Cla97C02G038030 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C02G038030
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	F-box protein family
Location	Cla97Chr02 : 25196520 .. 25197000 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGGTGCCACGTGGCAAATAGAGCTTGCTTTTTGTGCTTCTTTTCTCCGCCCCTTTTGTTACAACACCACAAGCTTCTTCGAATTTGAAATACGAAGTGGAGAGCAGAGGATCGTAACGGATTCGGCTGCTGTGTGGTCGGAGGGGATGGAGGTGGAGCCGGAGATTGATCGCTTGCCGATTGATCTACTGGCTGACATTTTTGCGACGATAACGTACTTCACCGATTTGGCTCAGTAATTGATTCTTGATTAATGTTTTTTCTTCCCCTTCAATTGCTCTGGTTGTTGTTCTTTCTAGGGTTTCTGCGATTGTGGAAAAACGCAGGGTGTGCGGGGTTTGTAAGAAATGGAATGAAGGAGTTAAAATGTCTATTGGTAGAAGAAAGAGTTTGAGCTTTGCTGGTTGGAAGATGGATGGTTTCTCCACTGCTCGCCTTATTCGCCATGAATACAGCCTTCGAGAGCTCGACATGTAA

mRNA sequence

ATGATTGGTGCCACGTGGCAAATAGAGCTTGCTTTTTGTGCTTCTTTTCTCCGCCCCTTTTGTTACAACACCACAAGCTTCTTCGAATTTGAAATACGAAGTGGAGAGCAGAGGATCGTAACGGATTCGGCTGCTGTGTGGTCGGAGGGGATGGAGGTGGAGCCGGAGATTGATCGCTTGCCGATTGATCTACTGGCTGACATTTTTGCGACGATAACGGTTTCTGCGATTGTGGAAAAACGCAGGGTGTGCGGGGTTTGTAAGAAATGGAATGAAGGAGTTAAAATGTCTATTGGTAGAAGAAAGAGTTTGAGCTTTGCTGGTTGGAAGATGGATGGTTTCTCCACTGCTCGCCTTATTCGCCATGAATACAGCCTTCGAGAGCTCGACATGTAA

Coding sequence (CDS)

ATGATTGGTGCCACGTGGCAAATAGAGCTTGCTTTTTGTGCTTCTTTTCTCCGCCCCTTTTGTTACAACACCACAAGCTTCTTCGAATTTGAAATACGAAGTGGAGAGCAGAGGATCGTAACGGATTCGGCTGCTGTGTGGTCGGAGGGGATGGAGGTGGAGCCGGAGATTGATCGCTTGCCGATTGATCTACTGGCTGACATTTTTGCGACGATAACGGTTTCTGCGATTGTGGAAAAACGCAGGGTGTGCGGGGTTTGTAAGAAATGGAATGAAGGAGTTAAAATGTCTATTGGTAGAAGAAAGAGTTTGAGCTTTGCTGGTTGGAAGATGGATGGTTTCTCCACTGCTCGCCTTATTCGCCATGAATACAGCCTTCGAGAGCTCGACATGTAA

Protein sequence

MIGATWQIELAFCASFLRPFCYNTTSFFEFEIRSGEQRIVTDSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLIRHEYSLRELDM

Homology

[Close]

BLAST of Cla97C02G038030 vs. NCBI nr
Match: XP_022927966.1 (F-box protein At5g67140-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 142.5 bits (358), Expect = 1.0e-30
Identity = 71/111 (63.96%), Postives = 87/111 (78.38%), Query Frame = 0


Query: 22  YNTTS-FFEFEIRSGEQRIVTDSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEK 81
           Y+T   FF+ ++R GE R   DSAAVW+ GM+ EPEIDRLPIDLLA IFA IT  +  + 
Sbjct: 3   YDTADFFFQIDMRRGEGRRRMDSAAVWAVGMDFEPEIDRLPIDLLAHIFAMIT--SFTDL 62

Query: 82  RRVCGVCKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLIRHEYSLRELDM 132
            + CGVC+KW EGVK+S+GR++SLSFAGWKMD  STARLIRH YSLR+LD+
Sbjct: 63  AQACGVCRKWKEGVKLSLGRKESLSFAGWKMDDDSTARLIRHAYSLRDLDI 111

[Close]

BLAST of Cla97C02G038030 vs. NCBI nr
Match: XP_022985881.1 (F-box protein At5g67140-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 138.7 bits (348), Expect = 1.5e-29
Identity = 69/108 (63.89%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 24  TTSFFEFEIRSGEQRIVTDSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEKRRV 83
           T  FF+ ++R GE R   DSA VW+ GME EPEIDRLPIDLLA IFA IT  +  +  + 
Sbjct: 6   TDFFFQIDMRRGEGRRRMDSADVWAVGMEFEPEIDRLPIDLLAHIFAMIT--SFTDLAQA 65

Query: 84  CGVCKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLIRHEYSLRELDM 132
           CGVC+KW EGVK+S+GR++SLSFAGWKMD  STARLI H YSLR+LD+
Sbjct: 66  CGVCRKWKEGVKLSLGRKESLSFAGWKMDDDSTARLICHAYSLRDLDI 111

[Close]

BLAST of Cla97C02G038030 vs. NCBI nr
Match: XP_023512668.1 (F-box protein At5g67140-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023512669.1 F-box protein At5g67140-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 138.3 bits (347), Expect = 1.9e-29
Identity = 69/111 (62.16%), Postives = 85/111 (76.58%), Query Frame = 0


Query: 22  YNTTS-FFEFEIRSGEQRIVTDSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEK 81
           Y+T   FF+  +R GE R   DSAAVW+ GM+ +PEIDRLPIDLLA IFA IT  +  + 
Sbjct: 3   YDTADFFFQIHMRRGEGRRRMDSAAVWAVGMDFDPEIDRLPIDLLAHIFAMIT--SFTDL 62

Query: 82  RRVCGVCKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLIRHEYSLRELDM 132
            + C VC+KW EGVK+S+GR++SLSFAGWKMD  STARLIRH YSLR+LD+
Sbjct: 63  AQACAVCRKWKEGVKLSLGRKESLSFAGWKMDDDSTARLIRHAYSLRDLDI 111

[Close]

BLAST of Cla97C02G038030 vs. NCBI nr
Match: XP_022927967.1 (F-box protein At5g67140-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 136.3 bits (342), Expect = 7.2e-29
Identity = 67/100 (67.00%), Postives = 80/100 (80.00%), Query Frame = 0


Query: 32  IRSGEQRIVTDSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWN 91
           +R GE R   DSAAVW+ GM+ EPEIDRLPIDLLA IFA IT  +  +  + CGVC+KW 
Sbjct: 1   MRRGEGRRRMDSAAVWAVGMDFEPEIDRLPIDLLAHIFAMIT--SFTDLAQACGVCRKWK 60

Query: 92  EGVKMSIGRRKSLSFAGWKMDGFSTARLIRHEYSLRELDM 132
           EGVK+S+GR++SLSFAGWKMD  STARLIRH YSLR+LD+
Sbjct: 61  EGVKLSLGRKESLSFAGWKMDDDSTARLIRHAYSLRDLDI 98

[Close]

BLAST of Cla97C02G038030 vs. NCBI nr
Match: XP_004149695.1 (PREDICTED: F-box protein At5g67140-like [Cucumis sativus] >KGN61981.1 hypothetical protein Csa_2G279180 [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 4.7e-28
Identity = 66/90 (73.33%), Postives = 74/90 (82.22%), Query Frame = 0


Query: 42  DSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRR 101
           DSA VWS  ME+EPEIDRLPIDLLA IFA IT  +  +  + CGVC+KW EGVK+S+GRR
Sbjct: 5   DSAVVWSVEMELEPEIDRLPIDLLAHIFAMIT--SFTDLAQACGVCRKWKEGVKLSLGRR 64

Query: 102 KSLSFAGWKMDGFSTARLIRHEYSLRELDM 132
           KSLSFAGWKMD  STARLIRH YSLRELD+
Sbjct: 65  KSLSFAGWKMDDNSTARLIRHAYSLRELDI 92

[Close]

BLAST of Cla97C02G038030 vs. TrEMBL
Match: tr|A0A0A0LPU5|A0A0A0LPU5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G279180 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.1e-28
Identity = 66/90 (73.33%), Postives = 74/90 (82.22%), Query Frame = 0


Query: 42  DSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRR 101
           DSA VWS  ME+EPEIDRLPIDLLA IFA IT  +  +  + CGVC+KW EGVK+S+GRR
Sbjct: 5   DSAVVWSVEMELEPEIDRLPIDLLAHIFAMIT--SFTDLAQACGVCRKWKEGVKLSLGRR 64

Query: 102 KSLSFAGWKMDGFSTARLIRHEYSLRELDM 132
           KSLSFAGWKMD  STARLIRH YSLRELD+
Sbjct: 65  KSLSFAGWKMDDNSTARLIRHAYSLRELDI 92

[Close]

BLAST of Cla97C02G038030 vs. TrEMBL
Match: tr|A0A1S4E1P2|A0A1S4E1P2_CUCME (F-box protein At5g67140 OS=Cucumis melo OX=3656 GN=LOC103497375 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.5e-27
Identity = 65/90 (72.22%), Postives = 73/90 (81.11%), Query Frame = 0


Query: 42  DSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRR 101
           DS  VWS  ME+EPEIDRLPIDLLA IFA IT  +  +  + CGVC+KW EGVK+S+GRR
Sbjct: 2   DSDVVWSVEMELEPEIDRLPIDLLAHIFAMIT--SFTDLAQACGVCRKWKEGVKLSLGRR 61

Query: 102 KSLSFAGWKMDGFSTARLIRHEYSLRELDM 132
           KSLSFAGWKMD  STARLIRH YSLRELD+
Sbjct: 62  KSLSFAGWKMDDNSTARLIRHAYSLRELDI 89

[Close]

BLAST of Cla97C02G038030 vs. TrEMBL
Match: tr|A0A0A0LLU1|A0A0A0LLU1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G279172 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.1e-20
Identity = 55/80 (68.75%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 51  MEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRRKSLSFAGWK 110
           ME   EIDRLPIDLLA IFA IT  + + + R  GVC++W +GVKMSIGRRKSLSFAGWK
Sbjct: 1   MESAVEIDRLPIDLLAHIFAMITYFSDLAQAR--GVCRRWKDGVKMSIGRRKSLSFAGWK 60

Query: 111 MDGFSTARLIRHEYSLRELD 131
           ++  STA LIRHE+SLRELD
Sbjct: 61  LEDDSTAHLIRHEHSLRELD 78

[Close]

BLAST of Cla97C02G038030 vs. TrEMBL
Match: tr|W9SXB4|W9SXB4_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_001772 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.5e-19
Identity = 52/81 (64.20%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 51  MEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRRKSLSFAGWK 110
           ME E EIDRLPIDLLA IFA IT  +  +  +   VC+KW +GVK S+GRR++LSFAGWK
Sbjct: 1   MEGEAEIDRLPIDLLAHIFAMIT--SFTDLAQASSVCRKWKKGVKQSLGRRENLSFAGWK 60

Query: 111 MDGFSTARLIRHEYSLRELDM 132
           MD  STARL+RH YSL+ELD+
Sbjct: 61  MDDDSTARLVRHAYSLKELDI 79

[Close]

BLAST of Cla97C02G038030 vs. TrEMBL
Match: tr|A0A2P6RNP4|A0A2P6RNP4_ROSCH (Putative F-box domain, leucine-rich repeat domain, L domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0105951 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.4e-19
Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 51  MEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRRKSLSFAGWK 110
           ME E EIDRLP+DLLA+IF  IT  +  +  +  GVC+KW +GVK S+GRR SLSFAGWK
Sbjct: 1   MEGEAEIDRLPLDLLANIFVLIT--SFTDLAQASGVCRKWKQGVKQSLGRRDSLSFAGWK 60

Query: 111 MDGFSTARLIRHEYSLRELDM 132
           MD  STARL+R+ YSLR+LD+
Sbjct: 61  MDDDSTARLLRYAYSLRDLDI 79

[Close]

BLAST of Cla97C02G038030 vs. Swiss-Prot
Match: sp|Q9FH99|FB302_ARATH (F-box protein At5g67140 OS=Arabidopsis thaliana OX=3702 GN=At5g67140 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.4e-15
Identity = 41/81 (50.62%), Postives = 57/81 (70.37%), Query Frame = 0


Query: 51  MEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRRKSLSFAGWK 110
           M+ E  IDRLP+DLLA IF+  T   ++   +  GVCKKW + V  S+ RR++LSFAGWK
Sbjct: 1   MDEEAAIDRLPLDLLAYIFSLATSFTVL--AQASGVCKKWRKAVNQSMARRETLSFAGWK 60

Query: 111 MDGFSTARLIRHEYSLRELDM 132
           MD  ST+RL+   ++L+ELD+
Sbjct: 61  MDDDSTSRLVHLAFNLKELDI 79

[Close]

BLAST of Cla97C02G038030 vs. TAIR10
Match: AT5G67140.1 (F-box/RNI-like superfamily protein)

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-16
Identity = 41/81 (50.62%), Postives = 57/81 (70.37%), Query Frame = 0


Query: 51  MEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRRKSLSFAGWK 110
           M+ E  IDRLP+DLLA IF+  T   ++   +  GVCKKW + V  S+ RR++LSFAGWK
Sbjct: 1   MDEEAAIDRLPLDLLAYIFSLATSFTVL--AQASGVCKKWRKAVNQSMARRETLSFAGWK 60

Query: 111 MDGFSTARLIRHEYSLRELDM 132
           MD  ST+RL+   ++L+ELD+
Sbjct: 61  MDDDSTSRLVHLAFNLKELDI 79

The following BLAST results are available for this feature:

BLAST of Cla97C02G038030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022927966.1	1.0e-30	63.96	F-box protein At5g67140-like isoform X1 [Cucurbita moschata]	[more]
XP_022985881.1	1.5e-29	63.89	F-box protein At5g67140-like isoform X1 [Cucurbita maxima]	[more]
XP_023512668.1	1.9e-29	62.16	F-box protein At5g67140-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_0235126...	[more]
XP_022927967.1	7.2e-29	67.00	F-box protein At5g67140-like isoform X2 [Cucurbita moschata]	[more]
XP_004149695.1	4.7e-28	73.33	PREDICTED: F-box protein At5g67140-like [Cucumis sativus] >KGN61981.1 hypothetic...	[more]

BLAST of Cla97C02G038030 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LPU5\|A0A0A0LPU5_CUCSA	3.1e-28	73.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G279180 PE=4 SV=1	[more]
tr\|A0A1S4E1P2\|A0A1S4E1P2_CUCME	1.5e-27	72.22	F-box protein At5g67140 OS=Cucumis melo OX=3656 GN=LOC103497375 PE=4 SV=1	[more]
tr\|A0A0A0LLU1\|A0A0A0LLU1_CUCSA	4.1e-20	68.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G279172 PE=4 SV=1	[more]
tr\|W9SXB4\|W9SXB4_9ROSA	1.5e-19	64.20	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_001772 PE=4 SV=1	[more]
tr\|A0A2P6RNP4\|A0A2P6RNP4_ROSCH	3.4e-19	62.96	Putative F-box domain, leucine-rich repeat domain, L domain-containing protein O...	[more]

BLAST of Cla97C02G038030 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FH99\|FB302_ARATH	2.4e-15	50.62	F-box protein At5g67140 OS=Arabidopsis thaliana OX=3702 GN=At5g67140 PE=2 SV=1	[more]

BLAST of Cla97C02G038030 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G67140.1	1.3e-16	50.62	F-box/RNI-like superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C02G038030.1	Cla97C02G038030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR45100	FAMILY NOT NAMED	coord: 52..131

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C02G038030	Melon (DHL92) v3.6.1	medwmbB101
Cla97C02G038030	Melon (DHL92) v3.5.1	mewmbB108
Cla97C02G038030	Watermelon (Charleston Gray)	wcgwmbB102
Cla97C02G038030	Watermelon (Charleston Gray)	wcgwmbB138
Cla97C02G038030	Watermelon (97103) v1	wmwmbB316
Cla97C02G038030	Watermelon (97103) v2	wmbwmbB011
Cla97C02G038030	Silver-seed gourd	carwmbB0435
Cla97C02G038030	Silver-seed gourd	carwmbB0842
Cla97C02G038030	Cucumber (Gy14) v2	cgybwmbB110
Cla97C02G038030	Cucumber (Gy14) v1	cgywmbB131
Cla97C02G038030	Cucumber (Gy14) v1	cgywmbB635
Cla97C02G038030	Cucurbita maxima (Rimu)	cmawmbB584
Cla97C02G038030	Cucurbita maxima (Rimu)	cmawmbB635
Cla97C02G038030	Cucurbita maxima (Rimu)	cmawmbB882
Cla97C02G038030	Cucurbita moschata (Rifu)	cmowmbB563
Cla97C02G038030	Cucurbita moschata (Rifu)	cmowmbB607
Cla97C02G038030	Wild cucumber (PI 183967)	cpiwmbB117
Cla97C02G038030	Wild cucumber (PI 183967)	cpiwmbB123
Cla97C02G038030	Wild cucumber (PI 183967)	cpiwmbB472
Cla97C02G038030	Cucumber (Chinese Long) v3	cucwmbB120
Cla97C02G038030	Cucumber (Chinese Long) v3	cucwmbB466
Cla97C02G038030	Cucumber (Chinese Long) v2	cuwmbB115
Cla97C02G038030	Cucumber (Chinese Long) v2	cuwmbB121
Cla97C02G038030	Cucumber (Chinese Long) v2	cuwmbB448
Cla97C02G038030	Bottle gourd (USVL1VR-Ls)	lsiwmbB044
Cla97C02G038030	Bottle gourd (USVL1VR-Ls)	lsiwmbB123