Cla97C02G041300 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C02G041300
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Photosystem II reaction center PsbP family protein
Location	Cla97Chr02 : 29148694 .. 29149014 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTGAGTCGCTGCTTTTCCGGCAGCCGAATGATGAATTTCCGGCGGGGCATAATATCGGCGCAGTCGTCGTCCGACGAACCTGCCGGAAAATCTGCGGCGGAGGAATTCGCCCCGATGGAAGTGACGTTTCGGCGGAGGCTAATTGTTGGGATCGGGTCGGCTTCTCTGGTGGCCGTTGGCGCAAATTTCGCCGGCGTGACGAGCTTTCTACTGGGTTTGTCGCCGGAAAATAATCGGCGTTTGAGAGTTGATGTTATTTATCCAATTGGAGGGTACAGTCGGTGCTTGGATGCCAATGAAGGATTTGGTCAGTAA

mRNA sequence

ATGGCGTTGAGTCGCTGCTTTTCCGGCAGCCGAATGATGAATTTCCGGCGGGGCATAATATCGGCGCAGTCGTCGTCCGACGAACCTGCCGGAAAATCTGCGGCGGAGGAATTCGCCCCGATGGAAGTGACGTTTCGGCGGAGGCTAATTGTTGGGATCGGGTCGGCTTCTCTGGTGGCCGTTGGCGCAAATTTCGCCGGCGTGACGAGCTTTCTACTGGGTTTGTCGCCGGAAAATAATCGGCGTTTGAGAGTTGATGTTATTTATCCAATTGGAGGGTACAGTCGGTGCTTGGATGCCAATGAAGGATTTGGTCAGTAA

Coding sequence (CDS)

ATGGCGTTGAGTCGCTGCTTTTCCGGCAGCCGAATGATGAATTTCCGGCGGGGCATAATATCGGCGCAGTCGTCGTCCGACGAACCTGCCGGAAAATCTGCGGCGGAGGAATTCGCCCCGATGGAAGTGACGTTTCGGCGGAGGCTAATTGTTGGGATCGGGTCGGCTTCTCTGGTGGCCGTTGGCGCAAATTTCGCCGGCGTGACGAGCTTTCTACTGGGTTTGTCGCCGGAAAATAATCGGCGTTTGAGAGTTGATGTTATTTATCCAATTGGAGGGTACAGTCGGTGCTTGGATGCCAATGAAGGATTTGGTCAGTAA

Protein sequence

MALSRCFSGSRMMNFRRGIISAQSSSDEPAGKSAAEEFAPMEVTFRRRLIVGIGSASLVAVGANFAGVTSFLLGLSPENNRRLRVDVIYPIGGYSRCLDANEGFGQ

Homology

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BLAST of Cla97C02G041300 vs. NCBI nr
Match: XP_004144823.1 (PREDICTED: psbP domain-containing protein 7, chloroplastic [Cucumis sativus] >KGN60943.1 hypothetical protein Csa_2G030040 [Cucumis sativus])

HSP 1 Score: 181.0 bits (458), Expect = 2.1e-42
Identity = 89/104 (85.58%), Postives = 97/104 (93.27%), Query Frame = 0


Query: 1   MALSRCFSGSRMMNFRRGIISAQSSSDEPAGKSAAEEFAPMEVTFRRRLIVGIGSASLVA 60
           MA S CFSGS+M+N RR IISAQSSSD+PAGKSAAEEFAP+ VTFRRRLIVGIGSASLVA
Sbjct: 1   MAFSCCFSGSQMINLRRNIISAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVA 60

Query: 61  VGANFAGVTSFLLGLSPENNRRLRVDVIYPIGGYSRCLDANEGF 105
           +GANF GVTSFLLGLSPEN+RRLRVDV+YPIGGYSRC+D NEGF
Sbjct: 61  IGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCIDPNEGF 104

[Close]

BLAST of Cla97C02G041300 vs. NCBI nr
Match: XP_008454371.1 (PREDICTED: psbP domain-containing protein 7, chloroplastic isoform X1 [Cucumis melo] >XP_016901931.1 PREDICTED: psbP domain-containing protein 7, chloroplastic isoform X1 [Cucumis melo] >XP_016901934.1 PREDICTED: psbP domain-containing protein 7, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 180.3 bits (456), Expect = 3.5e-42
Identity = 89/104 (85.58%), Postives = 96/104 (92.31%), Query Frame = 0


Query: 1   MALSRCFSGSRMMNFRRGIISAQSSSDEPAGKSAAEEFAPMEVTFRRRLIVGIGSASLVA 60
           MA SRC SGS+M+NFRR II AQSSSD+PAGKSAAEEFAP+  TFRRRLIVGIGSASLVA
Sbjct: 1   MAFSRCLSGSQMINFRRSIILAQSSSDDPAGKSAAEEFAPLAATFRRRLIVGIGSASLVA 60

Query: 61  VGANFAGVTSFLLGLSPENNRRLRVDVIYPIGGYSRCLDANEGF 105
           VGANFAGVTSFLLGLSPEN+RRLRVDV+YPIGGY+RC D NEGF
Sbjct: 61  VGANFAGVTSFLLGLSPENSRRLRVDVVYPIGGYNRCFDPNEGF 104

[Close]

BLAST of Cla97C02G041300 vs. NCBI nr
Match: XP_008454379.1 (PREDICTED: psbP domain-containing protein 7, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 180.3 bits (456), Expect = 3.5e-42
Identity = 89/104 (85.58%), Postives = 96/104 (92.31%), Query Frame = 0


Query: 1   MALSRCFSGSRMMNFRRGIISAQSSSDEPAGKSAAEEFAPMEVTFRRRLIVGIGSASLVA 60
           MA SRC SGS+M+NFRR II AQSSSD+PAGKSAAEEFAP+  TFRRRLIVGIGSASLVA
Sbjct: 1   MAFSRCLSGSQMINFRRSIILAQSSSDDPAGKSAAEEFAPLAATFRRRLIVGIGSASLVA 60

Query: 61  VGANFAGVTSFLLGLSPENNRRLRVDVIYPIGGYSRCLDANEGF 105
           VGANFAGVTSFLLGLSPEN+RRLRVDV+YPIGGY+RC D NEGF
Sbjct: 61  VGANFAGVTSFLLGLSPENSRRLRVDVVYPIGGYNRCFDPNEGF 104

[Close]

BLAST of Cla97C02G041300 vs. NCBI nr
Match: XP_022937906.1 (psbP domain-containing protein 7, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 172.2 bits (435), Expect = 9.6e-40
Identity = 82/104 (78.85%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 1   MALSRCFSGSRMMNFRRGIISAQSSSDEPAGKSAAEEFAPMEVTFRRRLIVGIGSASLVA 60
           MA +RCF G +MM FRRGI+SAQS S++PAG SAAE+FAP+  TFRRRL VGIGSASLVA
Sbjct: 1   MAFTRCFVGGQMMQFRRGIVSAQSPSEDPAGNSAAEQFAPLAATFRRRLTVGIGSASLVA 60

Query: 61  VGANFAGVTSFLLGLSPENNRRLRVDVIYPIGGYSRCLDANEGF 105
           VGANF GVTSFLLGLSPEN+RRLR+DV+YPIGGYSRC+D NEGF
Sbjct: 61  VGANFGGVTSFLLGLSPENSRRLRLDVVYPIGGYSRCIDTNEGF 104

[Close]

BLAST of Cla97C02G041300 vs. NCBI nr
Match: XP_022937905.1 (psbP domain-containing protein 7, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 172.2 bits (435), Expect = 9.6e-40
Identity = 82/104 (78.85%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 1   MALSRCFSGSRMMNFRRGIISAQSSSDEPAGKSAAEEFAPMEVTFRRRLIVGIGSASLVA 60
           MA +RCF G +MM FRRGI+SAQS S++PAG SAAE+FAP+  TFRRRL VGIGSASLVA
Sbjct: 1   MAFTRCFVGGQMMQFRRGIVSAQSPSEDPAGNSAAEQFAPLAATFRRRLTVGIGSASLVA 60

Query: 61  VGANFAGVTSFLLGLSPENNRRLRVDVIYPIGGYSRCLDANEGF 105
           VGANF GVTSFLLGLSPEN+RRLR+DV+YPIGGYSRC+D NEGF
Sbjct: 61  VGANFGGVTSFLLGLSPENSRRLRLDVVYPIGGYSRCIDTNEGF 104

[Close]

BLAST of Cla97C02G041300 vs. TrEMBL
Match: tr|A0A0A0LGE5|A0A0A0LGE5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G030040 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.4e-42
Identity = 89/104 (85.58%), Postives = 97/104 (93.27%), Query Frame = 0


Query: 1   MALSRCFSGSRMMNFRRGIISAQSSSDEPAGKSAAEEFAPMEVTFRRRLIVGIGSASLVA 60
           MA S CFSGS+M+N RR IISAQSSSD+PAGKSAAEEFAP+ VTFRRRLIVGIGSASLVA
Sbjct: 1   MAFSCCFSGSQMINLRRNIISAQSSSDDPAGKSAAEEFAPLAVTFRRRLIVGIGSASLVA 60

Query: 61  VGANFAGVTSFLLGLSPENNRRLRVDVIYPIGGYSRCLDANEGF 105
           +GANF GVTSFLLGLSPEN+RRLRVDV+YPIGGYSRC+D NEGF
Sbjct: 61  IGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCIDPNEGF 104

[Close]

BLAST of Cla97C02G041300 vs. TrEMBL
Match: tr|A0A1S4E131|A0A1S4E131_CUCME (psbP domain-containing protein 7, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494788 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.3e-42
Identity = 89/104 (85.58%), Postives = 96/104 (92.31%), Query Frame = 0


Query: 1   MALSRCFSGSRMMNFRRGIISAQSSSDEPAGKSAAEEFAPMEVTFRRRLIVGIGSASLVA 60
           MA SRC SGS+M+NFRR II AQSSSD+PAGKSAAEEFAP+  TFRRRLIVGIGSASLVA
Sbjct: 1   MAFSRCLSGSQMINFRRSIILAQSSSDDPAGKSAAEEFAPLAATFRRRLIVGIGSASLVA 60

Query: 61  VGANFAGVTSFLLGLSPENNRRLRVDVIYPIGGYSRCLDANEGF 105
           VGANFAGVTSFLLGLSPEN+RRLRVDV+YPIGGY+RC D NEGF
Sbjct: 61  VGANFAGVTSFLLGLSPENSRRLRVDVVYPIGGYNRCFDPNEGF 104

[Close]

BLAST of Cla97C02G041300 vs. TrEMBL
Match: tr|A0A1S3BYG5|A0A1S3BYG5_CUCME (psbP domain-containing protein 7, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494788 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.3e-42
Identity = 89/104 (85.58%), Postives = 96/104 (92.31%), Query Frame = 0


Query: 1   MALSRCFSGSRMMNFRRGIISAQSSSDEPAGKSAAEEFAPMEVTFRRRLIVGIGSASLVA 60
           MA SRC SGS+M+NFRR II AQSSSD+PAGKSAAEEFAP+  TFRRRLIVGIGSASLVA
Sbjct: 1   MAFSRCLSGSQMINFRRSIILAQSSSDDPAGKSAAEEFAPLAATFRRRLIVGIGSASLVA 60

Query: 61  VGANFAGVTSFLLGLSPENNRRLRVDVIYPIGGYSRCLDANEGF 105
           VGANFAGVTSFLLGLSPEN+RRLRVDV+YPIGGY+RC D NEGF
Sbjct: 61  VGANFAGVTSFLLGLSPENSRRLRVDVVYPIGGYNRCFDPNEGF 104

[Close]

BLAST of Cla97C02G041300 vs. TrEMBL
Match: tr|W9QGT7|W9QGT7_9ROSA (PsbP-like protein 1 OS=Morus notabilis OX=981085 GN=L484_013529 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.9e-28
Identity = 69/110 (62.73%), Postives = 85/110 (77.27%), Query Frame = 0


Query: 1   MALSRCFSGSRMMNFRRGIISAQSS------SDEPAGKSAAEEFAPMEVTFRRRLIVGIG 60
           MAL+RCF   +  +F + I   QSS      S+E A + AAE+FAP+  TFRRRL+VG+G
Sbjct: 1   MALARCFHACKAPSFHK-IRMTQSSGDRKERSEEAASQPAAEQFAPLAATFRRRLLVGLG 60

Query: 61  SASLVAVGANFAGVTSFLLGLSPENNRRLRVDVIYPIGGYSRCLDANEGF 105
           SASLVAVGANFAGVTSFLLGLSPE +R L++DV+YPI GY+RC+D NEGF
Sbjct: 61  SASLVAVGANFAGVTSFLLGLSPETSRNLKLDVVYPIDGYNRCIDTNEGF 109

[Close]

BLAST of Cla97C02G041300 vs. TrEMBL
Match: tr|V4TAP0|V4TAP0_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002020mg PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 6.8e-26
Identity = 68/115 (59.13%), Postives = 81/115 (70.43%), Query Frame = 0


Query: 1   MALSR-CFSGSRMMNFRRGIISAQSSSDEP---------AGKSAAEEFAPMEVTFRRRLI 60
           MAL R CF   R  +  + +   QSS+D            GKS AEEFAP+   F RRL+
Sbjct: 1   MALQRYCFHTCRNASSHK-VYMTQSSNDRKESLQDVSARPGKSPAEEFAPLAAKFNRRLL 60

Query: 61  VGIGSASLVAVGANFAGVTSFLLGLSPENNRRLRVDVIYPIGGYSRCLDANEGFG 106
           VG+G+ASLVAVGANF GVTSFLLGLSPE+ R L++DV+YPIGGYSRC+D NEGFG
Sbjct: 61  VGVGTASLVAVGANFGGVTSFLLGLSPESGRNLKLDVLYPIGGYSRCIDINEGFG 114

[Close]

BLAST of Cla97C02G041300 vs. Swiss-Prot
Match: sp|F4J7A7|PPD7_ARATH (PsbP domain-containing protein 7, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD7 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.0e-21
Identity = 51/101 (50.50%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 4   SRCFSGSRMMNFRRGIISAQSSSDEPAGKSAAEEFAPMEVTFRRRLIVGIGSASLVAVGA 63
           S  +S    +     +I+ Q S D     + AEEF+P+   F RRL++G+GS+S++A+GA
Sbjct: 8   SLLYSSPTNVKLSNFLIAQQPSGD--LKTTPAEEFSPLVEKFNRRLLLGVGSSSVLAIGA 67

Query: 64  NFAGVTSFLLGLSPENNRRLRVDVIYPIGGYSRCLDANEGF 105
           NF G TSF+LGLSP   R L++DVIYPIGGYSRC+D  EGF
Sbjct: 68  NFGGTTSFILGLSPGIGRNLKLDVIYPIGGYSRCIDTVEGF 106

[Close]

BLAST of Cla97C02G041300 vs. TAIR10
Match: AT3G05410.2 (Photosystem II reaction center PsbP family protein)

HSP 1 Score: 102.1 bits (253), Expect = 2.2e-22
Identity = 51/101 (50.50%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 4   SRCFSGSRMMNFRRGIISAQSSSDEPAGKSAAEEFAPMEVTFRRRLIVGIGSASLVAVGA 63
           S  +S    +     +I+ Q S D     + AEEF+P+   F RRL++G+GS+S++A+GA
Sbjct: 8   SLLYSSPTNVKLSNFLIAQQPSGD--LKTTPAEEFSPLVEKFNRRLLLGVGSSSVLAIGA 67

Query: 64  NFAGVTSFLLGLSPENNRRLRVDVIYPIGGYSRCLDANEGF 105
           NF G TSF+LGLSP   R L++DVIYPIGGYSRC+D  EGF
Sbjct: 68  NFGGTTSFILGLSPGIGRNLKLDVIYPIGGYSRCIDTVEGF 106

The following BLAST results are available for this feature:

BLAST of Cla97C02G041300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144823.1	2.1e-42	85.58	PREDICTED: psbP domain-containing protein 7, chloroplastic [Cucumis sativus] >KG...	[more]
XP_008454371.1	3.5e-42	85.58	PREDICTED: psbP domain-containing protein 7, chloroplastic isoform X1 [Cucumis m...	[more]
XP_008454379.1	3.5e-42	85.58	PREDICTED: psbP domain-containing protein 7, chloroplastic isoform X2 [Cucumis m...	[more]
XP_022937906.1	9.6e-40	78.85	psbP domain-containing protein 7, chloroplastic isoform X2 [Cucurbita moschata]	[more]
XP_022937905.1	9.6e-40	78.85	psbP domain-containing protein 7, chloroplastic isoform X1 [Cucurbita moschata]	[more]

BLAST of Cla97C02G041300 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LGE5\|A0A0A0LGE5_CUCSA	1.4e-42	85.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G030040 PE=4 SV=1	[more]
tr\|A0A1S4E131\|A0A1S4E131_CUCME	2.3e-42	85.58	psbP domain-containing protein 7, chloroplastic isoform X1 OS=Cucumis melo OX=36...	[more]
tr\|A0A1S3BYG5\|A0A1S3BYG5_CUCME	2.3e-42	85.58	psbP domain-containing protein 7, chloroplastic isoform X2 OS=Cucumis melo OX=36...	[more]
tr\|W9QGT7\|W9QGT7_9ROSA	1.9e-28	62.73	PsbP-like protein 1 OS=Morus notabilis OX=981085 GN=L484_013529 PE=4 SV=1	[more]
tr\|V4TAP0\|V4TAP0_9ROSI	6.8e-26	59.13	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002020mg PE=4 ...	[more]

BLAST of Cla97C02G041300 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|F4J7A7\|PPD7_ARATH	4.0e-21	50.50	PsbP domain-containing protein 7, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cla97C02G041300 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05410.2	2.2e-22	50.50	Photosystem II reaction center PsbP family protein	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009654	photosystem II oxygen evolving complex
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C02G041300.1	Cla97C02G041300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 21..104
None	No IPR available	PANTHER	PTHR31407:SF16	PSBP DOMAIN-CONTAINING PROTEIN 7, CHLOROPLASTIC	coord: 21..104

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C02G041300	Silver-seed gourd	carwmbB0746
Cla97C02G041300	Silver-seed gourd	carwmbB0777
Cla97C02G041300	Cucumber (Gy14) v2	cgybwmbB114
Cla97C02G041300	Cucumber (Gy14) v1	cgywmbB100
Cla97C02G041300	Cucumber (Chinese Long) v2	cuwmbB118
Cla97C02G041300	Cucurbita maxima (Rimu)	cmawmbB175
Cla97C02G041300	Cucurbita maxima (Rimu)	cmawmbB810
Cla97C02G041300	Cucurbita maxima (Rimu)	cmawmbB812
Cla97C02G041300	Cucurbita moschata (Rifu)	cmowmbB161
Cla97C02G041300	Cucurbita moschata (Rifu)	cmowmbB785
Cla97C02G041300	Cucurbita moschata (Rifu)	cmowmbB786
Cla97C02G041300	Wild cucumber (PI 183967)	cpiwmbB120
Cla97C02G041300	Cucumber (Chinese Long) v3	cucwmbB123
Cla97C02G041300	Bottle gourd (USVL1VR-Ls)	lsiwmbB087
Cla97C02G041300	Melon (DHL92) v3.6.1	medwmbB367
Cla97C02G041300	Melon (DHL92) v3.5.1	mewmbB376
Cla97C02G041300	Watermelon (Charleston Gray)	wcgwmbB138
Cla97C02G041300	Watermelon (97103) v1	wmwmbB316
Cla97C02G041300	Wax gourd	wgowmbB130