Cla97C02G037000 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C02G037000
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	protein CMSS1
Location	Cla97Chr02 : 23123439 .. 23124010 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTCAGAAATGCAGCATCCATAGCGTTCGATCCATCTGCATCTCACTCCACTCGCTATCAAATGTAAGAACTAATATATGATCTATAAAAATGGTAGGTTATTTTGCGAGTTAGATGAAATGTACTGTATGTTCAAAGGGAGTTTGTACAACTTGAATTTGTGTTTGTGTTTTTTATATGTTCATCAAAATTCACTTTTCAATTTGTTAGTTCTCTTGGGCAGATGATCAATAACCCAAGGCCTAATTAGCATTTTGTGAGTGTTTATAATTTCTTTTGGCATTCTAATTAGCCGTTTTCTTTTAGTAAAATTGTCTTTCAAGTTTGTTTGATAGAGCCTAATTGTTTGCATTTTTCTGTAATGTGTGAGAATTTGTCTGATTTTTGTTATGATTGGAGAATTTTTTAGATAGATGCATTCTAGGTCCTTCTGATAGTTCAGTTCCAGATGATAAAAGCTTGGTGAAACATATCAAGGAGGCTTTTGAGTCATCGTGGAAAGAACTCTTTGAAGGAACGACTGGACCTAGGAGTCCTGCTGTTCTTATAATCAACAGATGCACTTAG

mRNA sequence

ATGTCTTTCAGAAATGCAGCATCCATAGCGTTCGATCCATCTGCATCTCACTCCACTCGCTATCAAATATGCATTCTAGGTCCTTCTGATAGTTCAGTTCCAGATGATAAAAGCTTGGTGAAACATATCAAGGAGGCTTTTGAGTCATCGTGGAAAGAACTCTTTGAAGGAACGACTGGACCTAGGAGTCCTGCTGTTCTTATAATCAACAGATGCACTTAG

Coding sequence (CDS)

ATGTCTTTCAGAAATGCAGCATCCATAGCGTTCGATCCATCTGCATCTCACTCCACTCGCTATCAAATATGCATTCTAGGTCCTTCTGATAGTTCAGTTCCAGATGATAAAAGCTTGGTGAAACATATCAAGGAGGCTTTTGAGTCATCGTGGAAAGAACTCTTTGAAGGAACGACTGGACCTAGGAGTCCTGCTGTTCTTATAATCAACAGATGCACTTAG

Protein sequence

MSFRNAASIAFDPSASHSTRYQICILGPSDSSVPDDKSLVKHIKEAFESSWKELFEGTTGPRSPAVLIINRCT

Homology

[Close]

BLAST of Cla97C02G037000 vs. NCBI nr
Match: XP_004152079.1 (PREDICTED: protein CMSS1 [Cucumis sativus] >KGN53128.1 hypothetical protein Csa_4G017160 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-09
Identity = 37/53 (69.81%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 24  CILGPSDSSVPDDKSLVKHIKEAFESSWK------ELFEGTTGPRSPAVLIIN 71
           CILGP +SSV DDKSLVKH+KEAF SSWK      EL EG T P SPAVLII+
Sbjct: 90  CILGPPESSVQDDKSLVKHVKEAFGSSWKEILCKGELLEGRTEPGSPAVLIIS 142

[Close]

BLAST of Cla97C02G037000 vs. NCBI nr
Match: XP_023527304.1 (protein CMS1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.5 bits (171), Expect = 2.7e-09
Identity = 36/53 (67.92%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 24  CILGPSDSSVPDDKSLVKHIKEAFESSWKE------LFEGTTGPRSPAVLIIN 71
           CILGP  SS+ DDK+LVKHIKEAF SSWKE      L EG T P SPAVLII+
Sbjct: 97  CILGPPQSSIQDDKTLVKHIKEAFGSSWKEVLCKGKLLEGETAPGSPAVLIIS 149

[Close]

BLAST of Cla97C02G037000 vs. NCBI nr
Match: XP_008453922.1 (PREDICTED: protein CMSS1 [Cucumis melo])

HSP 1 Score: 69.7 bits (169), Expect = 4.6e-09
Identity = 37/53 (69.81%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 24  CILGPSDSSVPDDKSLVKHIKEAFESSWK------ELFEGTTGPRSPAVLIIN 71
           CILGP +SSV DDKSLVKHIKEA  SSWK      EL EG T P SPAVLII+
Sbjct: 90  CILGPPESSVQDDKSLVKHIKEALGSSWKEVLCKGELLEGRTEPGSPAVLIIS 142

[Close]

BLAST of Cla97C02G037000 vs. NCBI nr
Match: XP_022956346.1 (protein CMS1 [Cucurbita moschata])

HSP 1 Score: 68.9 bits (167), Expect = 7.9e-09
Identity = 35/53 (66.04%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 24  CILGPSDSSVPDDKSLVKHIKEAFESSWKE------LFEGTTGPRSPAVLIIN 71
           CILGP  SS+ D+K+LVKHIKEAF SSWKE      L EG T P SPAVLII+
Sbjct: 97  CILGPPQSSIQDEKTLVKHIKEAFGSSWKEVLCKGKLLEGETAPGSPAVLIIS 149

[Close]

BLAST of Cla97C02G037000 vs. NCBI nr
Match: XP_022979899.1 (protein CMS1 [Cucurbita maxima])

HSP 1 Score: 67.8 bits (164), Expect = 1.8e-08
Identity = 34/53 (64.15%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 24  CILGPSDSSVPDDKSLVKHIKEAFESSWKE------LFEGTTGPRSPAVLIIN 71
           C+LGP  SS+ D+K+LVKHIKEAF SSWKE      L EG T P SPAVLII+
Sbjct: 97  CMLGPPQSSIQDEKTLVKHIKEAFGSSWKEVLCKGKLLEGETAPGSPAVLIIS 149

[Close]

BLAST of Cla97C02G037000 vs. TrEMBL
Match: tr|A0A0A0KUA9|A0A0A0KUA9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G017160 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.1e-10
Identity = 37/53 (69.81%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 24  CILGPSDSSVPDDKSLVKHIKEAFESSWK------ELFEGTTGPRSPAVLIIN 71
           CILGP +SSV DDKSLVKH+KEAF SSWK      EL EG T P SPAVLII+
Sbjct: 90  CILGPPESSVQDDKSLVKHVKEAFGSSWKEILCKGELLEGRTEPGSPAVLIIS 142

[Close]

BLAST of Cla97C02G037000 vs. TrEMBL
Match: tr|A0A1S3BYM0|A0A1S3BYM0_CUCME (protein CMSS1 OS=Cucumis melo OX=3656 GN=LOC103494501 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.1e-09
Identity = 37/53 (69.81%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 24  CILGPSDSSVPDDKSLVKHIKEAFESSWK------ELFEGTTGPRSPAVLIIN 71
           CILGP +SSV DDKSLVKHIKEA  SSWK      EL EG T P SPAVLII+
Sbjct: 90  CILGPPESSVQDDKSLVKHIKEALGSSWKEVLCKGELLEGRTEPGSPAVLIIS 142

The following BLAST results are available for this feature:

BLAST of Cla97C02G037000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152079.1	1.2e-09	69.81	PREDICTED: protein CMSS1 [Cucumis sativus] >KGN53128.1 hypothetical protein Csa_...	[more]
XP_023527304.1	2.7e-09	67.92	protein CMS1 [Cucurbita pepo subsp. pepo]	[more]
XP_008453922.1	4.6e-09	69.81	PREDICTED: protein CMSS1 [Cucumis melo]	[more]
XP_022956346.1	7.9e-09	66.04	protein CMS1 [Cucurbita moschata]	[more]
XP_022979899.1	1.8e-08	64.15	protein CMS1 [Cucurbita maxima]	[more]

BLAST of Cla97C02G037000 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KUA9\|A0A0A0KUA9_CUCSA	8.1e-10	69.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G017160 PE=4 SV=1	[more]
tr\|A0A1S3BYM0\|A0A1S3BYM0_CUCME	3.1e-09	69.81	protein CMSS1 OS=Cucumis melo OX=3656 GN=LOC103494501 PE=4 SV=1	[more]

BLAST of Cla97C02G037000 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C02G037000 vs. TAIR10


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C02G037000.1	Cla97C02G037000.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C02G037000	Silver-seed gourd	carwmbB0025
Cla97C02G037000	Silver-seed gourd	carwmbB0344
Cla97C02G037000	Cucumber (Gy14) v2	cgybwmbB411
Cla97C02G037000	Cucumber (Gy14) v2	cgybwmbB423
Cla97C02G037000	Cucumber (Gy14) v1	cgywmbB177
Cla97C02G037000	Cucurbita maxima (Rimu)	cmawmbB574
Cla97C02G037000	Cucurbita maxima (Rimu)	cmawmbB640
Cla97C02G037000	Cucurbita moschata (Rifu)	cmowmbB565
Cla97C02G037000	Cucurbita moschata (Rifu)	cmowmbB611
Cla97C02G037000	Cucumber (Chinese Long) v3	cucwmbB449
Cla97C02G037000	Cucumber (Chinese Long) v3	cucwmbB464
Cla97C02G037000	Cucumber (Chinese Long) v2	cuwmbB431
Cla97C02G037000	Cucumber (Chinese Long) v2	cuwmbB446
Cla97C02G037000	Bottle gourd (USVL1VR-Ls)	lsiwmbB048
Cla97C02G037000	Watermelon (Charleston Gray)	wcgwmbB138
Cla97C02G037000	Watermelon (97103) v1	wmwmbB316
Cla97C02G037000	Watermelon (97103) v1	wmwmbB320
Cla97C02G037000	Wax gourd	wgowmbB360