Cla97C02G037200 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C02G037200
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	3-oxoacyl-[acyl-carrier-protein] synthase III
Location	Cla97Chr02 : 23914724 .. 23915100 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTGTTGTTGGTGTTCTCTCTTTTTCTCAATCTTCTAATACTCTCTCTTCTTCTCAATTCATCGTCGTGATTTCTTCAATTCTTCGCCAGTTCTTCAGCGTGATTTCTTCTGTGTGTTTCCGTCTACGTTGGTATGCTTTTGGATTCTTCACCATCTATTTTTCTGTGTTTTCGGTATTTTCGTCAATTTTGCTTAGTTTTTCTCAATATCTTCAAAAATCTAGCATGATCTGATTTCATTTGTTATTTTGTTGTAGCCTTTATCAATTAATTTGATGGTTCGAAGCAGGAAGGTGAAGGCAGGGTATACGATTGCAACTTTAGATTGCAGGGCAAGTCTAACCTGGGGGTCTGCAATTCTTAGATGGGGTTAA

mRNA sequence

ATGCGTGTTGTTGGTGTTCTCTCTTTTTCTCAATCTTCTAATACTCTCTCTTCTTCTCAATTCATCGTCGTGATTTCTTCAATTCTTCGCCAGTTCTTCAGCGTGATTTCTTCTGTGTGTTTCCGTCTACGTTGGTATGCTTTTGGATTCTTCACCATCTATTTTTCTGTGTTTTCGCCTTTATCAATTAATTTGATGGTTCGAAGCAGGAAGGTGAAGGCAGGGTATACGATTGCAACTTTAGATTGCAGGGCAAGTCTAACCTGGGGGTCTGCAATTCTTAGATGGGGTTAA

Coding sequence (CDS)

ATGCGTGTTGTTGGTGTTCTCTCTTTTTCTCAATCTTCTAATACTCTCTCTTCTTCTCAATTCATCGTCGTGATTTCTTCAATTCTTCGCCAGTTCTTCAGCGTGATTTCTTCTGTGTGTTTCCGTCTACGTTGGTATGCTTTTGGATTCTTCACCATCTATTTTTCTGTGTTTTCGCCTTTATCAATTAATTTGATGGTTCGAAGCAGGAAGGTGAAGGCAGGGTATACGATTGCAACTTTAGATTGCAGGGCAAGTCTAACCTGGGGGTCTGCAATTCTTAGATGGGGTTAA

Protein sequence

MRVVGVLSFSQSSNTLSSSQFIVVISSILRQFFSVISSVCFRLRWYAFGFFTIYFSVFSPLSINLMVRSRKVKAGYTIATLDCRASLTWGSAILRWG

Homology

[Close]

BLAST of Cla97C02G037200 vs. NCBI nr
Match: XP_008437123.1 (PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Cucumis melo])

HSP 1 Score: 53.9 bits (128), Expect = 3.5e-04
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 60  PLSINLMVRSRKVKAGYTIATLDCRASLTWGSAILRWG 98
           PL+++  VRS KVKAG+TIAT    A LTWGSAILRWG
Sbjct: 367 PLALDEAVRSGKVKAGHTIATSGFGAGLTWGSAILRWG 404

[Close]

BLAST of Cla97C02G037200 vs. NCBI nr
Match: XP_004147590.2 (PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Cucumis sativus] >KGN50222.1 hypothetical protein Csa_5G160250 [Cucumis sativus])

HSP 1 Score: 53.9 bits (128), Expect = 3.5e-04
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 60  PLSINLMVRSRKVKAGYTIATLDCRASLTWGSAILRWG 98
           PL+++  VRS KVKAG+TIAT    A LTWGSAILRWG
Sbjct: 367 PLALDEAVRSGKVKAGHTIATSGFGAGLTWGSAILRWG 404

[Close]

BLAST of Cla97C02G037200 vs. NCBI nr
Match: NP_001292956.1 (3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas] >ABJ90470.1 beta-ketoacyl-ACP synthase III [Jatropha curcas] >KDP25634.1 hypothetical protein JCGZ_20790 [Jatropha curcas])

HSP 1 Score: 53.5 bits (127), Expect = 4.6e-04
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 60  PLSINLMVRSRKVKAGYTIATLDCRASLTWGSAILRWG 98
           PL+++  VRS KVKAG+TIAT    A LTWGSAI+RWG
Sbjct: 363 PLALDEAVRSGKVKAGHTIATAGFGAGLTWGSAIIRWG 400

[Close]

BLAST of Cla97C02G037200 vs. NCBI nr
Match: XP_016174446.1 (3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Arachis ipaensis] >XP_025675372.1 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic-like [Arachis hypogaea])

HSP 1 Score: 53.5 bits (127), Expect = 4.6e-04
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 60  PLSINLMVRSRKVKAGYTIATLDCRASLTWGSAILRWG 98
           PL+++  VRS K+KAG+T+AT    A LTWGSAILRWG
Sbjct: 347 PLALDEAVRSGKIKAGHTVATAGFGAGLTWGSAILRWG 384

[Close]

BLAST of Cla97C02G037200 vs. NCBI nr
Match: KHN29524.1 (3-oxoacyl-[acyl-carrier-protein] synthase 3 B, chloroplastic [Glycine soja])

HSP 1 Score: 53.1 bits (126), Expect = 6.0e-04
Identity = 26/38 (68.42%), Postives = 29/38 (76.32%), Query Frame = 0


Query: 60  PLSINLMVRSRKVKAGYTIATLDCRASLTWGSAILRWG 98
           PL+++  VRS KVKAG TIAT    A LTWGSAILRWG
Sbjct: 319 PLALDEAVRSGKVKAGQTIATAGFGAGLTWGSAILRWG 356

[Close]

BLAST of Cla97C02G037200 vs. TrEMBL
Match: tr|A0A1S3ATE0|A0A1S3ATE0_CUCME (3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103482638 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.3e-04
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 60  PLSINLMVRSRKVKAGYTIATLDCRASLTWGSAILRWG 98
           PL+++  VRS KVKAG+TIAT    A LTWGSAILRWG
Sbjct: 367 PLALDEAVRSGKVKAGHTIATSGFGAGLTWGSAILRWG 404

[Close]

BLAST of Cla97C02G037200 vs. TrEMBL
Match: tr|A0A0A0KP71|A0A0A0KP71_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G160250 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.3e-04
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 60  PLSINLMVRSRKVKAGYTIATLDCRASLTWGSAILRWG 98
           PL+++  VRS KVKAG+TIAT    A LTWGSAILRWG
Sbjct: 367 PLALDEAVRSGKVKAGHTIATSGFGAGLTWGSAILRWG 404

[Close]

BLAST of Cla97C02G037200 vs. TrEMBL
Match: tr|Q000L1|Q000L1_JATCU (Beta-ketoacyl-ACP synthase III OS=Jatropha curcas OX=180498 GN=JCGZ_20790 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.0e-04
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 60  PLSINLMVRSRKVKAGYTIATLDCRASLTWGSAILRWG 98
           PL+++  VRS KVKAG+TIAT    A LTWGSAI+RWG
Sbjct: 363 PLALDEAVRSGKVKAGHTIATAGFGAGLTWGSAIIRWG 400

[Close]

BLAST of Cla97C02G037200 vs. TrEMBL
Match: tr|I1L735|I1L735_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100813007 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.9e-04
Identity = 26/38 (68.42%), Postives = 29/38 (76.32%), Query Frame = 0


Query: 60  PLSINLMVRSRKVKAGYTIATLDCRASLTWGSAILRWG 98
           PL+++  VRS KVKAG TIAT    A LTWGSAILRWG
Sbjct: 360 PLALDEAVRSGKVKAGQTIATAGFGAGLTWGSAILRWG 397

[Close]

BLAST of Cla97C02G037200 vs. TrEMBL
Match: tr|A0A2I4GWA3|A0A2I4GWA3_9ROSI (3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC109011421 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.9e-04
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 60  PLSINLMVRSRKVKAGYTIATLDCRASLTWGSAILRWG 98
           PL+++  VRS KVKAG+TIAT    A LTWGSAI+RWG
Sbjct: 367 PLALDEAVRSGKVKAGHTIATAGFGAGLTWGSAIVRWG 404

[Close]

BLAST of Cla97C02G037200 vs. Swiss-Prot
Match: sp|P49245|FABH2_CUPWR (3-oxoacyl-[acyl-carrier-protein] synthase 3 B, chloroplastic OS=Cuphea wrightii OX=35942 GN=KAS3B PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.8e-05
Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 0


Query: 60  PLSINLMVRSRKVKAGYTIATLDCRASLTWGSAILRWG 98
           PL+++  VR  KVKAG+ IAT    A LTWGSAI+RWG
Sbjct: 365 PLALDEAVRGGKVKAGHLIATAGFGAGLTWGSAIVRWG 402

[Close]

BLAST of Cla97C02G037200 vs. Swiss-Prot
Match: sp|P49243|FABH_ARATH (3-oxoacyl-[acyl-carrier-protein] synthase III, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g62640 PE=2 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 3.7e-05
Identity = 23/37 (62.16%), Postives = 28/37 (75.68%), Query Frame = 0


Query: 60  PLSINLMVRSRKVKAGYTIATLDCRASLTWGSAILRW 97
           PL+++  VRS KVK G+TIAT    A LTWGSAI+RW
Sbjct: 367 PLALDEAVRSGKVKPGHTIATSGFGAGLTWGSAIMRW 403

[Close]

BLAST of Cla97C02G037200 vs. Swiss-Prot
Match: sp|P49244|FABH1_CUPWR (3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic OS=Cuphea wrightii OX=35942 GN=KAS3A PE=2 SV=2)

HSP 1 Score: 47.8 bits (112), Expect = 8.2e-05
Identity = 22/38 (57.89%), Postives = 27/38 (71.05%), Query Frame = 0


Query: 60  PLSINLMVRSRKVKAGYTIATLDCRASLTWGSAILRWG 98
           PL+++  VRS  VK G+ IAT    A LTWGSAI+RWG
Sbjct: 363 PLALDEAVRSGNVKPGHVIATAGFGAGLTWGSAIIRWG 400

[Close]

BLAST of Cla97C02G037200 vs. Swiss-Prot
Match: sp|Q07510|FABH_SPIOL (3-oxoacyl-[acyl-carrier-protein] synthase III, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.4e-04
Identity = 22/38 (57.89%), Postives = 27/38 (71.05%), Query Frame = 0


Query: 60  PLSINLMVRSRKVKAGYTIATLDCRASLTWGSAILRWG 98
           PL+++  VRS KVK G  IAT    A LTWGS+I+RWG
Sbjct: 368 PLALDEAVRSGKVKPGNIIATSGFGAGLTWGSSIIRWG 405

[Close]

BLAST of Cla97C02G037200 vs. TAIR10
Match: AT1G62640.1 (3-ketoacyl-acyl carrier protein synthase III)

HSP 1 Score: 48.9 bits (115), Expect = 2.0e-06
Identity = 23/37 (62.16%), Postives = 28/37 (75.68%), Query Frame = 0


Query: 60  PLSINLMVRSRKVKAGYTIATLDCRASLTWGSAILRW 97
           PL+++  VRS KVK G+TIAT    A LTWGSAI+RW
Sbjct: 367 PLALDEAVRSGKVKPGHTIATSGFGAGLTWGSAIMRW 403

The following BLAST results are available for this feature:

BLAST of Cla97C02G037200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008437123.1	3.5e-04	68.42	PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Cucumis...	[more]
XP_004147590.2	3.5e-04	68.42	PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Cucumis...	[more]
NP_001292956.1	4.6e-04	65.79	3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas] >...	[more]
XP_016174446.1	4.6e-04	63.16	3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Arachis ipaensis] ...	[more]
KHN29524.1	6.0e-04	68.42	3-oxoacyl-[acyl-carrier-protein] synthase 3 B, chloroplastic [Glycine soja]	[more]

BLAST of Cla97C02G037200 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3ATE0\|A0A1S3ATE0_CUCME	2.3e-04	68.42	3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic OS=Cucumis melo OX=...	[more]
tr\|A0A0A0KP71\|A0A0A0KP71_CUCSA	2.3e-04	68.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G160250 PE=3 SV=1	[more]
tr\|Q000L1\|Q000L1_JATCU	3.0e-04	65.79	Beta-ketoacyl-ACP synthase III OS=Jatropha curcas OX=180498 GN=JCGZ_20790 PE=2 S...	[more]
tr\|I1L735\|I1L735_SOYBN	3.9e-04	68.42	Uncharacterized protein OS=Glycine max OX=3847 GN=100813007 PE=3 SV=1	[more]
tr\|A0A2I4GWA3\|A0A2I4GWA3_9ROSI	3.9e-04	65.79	3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic-like OS=Juglans reg...	[more]

BLAST of Cla97C02G037200 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P49245\|FABH2_CUPWR	2.8e-05	60.53	3-oxoacyl-[acyl-carrier-protein] synthase 3 B, chloroplastic OS=Cuphea wrightii ...	[more]
sp\|P49243\|FABH_ARATH	3.7e-05	62.16	3-oxoacyl-[acyl-carrier-protein] synthase III, chloroplastic OS=Arabidopsis thal...	[more]
sp\|P49244\|FABH1_CUPWR	8.2e-05	57.89	3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic OS=Cuphea wrightii ...	[more]
sp\|Q07510\|FABH_SPIOL	2.4e-04	57.89	3-oxoacyl-[acyl-carrier-protein] synthase III, chloroplastic OS=Spinacia olerace...	[more]

BLAST of Cla97C02G037200 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G62640.1	2.0e-06	62.16	3-ketoacyl-acyl carrier protein synthase III	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
molecular_function	GO:0003824	catalytic activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C02G037200.1	Cla97C02G037200.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C02G037200	Watermelon (97103) v2	wmbwmbB009
Cla97C02G037200	Silver-seed gourd	carwmbB0145
Cla97C02G037200	Silver-seed gourd	carwmbB0362
Cla97C02G037200	Cucumber (Gy14) v2	cgybwmbB110
Cla97C02G037200	Cucumber (Gy14) v1	cgywmbB021
Cla97C02G037200	Cucumber (Gy14) v1	cgywmbB307
Cla97C02G037200	Cucurbita maxima (Rimu)	cmawmbB811
Cla97C02G037200	Wild cucumber (PI 183967)	cpiwmbB117
Cla97C02G037200	Wild cucumber (PI 183967)	cpiwmbB463
Cla97C02G037200	Cucumber (Chinese Long) v3	cucwmbB120
Cla97C02G037200	Cucumber (Chinese Long) v3	cucwmbB457
Cla97C02G037200	Cucumber (Chinese Long) v2	cuwmbB115
Cla97C02G037200	Cucumber (Chinese Long) v2	cuwmbB440
Cla97C02G037200	Bottle gourd (USVL1VR-Ls)	lsiwmbB044
Cla97C02G037200	Bottle gourd (USVL1VR-Ls)	lsiwmbB128
Cla97C02G037200	Melon (DHL92) v3.6.1	medwmbB519
Cla97C02G037200	Melon (DHL92) v3.5.1	mewmbB526
Cla97C02G037200	Watermelon (Charleston Gray)	wcgwmbB138
Cla97C02G037200	Watermelon (97103) v1	wmwmbB316