Cla97C02G047460 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C02G047460
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	pentatricopeptide repeat-containing protein At2g28050-like
Location	Cla97Chr02 : 35137272 .. 35137850 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGATTCAAAACCTCCTCAAATCAGTCAAAGCCAATCCTCGATCCAATTCCTCCTCGAAGCCACTCATGGAAATCATTTCAACAATCTTAGCACCGGCATCGTTCGATTCTACTCCGGCATGCTTCATTTCTGAACTCAACCTCCATGTTCTCACTTCCATTCTCTCAAACCCAAATCTTAGATCTTTAGAATGCTTCCATTTCTTCGATTTTTGCCTTAAAAATCAGCCTCTCATGTCCTTCAAACCTGACCTTCAGTCCCATTTGATCGTCATTTGCCGGCTTCTCCAGGCGAGGATGTTCGCCGATGCCGAGATCCTCCTCAAAACTGTGTCAATTGATGGAAATCACCGCTACCCATTTGCTGTTATTGCTTCTAATGTTGAAATTTCTTGTCCAGAATGGAAGGTTAAGGTAAAGTTTTTCAAATTCATGCTTGCGCTGTACTCGGAGAACGGGTTCTTCGACTCTGTTTCTGAAACGTTTAGCTATATGAAGAATAATGGGATTATGATCGACGATCATACTTGTACTGTGCATTTACCATCCCTTAAAGGATCTAACAGACGCATTTAA

mRNA sequence

ATGTCGATTCAAAACCTCCTCAAATCAGTCAAAGCCAATCCTCGATCCAATTCCTCCTCGAAGCCACTCATGGAAATCATTTCAACAATCTTAGCACCGGCATCGTTCGATTCTACTCCGGCATGCTTCATTTCTGAACTCAACCTCCATGTTCTCACTTCCATTCTCTCAAACCCAAATCTTAGATCTTTAGAATGCTTCCATTTCTTCGATTTTTGCCTTAAAAATCAGCCTCTCATGTCCTTCAAACCTGACCTTCAGTCCCATTTGATCGTCATTTGCCGGCTTCTCCAGGCGAGGATGTTCGCCGATGCCGAGATCCTCCTCAAAACTGTGTCAATTGATGGAAATCACCGCTACCCATTTGCTGTTATTGCTTCTAATGTTGAAATTTCTTGTCCAGAATGGAAGGTTAAGGTAAAGTTTTTCAAATTCATGCTTGCGCTGTACTCGGAGAACGGGTTCTTCGACTCTGTTTCTGAAACGTTTAGCTATATGAAGAATAATGGGATTATGATCGACGATCATACTTGTACTGTGCATTTACCATCCCTTAAAGGATCTAACAGACGCATTTAA

Coding sequence (CDS)

ATGTCGATTCAAAACCTCCTCAAATCAGTCAAAGCCAATCCTCGATCCAATTCCTCCTCGAAGCCACTCATGGAAATCATTTCAACAATCTTAGCACCGGCATCGTTCGATTCTACTCCGGCATGCTTCATTTCTGAACTCAACCTCCATGTTCTCACTTCCATTCTCTCAAACCCAAATCTTAGATCTTTAGAATGCTTCCATTTCTTCGATTTTTGCCTTAAAAATCAGCCTCTCATGTCCTTCAAACCTGACCTTCAGTCCCATTTGATCGTCATTTGCCGGCTTCTCCAGGCGAGGATGTTCGCCGATGCCGAGATCCTCCTCAAAACTGTGTCAATTGATGGAAATCACCGCTACCCATTTGCTGTTATTGCTTCTAATGTTGAAATTTCTTGTCCAGAATGGAAGGTTAAGGTAAAGTTTTTCAAATTCATGCTTGCGCTGTACTCGGAGAACGGGTTCTTCGACTCTGTTTCTGAAACGTTTAGCTATATGAAGAATAATGGGATTATGATCGACGATCATACTTGTACTGTGCATTTACCATCCCTTAAAGGATCTAACAGACGCATTTAA

Protein sequence

MSIQNLLKSVKANPRSNSSSKPLMEIISTILAPASFDSTPACFISELNLHVLTSILSNPNLRSLECFHFFDFCLKNQPLMSFKPDLQSHLIVICRLLQARMFADAEILLKTVSIDGNHRYPFAVIASNVEISCPEWKVKVKFFKFMLALYSENGFFDSVSETFSYMKNNGIMIDDHTCTVHLPSLKGSNRRI

Homology

[Close]

BLAST of Cla97C02G047460 vs. NCBI nr
Match: XP_022943381.1 (pentatricopeptide repeat-containing protein At2g28050 [Cucurbita moschata])

HSP 1 Score: 295.8 bits (756), Expect = 1.0e-76
Identity = 154/193 (79.79%), Postives = 166/193 (86.01%), Query Frame = 0


Query: 1   MSIQNL---LKSVKANPRSNSSSKPLMEIISTILAPASFDSTPACFISELNLHVLTSILS 60
           MSI NL   LK+VK N +SN SSKPL EIISTILAPA FDST +CFIS+LN HV TSILS
Sbjct: 1   MSIPNLLKTLKTVKGNCQSNPSSKPLAEIISTILAPAPFDSTESCFISQLNPHVFTSILS 60

Query: 61  NPNLRSLECFHFFDFCLKNQPLMSFKPDLQSHLIVICRLLQARMFADAEILLKTVSIDGN 120
           NPNLRS ECFHFFDFCLKNQPLMSF PDLQ+HL VICRLL+ARMF+DA  LLKTVSIDGN
Sbjct: 61  NPNLRSSECFHFFDFCLKNQPLMSFTPDLQAHLTVICRLLKARMFSDAASLLKTVSIDGN 120

Query: 121 HRYPFAVIASNVEISCPEWKVKVKFFKFMLALYSENGFFDSVSETFSYMKNNGIMIDDHT 180
            RY FA+IAS VE  C E KVKVKFF FMLALYSE+GFFDSVSETFSYMKNNGIMID+ +
Sbjct: 121 LRYSFAIIASTVESCCQERKVKVKFFNFMLALYSESGFFDSVSETFSYMKNNGIMIDEQS 180

Query: 181 CTVHLPSLKGSNR 191
           CTVHL SLKGSN+
Sbjct: 181 CTVHLLSLKGSNQ 193

[Close]

BLAST of Cla97C02G047460 vs. NCBI nr
Match: XP_023511890.1 (pentatricopeptide repeat-containing protein At2g28050 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 294.3 bits (752), Expect = 3.0e-76
Identity = 154/193 (79.79%), Postives = 165/193 (85.49%), Query Frame = 0


Query: 1   MSIQNL---LKSVKANPRSNSSSKPLMEIISTILAPASFDSTPACFISELNLHVLTSILS 60
           MSI NL   LK+VK N +SN SS+PL EIISTILAPA FDST +CFIS+LN  VLTSILS
Sbjct: 1   MSIPNLLKTLKTVKGNRQSNPSSRPLAEIISTILAPAPFDSTVSCFISQLNPRVLTSILS 60

Query: 61  NPNLRSLECFHFFDFCLKNQPLMSFKPDLQSHLIVICRLLQARMFADAEILLKTVSIDGN 120
           NPNLRS ECFHFFDFCLKNQPLMSF PDLQ+HL VICRLL+ARMF+DA  LLKTVSIDGN
Sbjct: 61  NPNLRSSECFHFFDFCLKNQPLMSFTPDLQAHLTVICRLLKARMFSDAASLLKTVSIDGN 120

Query: 121 HRYPFAVIASNVEISCPEWKVKVKFFKFMLALYSENGFFDSVSETFSYMKNNGIMIDDHT 180
            RY FA+IAS VE  C E KVKVKFF FMLALYSENGFFDSVSETFSYMKNNGIMID+  
Sbjct: 121 LRYSFAIIASTVESCCQERKVKVKFFNFMLALYSENGFFDSVSETFSYMKNNGIMIDEQR 180

Query: 181 CTVHLPSLKGSNR 191
           CTVHL SLKGSN+
Sbjct: 181 CTVHLLSLKGSNQ 193

[Close]

BLAST of Cla97C02G047460 vs. NCBI nr
Match: XP_022985570.1 (pentatricopeptide repeat-containing protein At2g28050 [Cucurbita maxima])

HSP 1 Score: 292.7 bits (748), Expect = 8.9e-76
Identity = 152/193 (78.76%), Postives = 165/193 (85.49%), Query Frame = 0


Query: 1   MSIQNL---LKSVKANPRSNSSSKPLMEIISTILAPASFDSTPACFISELNLHVLTSILS 60
           MSI NL   LK+VK N +SN SSKPL+EIISTILAPA F+S  +CFIS+L  HVLTSILS
Sbjct: 1   MSIPNLLKTLKTVKGNRQSNPSSKPLVEIISTILAPAPFNSNESCFISQLKPHVLTSILS 60

Query: 61  NPNLRSLECFHFFDFCLKNQPLMSFKPDLQSHLIVICRLLQARMFADAEILLKTVSIDGN 120
           NPNLRS ECFHFFDFCLKNQPLMSF PDLQ+HL VICRLL+ARMF+DA  LLKTVSIDGN
Sbjct: 61  NPNLRSSECFHFFDFCLKNQPLMSFTPDLQAHLTVICRLLKARMFSDAASLLKTVSIDGN 120

Query: 121 HRYPFAVIASNVEISCPEWKVKVKFFKFMLALYSENGFFDSVSETFSYMKNNGIMIDDHT 180
            RYPFA+IAS VE  C E KVKVKFF FML LYSE GFFDSVSETFSYMKNNGIMID+ +
Sbjct: 121 LRYPFAIIASTVESCCQERKVKVKFFNFMLTLYSEYGFFDSVSETFSYMKNNGIMIDEQS 180

Query: 181 CTVHLPSLKGSNR 191
           CTVHL SLKGSN+
Sbjct: 181 CTVHLLSLKGSNQ 193

[Close]

BLAST of Cla97C02G047460 vs. NCBI nr
Match: XP_022140390.1 (pentatricopeptide repeat-containing protein At2g28050 [Momordica charantia])

HSP 1 Score: 262.3 bits (669), Expect = 1.3e-66
Identity = 140/193 (72.54%), Postives = 156/193 (80.83%), Query Frame = 0


Query: 1   MSIQNL---LKSVKANPRSNSSSKPLMEIISTILAPASFDSTPACFISELNLHVLTSILS 60
           MSIQNL   LK+VK N +SN SSKP++EIISTILAPA  DS     IS+LN H L SILS
Sbjct: 1   MSIQNLLKTLKTVKGNRQSNPSSKPILEIISTILAPAPSDSVATSLISQLNPHGLRSILS 60

Query: 61  NPNLRSLECFHFFDFCLKNQPLMSFKPDLQSHLIVICRLLQARMFADAEILLKTVSIDGN 120
           +PNL S ECFHFFDF LKNQ L+SFKPDLQ+HL VICRLL+ RMF+DAE LLKTVSID N
Sbjct: 61  DPNLGSSECFHFFDFVLKNQSLVSFKPDLQAHLTVICRLLKERMFSDAERLLKTVSIDSN 120

Query: 121 HRYPFAVIASNVEISCPEWKVKVKFFKFMLALYSENGFFDSVSETFSYMKNNGIMIDDHT 180
             YPFAVIAS VE  C E KVKVKFF FM+A+YS NGFFDSVSE FSYMKNNGI ID+ T
Sbjct: 121 CCYPFAVIASTVENCCRERKVKVKFFNFMMAMYSNNGFFDSVSEIFSYMKNNGIKIDEKT 180

Query: 181 CTVHLPSLKGSNR 191
           CTVHL +LKGS++
Sbjct: 181 CTVHLLALKGSDQ 193

[Close]

BLAST of Cla97C02G047460 vs. NCBI nr
Match: XP_021277830.1 (pentatricopeptide repeat-containing protein At2g28050 [Herrania umbratica])

HSP 1 Score: 182.6 bits (462), Expect = 1.3e-42
Identity = 100/195 (51.28%), Postives = 134/195 (68.72%), Query Frame = 0


Query: 1   MSIQNLLKSVKANPRSNSSS------KPLMEIISTILAPASFDSTPACFISELNLHVLTS 60
           M++QN LK++K   +S  S       +PL ++IS IL  +      A  IS+LN      
Sbjct: 1   MTLQNFLKTLKTVKKSYPSGLSSKPYQPLPDLISQILTTSK--PLDASTISDLNPTTFQY 60

Query: 61  ILSNPNLRSLECFHFFDFCLKNQPLMSFKPDLQSHLIVICRLLQARMFADAEILLKTVSI 120
           IL+NP+L++ +CF FF+  +KNQ L+SFKPDLQ+HL + CRLL+AR+F+DAE  LK+VS+
Sbjct: 61  ILTNPDLKASKCFRFFNLVIKNQSLVSFKPDLQAHLTLTCRLLKARLFSDAEATLKSVSV 120

Query: 121 DGNHRYPFAVIASNVEISCPEWKVKVKFFKFMLALYSENGFFDSVSETFSYMKNNGIMID 180
           D + RYPF VIAS VE  C E KV  KF+  ML +YS+NG F  V +TF YMKNNGI ID
Sbjct: 121 DESLRYPFLVIASAVENCCFESKVITKFYNLMLKVYSDNGKFGEVLKTFDYMKNNGIKID 180

Query: 181 DHTCTVHLPSLKGSN 190
           + TCTVHL +LKG++
Sbjct: 181 ERTCTVHLIALKGAD 193

[Close]

BLAST of Cla97C02G047460 vs. TrEMBL
Match: tr|A0A061GX52|A0A061GX52_THECC (Pentatricopeptide repeat-containing protein, putative OS=Theobroma cacao OX=3641 GN=TCM_042124 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.5e-42
Identity = 99/195 (50.77%), Postives = 133/195 (68.21%), Query Frame = 0


Query: 1   MSIQNLLKSVKANPRSNSSS------KPLMEIISTILAPASFDSTPACFISELNLHVLTS 60
           M++QN LK++K   +S  S       +PL + IS  L  +      A  IS+LN      
Sbjct: 95  MTLQNFLKTLKTVKKSYPSGLSSKPYQPLPDFISQFLTTSK--PLDASTISDLNPTTFHD 154

Query: 61  ILSNPNLRSLECFHFFDFCLKNQPLMSFKPDLQSHLIVICRLLQARMFADAEILLKTVSI 120
           IL+NP+L++ +CF FF+  +KNQ L+SFKPDLQ+HL + CRLL+AR+F+DAE +LK+VS+
Sbjct: 155 ILTNPDLKASKCFRFFNLVIKNQSLVSFKPDLQAHLTLTCRLLKARLFSDAEAMLKSVSV 214

Query: 121 DGNHRYPFAVIASNVEISCPEWKVKVKFFKFMLALYSENGFFDSVSETFSYMKNNGIMID 180
           D + RYPF VIAS VE  C E KV  KF+  ML +YS+NG F  V +TF YMKNNGI ID
Sbjct: 215 DESLRYPFLVIASAVENCCFESKVITKFYNLMLKVYSDNGKFGEVLKTFDYMKNNGIKID 274

Query: 181 DHTCTVHLPSLKGSN 190
           + TCTVHL +LKG++
Sbjct: 275 ERTCTVHLIALKGAD 287

[Close]

BLAST of Cla97C02G047460 vs. TrEMBL
Match: tr|A0A0D2QDH4|A0A0D2QDH4_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G110100 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.2e-41
Identity = 98/192 (51.04%), Postives = 129/192 (67.19%), Query Frame = 0


Query: 1   MSIQNLLKSVKANPRSNSSS------KPLMEIISTILAPASFDSTPACFISELNLHVLTS 60
           M++QN L ++K   +S++S+      + L + IS  L PA+     A  +  L       
Sbjct: 1   MTLQNFLNTLKTVKKSSASTLSPKHFQHLPDFISHFLKPAT--PLDASALPSLTPTTFRD 60

Query: 61  ILSNPNLRSLECFHFFDFCLKNQPLMSFKPDLQSHLIVICRLLQARMFADAEILLKTVSI 120
           ILSNP+L++ +CF FF+F   NQ L+SFKP LQ HLI+ICRLL+AR+FADAE +LKT+S+
Sbjct: 61  ILSNPDLKASKCFRFFNFVANNQSLLSFKPHLQDHLILICRLLKARLFADAEAMLKTLSV 120

Query: 121 DGNHRYPFAVIASNVEISCPEWKVKVKFFKFMLALYSENGFFDSVSETFSYMKNNGIMID 180
           D N RYPF VIAS VE  C E KV  K F FML +YS+NG F   S+TF YMK+NGI I+
Sbjct: 121 DENLRYPFLVIASAVENCCFESKVTTKLFNFMLKVYSDNGNFSEASKTFDYMKDNGIKIN 180

Query: 181 DHTCTVHLPSLK 187
           + TCTVHL +LK
Sbjct: 181 ERTCTVHLNTLK 190

[Close]

BLAST of Cla97C02G047460 vs. TrEMBL
Match: tr|A0A1R3HAK7|A0A1R3HAK7_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_20560 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.4e-40
Identity = 102/197 (51.78%), Postives = 130/197 (65.99%), Query Frame = 0


Query: 1   MSIQNL---LKSVKANPRSNSSSKPLMEI---ISTILAPAS--FDSTPACFISELNLHVL 60
           M++QN+   LK+ K    S  SS P   I   IS +LA +    DST    +S+LN    
Sbjct: 1   MTLQNVARTLKTAKGRCPSTLSSNPYQHIPAFISQLLATSKPFNDST----LSDLNPATF 60

Query: 61  TSILSNPNLRSLECFHFFDFCLKNQPLMSFKPDLQSHLIVICRLLQARMFADAEILLKTV 120
             IL+NP+L++ +CFHFFDF LKNQ L+ FKPDLQ+HL +I RLLQAR+F +AE L K+V
Sbjct: 61  HDILANPDLKASKCFHFFDFVLKNQSLVPFKPDLQAHLTLIGRLLQARLFRNAEALFKSV 120

Query: 121 SIDGNHRYPFAVIASNVEISCPEWKVKVKFFKFMLALYSENGFFDSVSETFSYMKNNGIM 180
           S+D N RYPF  IAS VE  C E K+  K F  ML +YS+NG F  V + F YMKN GIM
Sbjct: 121 SVDENFRYPFLDIASAVENCCFEPKIMTKIFNSMLKVYSDNGKFGEVLKVFDYMKNKGIM 180

Query: 181 IDDHTCTVHLPSLKGSN 190
           ID+ TCTVHL +L G++
Sbjct: 181 IDERTCTVHLHALNGAD 193

[Close]

BLAST of Cla97C02G047460 vs. TrEMBL
Match: tr|A0A1U8PQB6|A0A1U8PQB6_GOSHI (pentatricopeptide repeat-containing protein At2g28050-like OS=Gossypium hirsutum OX=3635 GN=LOC107960772 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 5.2e-40
Identity = 98/194 (50.52%), Postives = 128/194 (65.98%), Query Frame = 0


Query: 1   MSIQNLLKSVKANPRSNSSSKP------LMEIISTILAPASFDSTP--ACFISELNLHVL 60
           M++QN L ++K   +S++S+ P      L ++IS  L P    STP  A  +  L     
Sbjct: 1   MTLQNFLNTLKTVKKSSASTLPPKHFQHLPDLISHFLKP----STPLDASALPSLTPTTF 60

Query: 61  TSILSNPNLRSLECFHFFDFCLKNQPLMSFKPDLQSHLIVICRLLQARMFADAEILLKTV 120
             ILSNP+L++ +CF FF+F   NQ L+SFKP LQ HL +I  LL+AR+FADAE +LKT+
Sbjct: 61  RDILSNPDLKASKCFRFFNFVANNQSLLSFKPHLQDHLTLISGLLKARLFADAEAMLKTL 120

Query: 121 SIDGNHRYPFAVIASNVEISCPEWKVKVKFFKFMLALYSENGFFDSVSETFSYMKNNGIM 180
           S+D N RYPF VIAS VE  C E KV  K F FML +YS+NG F   S+TF YMK+NGI 
Sbjct: 121 SVDENLRYPFLVIASAVENCCFESKVTTKLFNFMLKVYSDNGNFSEASKTFDYMKDNGIK 180

Query: 181 IDDHTCTVHLPSLK 187
           I++ TCTVHL +LK
Sbjct: 181 INERTCTVHLNTLK 190

[Close]

BLAST of Cla97C02G047460 vs. TrEMBL
Match: tr|A0A2P5X4S4|A0A2P5X4S4_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA22347 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 5.2e-40
Identity = 98/194 (50.52%), Postives = 128/194 (65.98%), Query Frame = 0


Query: 1   MSIQNLLKSVKANPRSNSSS------KPLMEIISTILAPASFDSTP--ACFISELNLHVL 60
           M++QN L ++K   +S++S+      + L + IS  L P    STP  A  +  L     
Sbjct: 1   MTLQNFLNTLKTVKKSSASTLSPKHFQHLPDFISHFLKP----STPLDASALPSLTPTTF 60

Query: 61  TSILSNPNLRSLECFHFFDFCLKNQPLMSFKPDLQSHLIVICRLLQARMFADAEILLKTV 120
             ILSNP+L++ +CF FF+F   NQ L+SFKP LQ HLI+I RLL+ R+FADAE +LKT+
Sbjct: 61  RDILSNPDLKASKCFRFFNFVANNQSLLSFKPHLQDHLILISRLLKTRLFADAEAMLKTL 120

Query: 121 SIDGNHRYPFAVIASNVEISCPEWKVKVKFFKFMLALYSENGFFDSVSETFSYMKNNGIM 180
           S+D N RYPF VIAS VE  C E KV  K F FML +YS+NG F   S+TF YMK+NGI 
Sbjct: 121 SVDENLRYPFLVIASAVENCCFESKVTTKLFNFMLKVYSDNGNFSEASKTFDYMKDNGIK 180

Query: 181 IDDHTCTVHLPSLK 187
           I++ TCTVHL +LK
Sbjct: 181 INERTCTVHLNTLK 190

[Close]

BLAST of Cla97C02G047460 vs. Swiss-Prot
Match: sp|Q9ZUU7|PP174_ARATH (Pentatricopeptide repeat-containing protein At2g28050 OS=Arabidopsis thaliana OX=3702 GN=At2g28050 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.3e-30
Identity = 82/190 (43.16%), Postives = 117/190 (61.58%), Query Frame = 0


Query: 1   MSIQNLLKSVKANPRSNSSSKPLMEIISTILAPASFDST---PACFISELNLHVLTSILS 60
           M+ Q  LK++K   ++ + S     I   +L  +S + T   P   +S+LNL  L  ILS
Sbjct: 1   MTPQCFLKTLKTAKQTYTFS-----IYKLLLNSSSINQTLASPETPLSDLNLSTLRRILS 60

Query: 61  NPNLRSLECFHFFDFCLKNQPLMSFKPDLQSHLIVICRLLQARMFADAEILLKTVSIDGN 120
           +P+++S +C   F+F L+N  L SF+PDL++HL +  R+L  R F+ A+ LLK V+ID  
Sbjct: 61  DPDIKSWKCISLFNFILENPSLFSFQPDLRTHLSLTFRVLSERRFSYAKELLKPVAIDDI 120

Query: 121 HRYPFAVIASNVEISCP-EWKVKVKFFKFMLALYSENGFFDSVSETFSYMKNNGIMIDDH 180
            RYPF VI S+V   C  E KV  +FF  M+ +YS+NG F  V E F YMKNN + ID+ 
Sbjct: 121 LRYPFNVIVSSVIDECGCEKKVVGRFFNSMIMVYSDNGKFSEVVEVFEYMKNNEVKIDEK 180

Query: 181 TCTVHLPSLK 187
           TCT+HL +LK
Sbjct: 181 TCTLHLLNLK 185

[Close]

BLAST of Cla97C02G047460 vs. TAIR10
Match: AT2G28050.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 133.7 bits (335), Expect = 1.2e-31
Identity = 82/190 (43.16%), Postives = 117/190 (61.58%), Query Frame = 0


Query: 1   MSIQNLLKSVKANPRSNSSSKPLMEIISTILAPASFDST---PACFISELNLHVLTSILS 60
           M+ Q  LK++K   ++ + S     I   +L  +S + T   P   +S+LNL  L  ILS
Sbjct: 1   MTPQCFLKTLKTAKQTYTFS-----IYKLLLNSSSINQTLASPETPLSDLNLSTLRRILS 60

Query: 61  NPNLRSLECFHFFDFCLKNQPLMSFKPDLQSHLIVICRLLQARMFADAEILLKTVSIDGN 120
           +P+++S +C   F+F L+N  L SF+PDL++HL +  R+L  R F+ A+ LLK V+ID  
Sbjct: 61  DPDIKSWKCISLFNFILENPSLFSFQPDLRTHLSLTFRVLSERRFSYAKELLKPVAIDDI 120

Query: 121 HRYPFAVIASNVEISCP-EWKVKVKFFKFMLALYSENGFFDSVSETFSYMKNNGIMIDDH 180
            RYPF VI S+V   C  E KV  +FF  M+ +YS+NG F  V E F YMKNN + ID+ 
Sbjct: 121 LRYPFNVIVSSVIDECGCEKKVVGRFFNSMIMVYSDNGKFSEVVEVFEYMKNNEVKIDEK 180

Query: 181 TCTVHLPSLK 187
           TCT+HL +LK
Sbjct: 181 TCTLHLLNLK 185

The following BLAST results are available for this feature:

BLAST of Cla97C02G047460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943381.1	1.0e-76	79.79	pentatricopeptide repeat-containing protein At2g28050 [Cucurbita moschata]	[more]
XP_023511890.1	3.0e-76	79.79	pentatricopeptide repeat-containing protein At2g28050 [Cucurbita pepo subsp. pep...	[more]
XP_022985570.1	8.9e-76	78.76	pentatricopeptide repeat-containing protein At2g28050 [Cucurbita maxima]	[more]
XP_022140390.1	1.3e-66	72.54	pentatricopeptide repeat-containing protein At2g28050 [Momordica charantia]	[more]
XP_021277830.1	1.3e-42	51.28	pentatricopeptide repeat-containing protein At2g28050 [Herrania umbratica]	[more]

BLAST of Cla97C02G047460 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A061GX52\|A0A061GX52_THECC	1.5e-42	50.77	Pentatricopeptide repeat-containing protein, putative OS=Theobroma cacao OX=3641...	[more]
tr\|A0A0D2QDH4\|A0A0D2QDH4_GOSRA	1.2e-41	51.04	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G110100 PE=4 ...	[more]
tr\|A0A1R3HAK7\|A0A1R3HAK7_COCAP	1.4e-40	51.78	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_20560 PE=4 ...	[more]
tr\|A0A1U8PQB6\|A0A1U8PQB6_GOSHI	5.2e-40	50.52	pentatricopeptide repeat-containing protein At2g28050-like OS=Gossypium hirsutum...	[more]
tr\|A0A2P5X4S4\|A0A2P5X4S4_GOSBA	5.2e-40	50.52	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA22347 PE=4 SV...	[more]

BLAST of Cla97C02G047460 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ZUU7\|PP174_ARATH	2.3e-30	43.16	Pentatricopeptide repeat-containing protein At2g28050 OS=Arabidopsis thaliana OX...	[more]

BLAST of Cla97C02G047460 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G28050.1	1.2e-31	43.16	Pentatricopeptide repeat (PPR) superfamily protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C02G047460.1	Cla97C02G047460.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 48..190 e-value: 3.6E-5 score: 25.1
None	No IPR available	PANTHER	PTHR24015:SF418	SUBFAMILY NOT NAMED	coord: 44..189
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 44..189

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C02G047460	MELO3C009348	Melon (DHL92) v3.5.1	mewmbB326

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C02G047460	Cucurbita maxima (Rimu)	cmawmbB568
Cla97C02G047460	Cucurbita maxima (Rimu)	cmawmbB629
Cla97C02G047460	Cucurbita maxima (Rimu)	cmawmbB679
Cla97C02G047460	Cucurbita maxima (Rimu)	cmawmbB850
Cla97C02G047460	Cucurbita maxima (Rimu)	cmawmbB884
Cla97C02G047460	Cucurbita moschata (Rifu)	cmowmbB208
Cla97C02G047460	Cucurbita moschata (Rifu)	cmowmbB545
Cla97C02G047460	Cucurbita moschata (Rifu)	cmowmbB602
Cla97C02G047460	Cucurbita moschata (Rifu)	cmowmbB652
Cla97C02G047460	Cucurbita moschata (Rifu)	cmowmbB826
Cla97C02G047460	Cucurbita moschata (Rifu)	cmowmbB854
Cla97C02G047460	Wild cucumber (PI 183967)	cpiwmbB200
Cla97C02G047460	Wild cucumber (PI 183967)	cpiwmbB450
Cla97C02G047460	Wild cucumber (PI 183967)	cpiwmbB458
Cla97C02G047460	Cucumber (Chinese Long) v3	cucwmbB197
Cla97C02G047460	Cucumber (Chinese Long) v3	cucwmbB444
Cla97C02G047460	Cucumber (Chinese Long) v3	cucwmbB451
Cla97C02G047460	Cucumber (Chinese Long) v2	cuwmbB195
Cla97C02G047460	Cucumber (Chinese Long) v2	cuwmbB426
Cla97C02G047460	Cucumber (Chinese Long) v2	cuwmbB434
Cla97C02G047460	Bottle gourd (USVL1VR-Ls)	lsiwmbB052
Cla97C02G047460	Bottle gourd (USVL1VR-Ls)	lsiwmbB124
Cla97C02G047460	Bottle gourd (USVL1VR-Ls)	lsiwmbB228
Cla97C02G047460	Bottle gourd (USVL1VR-Ls)	lsiwmbB231
Cla97C02G047460	Melon (DHL92) v3.6.1	medwmbB085
Cla97C02G047460	Melon (DHL92) v3.6.1	medwmbB314
Cla97C02G047460	Melon (DHL92) v3.6.1	medwmbB520
Cla97C02G047460	Melon (DHL92) v3.5.1	mewmbB000
Cla97C02G047460	Melon (DHL92) v3.5.1	mewmbB091
Cla97C02G047460	Melon (DHL92) v3.5.1	mewmbB528
Cla97C02G047460	Watermelon (Charleston Gray)	wcgwmbB043
Cla97C02G047460	Watermelon (Charleston Gray)	wcgwmbB138
Cla97C02G047460	Watermelon (Charleston Gray)	wcgwmbB197
Cla97C02G047460	Watermelon (97103) v1	wmwmbB062
Cla97C02G047460	Watermelon (97103) v1	wmwmbB287
Cla97C02G047460	Watermelon (97103) v1	wmwmbB316
Cla97C02G047460	Wax gourd	wgowmbB031
Cla97C02G047460	Wax gourd	wgowmbB418
Cla97C02G047460	Wax gourd	wgowmbB468
Cla97C02G047460	Watermelon (97103) v2	wmbwmbB047
Cla97C02G047460	Watermelon (97103) v2	wmbwmbB098
Cla97C02G047460	Silver-seed gourd	carwmbB0164
Cla97C02G047460	Silver-seed gourd	carwmbB0255
Cla97C02G047460	Silver-seed gourd	carwmbB0346
Cla97C02G047460	Silver-seed gourd	carwmbB0966
Cla97C02G047460	Cucumber (Gy14) v2	cgybwmbB187
Cla97C02G047460	Cucumber (Gy14) v2	cgybwmbB406
Cla97C02G047460	Cucumber (Gy14) v2	cgybwmbB414
Cla97C02G047460	Cucumber (Gy14) v1	cgywmbB194
Cla97C02G047460	Cucumber (Gy14) v1	cgywmbB530
Cla97C02G047460	Cucumber (Gy14) v1	cgywmbB663