Cla97C02G045980 (gene) Watermelon (97103) v2

Overview
NameCla97C02G045980
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionF22G5.13
LocationCla97Chr02 : 33904283 .. 33904510 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGATGAGGAGTTTTTTTGGGAGGAGCTGCGGCGGAGATCGGACGGCGACTTTCCGGCGGCGGAGGAAGTGTGCTTTTGGGATAAGCTTCTTAATAATGGTAATTTTGAGGAAGTGCTTCTGGTGGAACCGCTTCTGGAAAAGAGTGATTTGGAGGAAGAAGAAGAAGAAGAAGAAGAAGCTGCTGATTCCTTTTTTGAAAGCTTCCATTTTTCTTCCATGTAA

mRNA sequence

ATGGATGATGAGGAGTTTTTTTGGGAGGAGCTGCGGCGGAGATCGGACGGCGACTTTCCGGCGGCGGAGGAAGTGTGCTTTTGGGATAAGCTTCTTAATAATGGTAATTTTGAGGAAGTGCTTCTGGTGGAACCGCTTCTGGAAAAGAGTGATTTGGAGGAAGAAGAAGAAGAAGAAGAAGAAGCTGCTGATTCCTTTTTTGAAAGCTTCCATTTTTCTTCCATGTAA

Coding sequence (CDS)

ATGGATGATGAGGAGTTTTTTTGGGAGGAGCTGCGGCGGAGATCGGACGGCGACTTTCCGGCGGCGGAGGAAGTGTGCTTTTGGGATAAGCTTCTTAATAATGGTAATTTTGAGGAAGTGCTTCTGGTGGAACCGCTTCTGGAAAAGAGTGATTTGGAGGAAGAAGAAGAAGAAGAAGAAGAAGCTGCTGATTCCTTTTTTGAAAGCTTCCATTTTTCTTCCATGTAA

Protein sequence

MDDEEFFWEELRRRSDGDFPAAEEVCFWDKLLNNGNFEEVLLVEPLLEKSDLEEEEEEEEEAADSFFESFHFSSM
Homology
[Close]
BLAST of Cla97C02G045980 vs. NCBI nr
Match: KGN47135.1 (hypothetical protein Csa_6G190260 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 4.0e-08
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 1  MDDEE-FFWEELRRR-SDGDFPAAEE--VCFWDKLLNNGNFEEV 41
          MD+EE FFWEELRRR SDGDFPA EE   CFWDKLL+NGNF EV
Sbjct: 1  MDEEEGFFWEELRRRLSDGDFPAEEEGVCCFWDKLLSNGNFAEV 44

[Close]
BLAST of Cla97C02G045980 vs. TrEMBL
Match: tr|A0A0A0KBR3|A0A0A0KBR3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190260 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.7e-08
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 1  MDDEE-FFWEELRRR-SDGDFPAAEE--VCFWDKLLNNGNFEEV 41
          MD+EE FFWEELRRR SDGDFPA EE   CFWDKLL+NGNF EV
Sbjct: 1  MDEEEGFFWEELRRRLSDGDFPAEEEGVCCFWDKLLSNGNFAEV 44

The following BLAST results are available for this feature:
BLAST of Cla97C02G045980 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47135.14.0e-0879.55hypothetical protein Csa_6G190260 [Cucumis sativus][more]
BLAST of Cla97C02G045980 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KBR3|A0A0A0KBR3_CUCSA2.7e-0879.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190260 PE=4 SV=1[more]
BLAST of Cla97C02G045980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C02G045980 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0016226 iron-sulfur cluster assembly
cellular_component GO:0005575 cellular_component
cellular_component GO:0009570 chloroplast stroma
molecular_function GO:0003674 molecular_function
molecular_function GO:0005506 iron ion binding
molecular_function GO:0051536 iron-sulfur cluster binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C02G045980.1Cla97C02G045980.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..75

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C02G045980Csa6G190260Cucumber (Chinese Long) v2cuwmbB427
Cla97C02G045980ClCG02G019990Watermelon (Charleston Gray)wcgwmbB138
Cla97C02G045980CsaV3_6G016690Cucumber (Chinese Long) v3cucwmbB445
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C02G045980Watermelon (97103) v2wmbwmbB092
Cla97C02G045980Watermelon (97103) v2wmbwmbB106
Cla97C02G045980Silver-seed gourdcarwmbB0089
Cla97C02G045980Silver-seed gourdcarwmbB0165
Cla97C02G045980Silver-seed gourdcarwmbB0346
Cla97C02G045980Silver-seed gourdcarwmbB0403
Cla97C02G045980Silver-seed gourdcarwmbB0466
Cla97C02G045980Silver-seed gourdcarwmbB0693
Cla97C02G045980Silver-seed gourdcarwmbB0960
Cla97C02G045980Silver-seed gourdcarwmbB1052
Cla97C02G045980Cucumber (Gy14) v2cgybwmbB028
Cla97C02G045980Cucumber (Gy14) v2cgybwmbB352
Cla97C02G045980Cucumber (Gy14) v2cgybwmbB407
Cla97C02G045980Cucumber (Gy14) v1cgywmbB172
Cla97C02G045980Cucumber (Gy14) v1cgywmbB233
Cla97C02G045980Cucumber (Gy14) v1cgywmbB291
Cla97C02G045980Cucurbita maxima (Rimu)cmawmbB220
Cla97C02G045980Cucurbita maxima (Rimu)cmawmbB460
Cla97C02G045980Cucurbita maxima (Rimu)cmawmbB568
Cla97C02G045980Cucurbita maxima (Rimu)cmawmbB614
Cla97C02G045980Cucurbita maxima (Rimu)cmawmbB742
Cla97C02G045980Cucurbita maxima (Rimu)cmawmbB743
Cla97C02G045980Cucurbita maxima (Rimu)cmawmbB851
Cla97C02G045980Cucurbita moschata (Rifu)cmowmbB204
Cla97C02G045980Cucurbita moschata (Rifu)cmowmbB442
Cla97C02G045980Cucurbita moschata (Rifu)cmowmbB545
Cla97C02G045980Cucurbita moschata (Rifu)cmowmbB588
Cla97C02G045980Cucurbita moschata (Rifu)cmowmbB715
Cla97C02G045980Cucurbita moschata (Rifu)cmowmbB716
Cla97C02G045980Cucurbita moschata (Rifu)cmowmbB828
Cla97C02G045980Wild cucumber (PI 183967)cpiwmbB027
Cla97C02G045980Wild cucumber (PI 183967)cpiwmbB386
Cla97C02G045980Wild cucumber (PI 183967)cpiwmbB451
Cla97C02G045980Cucumber (Chinese Long) v3cucwmbB026
Cla97C02G045980Cucumber (Chinese Long) v3cucwmbB384
Cla97C02G045980Cucumber (Chinese Long) v2cuwmbB027
Cla97C02G045980Cucumber (Chinese Long) v2cuwmbB369
Cla97C02G045980Bottle gourd (USVL1VR-Ls)lsiwmbB052
Cla97C02G045980Bottle gourd (USVL1VR-Ls)lsiwmbB171
Cla97C02G045980Bottle gourd (USVL1VR-Ls)lsiwmbB276
Cla97C02G045980Melon (DHL92) v3.6.1medwmbB051
Cla97C02G045980Melon (DHL92) v3.6.1medwmbB102
Cla97C02G045980Melon (DHL92) v3.6.1medwmbB138
Cla97C02G045980Melon (DHL92) v3.5.1mewmbB054
Cla97C02G045980Melon (DHL92) v3.5.1mewmbB110
Cla97C02G045980Melon (DHL92) v3.5.1mewmbB150
Cla97C02G045980Watermelon (Charleston Gray)wcgwmbB180
Cla97C02G045980Watermelon (Charleston Gray)wcgwmbB299
Cla97C02G045980Watermelon (97103) v1wmwmbB118
Cla97C02G045980Watermelon (97103) v1wmwmbB155
Cla97C02G045980Watermelon (97103) v1wmwmbB316
Cla97C02G045980Wax gourdwgowmbB368
Cla97C02G045980Wax gourdwgowmbB467