G048050	Cucurbita maxima (Rimu)	cmawmbB629
Cla97C02G048050	Cucurbita maxima (Rimu)	cmawmbB680
Cla97C02G048050	Cucurbita maxima (Rimu)	cmawmbB884
Cla97C02G048050	Cucurbita moschata (Rifu)	cmowmbB235
Cla97C02G048050	Cucurbita moschata (Rifu)	cmowmbB557
Cla97C02G048050	Cucurbita moschata (Rifu)	cmowmbB602
Cla97C02G048050	Cucurbita moschata (Rifu)	cmowmbB654
Cla97C02G048050	Cucurbita moschata (Rifu)	cmowmbB854
Cla97C02G048050	Wild cucumber (PI 183967)	cpiwmbB026
Cla97C02G048050	Wild cucumber (PI 183967)	cpiwmbB201
Cla97C02G048050	Wild cucumber (PI 183967)	cpiwmbB450
Cla97C02G048050	Wild cucumber (PI 183967)	cpiwmbB458
Cla97C02G048050	Cucumber (Chinese Long) v3	cucwmbB025
Cla97C02G048050	Cucumber (Chinese Long) v3	cucwmbB198
Cla97C02G048050	Cucumber (Chinese Long) v3	cucwmbB444
Cla97C02G048050	Cucumber (Chinese Long) v3	cucwmbB451
Cla97C02G048050	Cucumber (Chinese Long) v2	cuwmbB026
Cla97C02G048050	Cucumber (Chinese Long) v2	cuwmbB196
Cla97C02G048050	Cucumber (Chinese Long) v2	cuwmbB426
Cla97C02G048050	Cucumber (Chinese Long) v2	cuwmbB434
Cla97C02G048050	Bottle gourd (USVL1VR-Ls)	lsiwmbB052
Cla97C02G048050	Bottle gourd (USVL1VR-Ls)	lsiwmbB124
Cla97C02G048050	Bottle gourd (USVL1VR-Ls)	lsiwmbB227
Cla97C02G048050	Bottle gourd (USVL1VR-Ls)	lsiwmbB228
Cla97C02G048050	Melon (DHL92) v3.6.1	medwmbB085
Cla97C02G048050	Melon (DHL92) v3.6.1	medwmbB314
Cla97C02G048050	Melon (DHL92) v3.6.1	medwmbB520
Cla97C02G048050	Melon (DHL92) v3.5.1	mewmbB091
Cla97C02G048050	Melon (DHL92) v3.5.1	mewmbB326
Cla97C02G048050	Melon (DHL92) v3.5.1	mewmbB528
Cla97C02G048050	Watermelon (Charleston Gray)	wcgwmbB043
Cla97C02G048050	Watermelon (Charleston Gray)	wcgwmbB138
Cla97C02G048050	Watermelon (Charleston Gray)	wcgwmbB197
Cla97C02G048050	Watermelon (97103) v1	wmwmbB062
Cla97C02G048050	Watermelon (97103) v1	wmwmbB287
Cla97C02G048050	Watermelon (97103) v1	wmwmbB316
Cla97C02G048050	Wax gourd	wgowmbB369
Cla97C02G048050	Wax gourd	wgowmbB418