Cla97C02G040500 (gene) Watermelon (97103) v2

Overview
NameCla97C02G040500
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr02 : 28431023 .. 28431274 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGACAGAATGAAACCAAAAGAACCAACAGAAGAAGAGAAATCAAAAGGGGTTTGGAATCCAAAGTTCCAACCAGAAGATTTCATTGAAGATAATGGAAATTACAACAACAAATCCAACATCAATCTTCAACTAGCAGCTGCTTCATCTTCAAAAACAAAACAGAGCAATGAAAAGAGAGAAGAACAAGAAGATAAAGACAAGGTAGGAAAAGGAAAAAATGGGCTTAACCTTAATCTCTCTCTTTGA

mRNA sequence

ATGAGAGACAGAATGAAACCAAAAGAACCAACAGAAGAAGAGAAATCAAAAGGGGTTTGGAATCCAAAGTTCCAACCAGAAGATTTCATTGAAGATAATGGAAATTACAACAACAAATCCAACATCAATCTTCAACTAGCAGCTGCTTCATCTTCAAAAACAAAACAGAGCAATGAAAAGAGAGAAGAACAAGAAGATAAAGACAAGGTAGGAAAAGGAAAAAATGGGCTTAACCTTAATCTCTCTCTTTGA

Coding sequence (CDS)

ATGAGAGACAGAATGAAACCAAAAGAACCAACAGAAGAAGAGAAATCAAAAGGGGTTTGGAATCCAAAGTTCCAACCAGAAGATTTCATTGAAGATAATGGAAATTACAACAACAAATCCAACATCAATCTTCAACTAGCAGCTGCTTCATCTTCAAAAACAAAACAGAGCAATGAAAAGAGAGAAGAACAAGAAGATAAAGACAAGGTAGGAAAAGGAAAAAATGGGCTTAACCTTAATCTCTCTCTTTGA

Protein sequence

MRDRMKPKEPTEEEKSKGVWNPKFQPEDFIEDNGNYNNKSNINLQLAAASSSKTKQSNEKREEQEDKDKVGKGKNGLNLNLSL
Homology
[Close]
BLAST of Cla97C02G040500 vs. NCBI nr
Match: KGN61024.1 (hypothetical protein Csa_2G034770 [Cucumis sativus])

HSP 1 Score: 53.1 bits (126), Expect = 5.1e-04
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 1  MRDRMK-PKEPTEEEKSKGVWNPKFQPEDFIEDNG 35
          MRD MK  KE TEEEKSKGVWNPKFQPEDF E++G
Sbjct: 35 MRDGMKYSKELTEEEKSKGVWNPKFQPEDFNEEDG 69

[Close]
BLAST of Cla97C02G040500 vs. TrEMBL
Match: tr|A0A0A0LJ23|A0A0A0LJ23_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034770 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.4e-04
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 1  MRDRMK-PKEPTEEEKSKGVWNPKFQPEDFIEDNG 35
          MRD MK  KE TEEEKSKGVWNPKFQPEDF E++G
Sbjct: 35 MRDGMKYSKELTEEEKSKGVWNPKFQPEDFNEEDG 69

The following BLAST results are available for this feature:
BLAST of Cla97C02G040500 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61024.15.1e-0480.00hypothetical protein Csa_2G034770 [Cucumis sativus][more]
BLAST of Cla97C02G040500 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LJ23|A0A0A0LJ23_CUCSA3.4e-0480.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034770 PE=4 SV=1[more]
BLAST of Cla97C02G040500 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C02G040500 vs. TAIR10
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0010112regulation of systemic acquired resistance
Vocabulary: INTERPRO
TermDefinition
IPR034578NIMIN-1
IPR031425NPR1/NH1-interacting
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010112 regulation of systemic acquired resistance
biological_process GO:0006355 regulation of transcription, DNA-templated
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C02G040500.1Cla97C02G040500.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031425NPR1/NH1-interacting proteinPFAMPF15699NPR1_interactcoord: 4..80
e-value: 2.7E-9
score: 37.5
IPR031425NPR1/NH1-interacting proteinPANTHERPTHR33669FAMILY NOT NAMEDcoord: 9..83
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..73
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..83
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..54
IPR034578Protein NIM1-INTERACTING 1PANTHERPTHR33669:SF9PROTEIN NIM1-INTERACTING 1coord: 9..83

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C02G040500Watermelon (97103) v2wmbwmbB104
Cla97C02G040500Silver-seed gourdcarwmbB0068
Cla97C02G040500Silver-seed gourdcarwmbB0588
Cla97C02G040500Cucumber (Gy14) v2cgybwmbB114
Cla97C02G040500Cucumber (Gy14) v1cgywmbB100
Cla97C02G040500Cucumber (Chinese Long) v2cuwmbB118
Cla97C02G040500Cucurbita maxima (Rimu)cmawmbB363
Cla97C02G040500Cucurbita maxima (Rimu)cmawmbB810
Cla97C02G040500Cucurbita moschata (Rifu)cmowmbB347
Cla97C02G040500Cucurbita moschata (Rifu)cmowmbB785
Cla97C02G040500Wild cucumber (PI 183967)cpiwmbB120
Cla97C02G040500Cucumber (Chinese Long) v3cucwmbB123
Cla97C02G040500Bottle gourd (USVL1VR-Ls)lsiwmbB011
Cla97C02G040500Bottle gourd (USVL1VR-Ls)lsiwmbB087
Cla97C02G040500Melon (DHL92) v3.6.1medwmbB228
Cla97C02G040500Melon (DHL92) v3.6.1medwmbB367
Cla97C02G040500Melon (DHL92) v3.5.1mewmbB242
Cla97C02G040500Melon (DHL92) v3.5.1mewmbB376
Cla97C02G040500Watermelon (Charleston Gray)wcgwmbB138
Cla97C02G040500Watermelon (Charleston Gray)wcgwmbB261
Cla97C02G040500Watermelon (97103) v1wmwmbB316
Cla97C02G040500Wax gourdwgowmbB130